Lag0017695.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017695.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Gag/pol protein
Location	chr5: 6999297 .. 7004828 (-)
Sequence length	1110
RNA-Seq Expression	Lag0017695.1
Synteny	Lag0017695.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTACCGCTAAGGAGATCATGGACTCACTGCAGGAAATGTTTGGACAACTGTCCTCACAAGTTTGGCATGATGCCCTCAAGTTCATCTATAACTCACGCATGAAGGAGGGGACATCTGTGCAAGAACCCATTCTTAATCTGATGGTTCACTTCAACGTGACGGAGATGAGCGGTGTCGTCATTGATGAGCAAAGTCAGGTAAGCTTTATCATGGAGTCTCTTCCGAAGAGTTTCCTATAGTTTCGTAGCAATGTTGTGATGAACAAGATAGAGTATAACCTGACTACTCTGTTGAATGAGCTATAGACATATCGTTCTCTGGTAACACTCATTTATGTGCATTATTTAGTCTTAAAAACTTAGGTTATTACTAGGAAAACAAGGACTTTGTGCTTAAAATCATATCCTTTTTAGTCAATTTAGCAAAGGTCTTAGAATCATGTTGAAAATCTTAGAAATATTGAATTTATGTTTAAAATGTCCAAAAAGAGATTACTTTTGCAAGAATTTATCCAAGTTAAATATTTTTGTGCAGAGGACTTTGCAGTAGAAATGTGCCTGCAATTGGAGAGAAAGAGTTAGCGGAGCAAAACAATTAAAGTTGAAGATTTGCGTCCACATCTAGTTCTGAGGATGTGGAGTTTGCATTTGAATGGCGCCCGCAAACCAATAAGGAAAGTAGCCCTAGTGAAGACAGAATTGTCAAGGTAGTGCACAGAAGATTTGCGCCCAACTTTGCAGCCACAACTGGCTTTCCGACATAAATCTGAGATTCGCAGGATCTTCACAAAATCATTCGAAAATTCCAAATCTTGTATCAAATCTCCAAGGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATTTTTACCTTCAAGGGTCTTATCACACTGATCTAGGCAGCCAACCCTACCTTCCAAGGTCTATAAAAGACGACCAAGGTGCAAGAAGCAAAGAGAACTCGAAATTTCATCCTTGGGATAGTTTTTCAGTTTTTCTTTCTTATCATCTTGTAACCACTCCAAGTTCCGTATCTTCCAGCCTCTGTTGGCTCTTCCATTCGAAAGAAGAAGATGAGAAAGGCTTGTCTCACCTTGAAAAATGTTAAAGCAAGCTAGATAGAGAGGGGAAAGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTAGTTGAGTCTTGAGTTTTACTTTTGTTTAGTTTATTTTGTAAATTATTGTATCTTTTTGTTTCTATTTACTTTTCAGTTGTAAGTTCTTATTTCATGTACTCTTTTTATTATTAATATAAATTCAAGTTATTCTTTTACTTTGTAAATTTTTACTTTATGTCTTGCATTTTAATTTCTTCAATGAGCTAAGCTTCTTCTTGGGGGTTCAAATATGTGGATACCTTGAGTAGAAGAAAACTCCACCGATGCAAAGGTAACCTTGCTTCCTTTTAACATTGTTTGTTTTTTATGAAAGTTTAAGTTTCATTGTTAGCTTAAAATGATCGCTTAAGTTAGCATAGTTTGTGTTTAGTTGGTGGCCGAAAGGTTGGAGTTAACGTATCCTAGAAATAGGACTTTGTTTTCTTGCATCCTAGAAATAGGACTGGAACCACTAGAGTTTCGAGAGTCGTATGCAATAATTATCAAAGTTCATGTAGCCCTAGAAATAGATGTCTAGTTGGCTTAGTCTTCTAAAGGCACCTACAAAAAGCTAAATAGGAGTATAACTTAACTCACAATCTAGTTGTCAGGGTATTTGCGGGCGCAAACTGGAGCAATTTGTTTGCACCATGTCTATGTGGGCACTATAGATAATATTCTCCAGTCTCTGCAATGCCTGAGTGAGTTTCCAACACAAAGGTGGACGCATTTTAATGCTTTTGGTTGATGCTTATTTGAATTCCCCACTTATCTCATAGATCTTTAATCGCTTTCATTTACTTGCTTGTTTTATTTTTTGTCTTCAATCACAAAAACCCCAATCAAATTATTTCTTTGGTTACCATCCTCGGTTGTAAATTTAGAGGAGGTTCTTGTTTTACAGAATTGAGTGTTTTCCAACTATTCACCATCTCCCTTGGGTGAGATATCCAGAGTACTCTCTACTTTATTACTTGATAGTGTATATACTTGCACTCGAGCAGGGTGTTGCACTTGTAGCACACACACGTCAGTCTCTTATGAAGAATAAGAGACAAGAGAGAGAACCAAACATTGCCACCTCTAAGGGGTTCCACAGAGAATCTTCTTTTGGAATCAAATTTGTACCTTCATCTTCTAGGACTATGAGTTCCAAGAAGAAGAATAAGAGTGGGAAGGGGAAAAATAACGCTTCTGCTGCTGCTTGTAAGGGGAAAGCCAAAGTTGTAGATAAAGGAAAATGTTTCCACTGCAATGTGCATGGACATTGGAATAGAAATTGCCCCAAGTACCTGGCTGAGAATAAGAAAACCAAATAAGGTAAATATGATTTACTTGTAATTGAAACTTGTTTAATGATTGATGATTTTGCCTGAATACTAGATTCAGGGACCACTAACCATGTTTTTTCTTCTTTTTAGGGAATTAGTTCCTAGAGGCAGTTCGAAGCTGGTGAGATGACTCTTAAGGTCAAAACGAGAGAGGTTGTCTCAACTATTGCAGTGGGAGATTTTAAATTGTTTTTTAGGGATAGATTCATATTGTTAGATAGTGTATGTAATTCCTAGAGTTAAAAGTAACTTGATATCTGTCTCTTGTATACTTGAACAATTGTACTCAGTTTCTTTTAATATAAATGAACTATTCATTTTGAAATGAGGAGTTAATACAAATCAAAATATGTATCATGTACATATTAGCAATTGATAACTTGAAAATATCAAGTTATTAAGCGTCTAATTTAAGCTTATTGTGAGCCTCATGAGAGTGAAAATACCGTTGTTTTAACTAATTTATATGCTAGATGCAGTAAAATTGATTTTTTTGTATTAATGTGCTCATATTGATTATTATCTTTAAAATTCATACAAAACTGCACTAATTCTAATTTATTGTTGCATCAGGAAAAGCTTGGCCAAATATGCGCTAGAGCATGATGCGCTTGGGGCATGACATGTTGTAGCAGCTGGTGCATGGAAAGCTTGTTGTTGTACCAAGGGATGTTGTTGTTGTAGCAATGGAAGCTTGATGTTGGAGCAGCTGACGCATGGAAAGCATGTTGTTGTAGCAAGGGATGCTTGTTGCTATAGCAAGATGCATGATGATGCTACAACAAGTTTCTATCCATGAGATCATGCTTTGGCTCAAAGCAACACATGTTTTGGCTCCAAGCAAGAAAGGTTTATAAATAGGGGGAGATGAAGAATCAAAGGCATCCAGGGATCCAAGGATCCATAAGTCTTTCGTAGATTTTTTTTTTTTTTTTTGTATGTTGTAGCATGAACTAATTTCTTTTTATCAAGGCTTAGCTTAGGCTCCCAGGAGGCATTAAGATTATTTTTTGTATGCCAGCAATGAATCAATGATATTGATGCTTTCTACTTAGATGTGATAATTCTTTCATTACTAATATCCGTCTGATCAACCGATAGAGGTAGTAGCATGATAAATCCCAGAAGGGTAATGCATGTGGAAATATCTAAGTAGAGCAAGATAATGCATTACATGTAGTCTGGTTGTGTTAGGAATAACTCAACCGCTTAGGATATTTCATGAATGTGTTTGGGTTGCTTTAGGGATAATTCAACTGCTTGCAAGCATATAGAGAACTGATTAAATGCATGAATTAAGCAATAAGAATATTCTTAGTTCATCGCATGTGTAATACCGGAAGGGAATCACATGTTTATTTCTCGCTTAGGCATCAATATTCTGTCGATTCATTGTTATGTGCTACATTAATATCTTATATGTCGCATGTGGTTGTTGCGGCGAAAGTCTTGATAGCTCATCATCCATCATATCTTTCTATCGCATTATTATTGTTTTTCTTATCGCATGTTCAACCTGTCGCATCCATATTTTATTGCCCCAGCACAACATCATTAGAATATGATTTAATTTGAGATATTTTATGTACTCGCCCTTTCCCTGTGGATTCGACCCTAGAATACTCCAGGTATTACTTGGTAGTGCATAATTTATACTTGGATTAATGCACAACAATAACGATATATTCTTTAGTTAATTCAATATAAATTAGAAGTGATTAAATTCCCTATCAAGTTTCTGGCGCCGTTGTCGGGGAAGGCAACAATAGTTTAGAACGTCTTTTATTATTTCTTATTCTATGTATTGTGCTATTACAATCATCTTACTTGAGTGGGTCTTTTTCAGGTGTGTTAGGTGTATACCCAAGAAATGGCTGCACTAAACCACAAAATCCTCCCATTAATCCAATACAATTGGCTGATGATAGAGAACGAGGCATTAGAGACTATGCAGTCCCAAGGATGTGCAACTTCAACCCTGGAATTGTACGTCCTAAGCTTGACACTAAAAGGTTTGAACTTAAGCCTGTTATGTTTCAAATGCTTACTGCAGCAGGACAGTTTGGAGGAAGTGCATCAGAAGATCCTCACTCTCACCTCAAATCATTCCTCGACATTTGCAACAAGTTCATCATTCCAGGAGTTACCCCAAAACAACTTCAAGTCATATTATTTCCTTACTCGCTACGAAATGCTACTAAGGTATGGCTAAATCAACAACCTACGAATTCCATGCTACATGGAACGACTTGGCAGAAAAAGTTTTGGAGAAATATTTTCCACCAACAACAAATTCCAAATTGTGCAAGGAGATTATAATTTTCTCACAAGAAGAGGATGAGTCACTGAGCGATGCGAGGGAACGATTCAAAAATTTATTGCAAAGATGCCCCCATCATGGATTGCCTCACTGTATTCAATTGGAGACTATTGGGTTCCTAGAGTGAGTAATAATATGGTGTAAAAGACTCTAGAATTCCTGTGCAAGTATACACAGTCTGCAGCAAGTAATATTATCAATCCGAGTCCTGAATTAGTTTCCACTCTACCTATTTTGTGTAACTTTCTAATGGTTTCAAAGATGGTAAAATGATTTCGTTTTATAAGAATTATGTTGAGGCAAAATAAATGATAGAACAACAAGTAAAAAATAGATAGACAGATTAAAGACAGGCGCTGGTTAGGATTTAGTGATTGTTCTAAAAGATGCTCTAGCAATATTATTGATCATGCATTTCTCGCAGTATTATTAGCGGATTCCTCCCGGAACTCCTGATCTTTTGGGATGTGTTCCAACCCCAATGAAGTACTACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATATACAATGATCGTAGTGTGGATAATTGCCACACACTCTCTAAATCATCCCTGA

mRNA sequence

ATGCTTACCGCTAAGGAGATCATGGACTCACTGCAGGAAATGTTTGGACAACTGTCCTCACAAGTTTGGCATGATGCCCTCAAGTTCATCTATAACTCACGCATGAAGGAGGGGACATCTGTGCAAGAACCCATTCTTAATCTGATGGTTCACTTCAACGTGACGGAGATGAGCGGTGTCGTCATTGATGAGCAAAGTCAGGGTGTTGCACTTGTAGCACACACACGTCAGTCTCTTATGAAGAATAAGAGACAAGAGAGAGAACCAAACATTGCCACCTCTAAGGGGTTCCACAGAGAATCTTCTTTTGGAATCAAATTTGTACCTTCATCTTCTAGGACTATGAGTTCCAAGAAGAAGAATAAGAGTGGGAAGGGGAAAAATAACGCTTCTGCTGCTGCTTGTAAGGGGAAAGCCAAAGTTGTAGATAAAGGAAAATGTTTCCACTGCAATGTGCATGGACATTGGAATAGAAATTGCCCCAACAATGGAAGCTTGATGTTGGAGCAGCTGACGCATGGAAAGCATGTTGTTGTAGCAAGGGATGCTTGTTGCTATAGCAAGATGCATGATGATGCTACAACAAGTGTGTTAGGTGTATACCCAAGAAATGGCTGCACTAAACCACAAAATCCTCCCATTAATCCAATACAATTGGCTGATGATAGAGAACGAGGCATTAGAGACTATGCAGTCCCAAGGATGTGCAACTTCAACCCTGGAATTGTACGTCCTAAGCTTGACACTAAAAGGTTTGAACTTAAGCCTGTTATGTTTCAAATGCTTACTGCAGCAGGACAGTTTGGAGGAAGTGCATCAGAAGATCCTCACTCTCACCTCAAATCATTCCTCGACATTTGCAACAAGTTCATCATTCCAGGAGTTACCCCAAAACAACTTCAAGTCATATTATTTCCTTACTCGCTACGAAATGCTACTAAGCGGATTCCTCCCGGAACTCCTGATCTTTTGGGATGTGTTCCAACCCCAATGAAGTACTACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATATACAATGATCGTAGTGTGGATAATTGCCACACACTCTCTAAATCATCCCTGA

Coding sequence (CDS)

ATGCTTACCGCTAAGGAGATCATGGACTCACTGCAGGAAATGTTTGGACAACTGTCCTCACAAGTTTGGCATGATGCCCTCAAGTTCATCTATAACTCACGCATGAAGGAGGGGACATCTGTGCAAGAACCCATTCTTAATCTGATGGTTCACTTCAACGTGACGGAGATGAGCGGTGTCGTCATTGATGAGCAAAGTCAGGGTGTTGCACTTGTAGCACACACACGTCAGTCTCTTATGAAGAATAAGAGACAAGAGAGAGAACCAAACATTGCCACCTCTAAGGGGTTCCACAGAGAATCTTCTTTTGGAATCAAATTTGTACCTTCATCTTCTAGGACTATGAGTTCCAAGAAGAAGAATAAGAGTGGGAAGGGGAAAAATAACGCTTCTGCTGCTGCTTGTAAGGGGAAAGCCAAAGTTGTAGATAAAGGAAAATGTTTCCACTGCAATGTGCATGGACATTGGAATAGAAATTGCCCCAACAATGGAAGCTTGATGTTGGAGCAGCTGACGCATGGAAAGCATGTTGTTGTAGCAAGGGATGCTTGTTGCTATAGCAAGATGCATGATGATGCTACAACAAGTGTGTTAGGTGTATACCCAAGAAATGGCTGCACTAAACCACAAAATCCTCCCATTAATCCAATACAATTGGCTGATGATAGAGAACGAGGCATTAGAGACTATGCAGTCCCAAGGATGTGCAACTTCAACCCTGGAATTGTACGTCCTAAGCTTGACACTAAAAGGTTTGAACTTAAGCCTGTTATGTTTCAAATGCTTACTGCAGCAGGACAGTTTGGAGGAAGTGCATCAGAAGATCCTCACTCTCACCTCAAATCATTCCTCGACATTTGCAACAAGTTCATCATTCCAGGAGTTACCCCAAAACAACTTCAAGTCATATTATTTCCTTACTCGCTACGAAATGCTACTAAGCGGATTCCTCCCGGAACTCCTGATCTTTTGGGATGTGTTCCAACCCCAATGAAGTACTACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATATACAATGATCGTAGTGTGGATAATTGCCACACACTCTCTAAATCATCCCTGA

Protein sequence

MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGVVIDEQSQGVALVAHTRQSLMKNKRQEREPNIATSKGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHCNVHGHWNRNCPNNGSLMLEQLTHGKHVVVARDACCYSKMHDDATTSVLGVYPRNGCTKPQNPPINPIQLADDRERGIRDYAVPRMCNFNPGIVRPKLDTKRFELKPVMFQMLTAAGQFGGSASEDPHSHLKSFLDICNKFIIPGVTPKQLQVILFPYSLRNATKRIPPGTPDLLGCVPTPMKYYRSSTRQLAIPSSVTGVHQYTMIVVWIIATHSLNHP

Homology

[Close]

BLAST of Lag0017695.1 vs. NCBI nr
Match: KAA0037371.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.5 bits (410), Expect = 6.7e-36
Identity = 98/169 (57.99%), Postives = 115/169 (68.05%), Query Frame = 0


Query: 1   MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGV 60
           MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+M+HFNV EM   
Sbjct: 54  MLTAREIMDSLQEMFGQTSYQIKHDALKYIYNARMNEGASVREHVLNMMIHFNVAEMKEA 113

Query: 61  VIDEQSQGVALVA------HTRQSLMKNKRQEREPNIATS-KGFHRESSFGIKFVPSSSR 120
           VIDE SQ    +        T +SLMK K Q+ E N+ATS + FHR S+ G KF+PSSS 
Sbjct: 114 VIDEASQIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSNSGNKFMPSSSG 173

Query: 121 TMSSKKKNKSGKGKNNASAAACKGKAKVVD-KGKCFHCNVHGHWNRNCP 162
               KKK K G+G N A+ AA K   K  D KG CFHCN  GHW RNCP
Sbjct: 174 NKKWKKK-KGGQG-NKANLAAAKTSKKAKDAKGICFHCNQEGHWKRNCP 220

[Close]

BLAST of Lag0017695.1 vs. NCBI nr
Match: TYK28896.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 155.2 bits (391), Expect = 1.1e-33
Identity = 98/191 (51.31%), Postives = 115/191 (60.21%), Query Frame = 0


Query: 1   MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGV 60
           MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+MVHFNV EM+G 
Sbjct: 1   MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 60

Query: 61  VIDEQSQGVAL-------------------VAHTR----------QSLMKNKRQEREPNI 120
           VIDE SQ   +                   +A+T           +SLMK K Q+ E N+
Sbjct: 61  VIDEASQVSFILKSLPESFLQFRSNAVMNKIAYTLTTLLNELQNFESLMKIKGQKGEANV 120

Query: 121 ATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHC 162
           ATS + FHR S+ G K VPSSS     KKK      K N +AA    KAK   KG CFHC
Sbjct: 121 ATSTRKFHRGSTCGTKSVPSSSGNKKWKKKKGGQGNKANPAAAKTSKKAKAA-KGICFHC 180

[Close]

BLAST of Lag0017695.1 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 2.4e-33
Identity = 96/191 (50.26%), Postives = 113/191 (59.16%), Query Frame = 0


Query: 1   MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGV 60
           MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+MVHFNV EM+G 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEQSQGVALV-----------------------------AHTRQSLMKNKRQEREPNI 120
           VIDE SQ   ++                               T +SLMK K Q+ E N+
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

Query: 121 ATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHC 162
           ATS + FHR S+ G K +PSSS     KKK      K N +AA    KAK   KG CFHC
Sbjct: 208 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAA-KGICFHC 267

[Close]

BLAST of Lag0017695.1 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 2.4e-33
Identity = 96/191 (50.26%), Postives = 113/191 (59.16%), Query Frame = 0


Query: 1   MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGV 60
           MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+MVHFNV EM+G 
Sbjct: 87  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 146

Query: 61  VIDEQSQGVALV-----------------------------AHTRQSLMKNKRQEREPNI 120
           VIDE SQ   ++                               T +SLMK K Q+ E N+
Sbjct: 147 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 206

Query: 121 ATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHC 162
           ATS + FHR S+ G K +PSSS     KKK      K N +AA    KAK   KG CFHC
Sbjct: 207 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAA-KGICFHC 266

[Close]

BLAST of Lag0017695.1 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 2.4e-33
Identity = 96/191 (50.26%), Postives = 113/191 (59.16%), Query Frame = 0


Query: 1   MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGV 60
           MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+MVHFNV EM+G 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEQSQGVALV-----------------------------AHTRQSLMKNKRQEREPNI 120
           VIDE SQ   ++                               T +SLMK K Q+ E N+
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

Query: 121 ATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHC 162
           ATS + FHR S+ G K +PSSS     KKK      K N +AA    KAK   KG CFHC
Sbjct: 208 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAA-KGICFHC 267

[Close]

BLAST of Lag0017695.1 vs. ExPASy TrEMBL
Match: A0A5A7T706 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G00760 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.3e-36
Identity = 98/169 (57.99%), Postives = 115/169 (68.05%), Query Frame = 0


Query: 1   MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGV 60
           MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+M+HFNV EM   
Sbjct: 54  MLTAREIMDSLQEMFGQTSYQIKHDALKYIYNARMNEGASVREHVLNMMIHFNVAEMKEA 113

Query: 61  VIDEQSQGVALVA------HTRQSLMKNKRQEREPNIATS-KGFHRESSFGIKFVPSSSR 120
           VIDE SQ    +        T +SLMK K Q+ E N+ATS + FHR S+ G KF+PSSS 
Sbjct: 114 VIDEASQIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSNSGNKFMPSSSG 173

Query: 121 TMSSKKKNKSGKGKNNASAAACKGKAKVVD-KGKCFHCNVHGHWNRNCP 162
               KKK K G+G N A+ AA K   K  D KG CFHCN  GHW RNCP
Sbjct: 174 NKKWKKK-KGGQG-NKANLAAAKTSKKAKDAKGICFHCNQEGHWKRNCP 220

[Close]

BLAST of Lag0017695.1 vs. ExPASy TrEMBL
Match: A0A5D3DYU3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2406G00160 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.2e-34
Identity = 98/191 (51.31%), Postives = 115/191 (60.21%), Query Frame = 0


Query: 1   MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGV 60
           MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+MVHFNV EM+G 
Sbjct: 1   MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 60

Query: 61  VIDEQSQGVAL-------------------VAHTR----------QSLMKNKRQEREPNI 120
           VIDE SQ   +                   +A+T           +SLMK K Q+ E N+
Sbjct: 61  VIDEASQVSFILKSLPESFLQFRSNAVMNKIAYTLTTLLNELQNFESLMKIKGQKGEANV 120

Query: 121 ATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHC 162
           ATS + FHR S+ G K VPSSS     KKK      K N +AA    KAK   KG CFHC
Sbjct: 121 ATSTRKFHRGSTCGTKSVPSSSGNKKWKKKKGGQGNKANPAAAKTSKKAKAA-KGICFHC 180

[Close]

BLAST of Lag0017695.1 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-33
Identity = 96/191 (50.26%), Postives = 113/191 (59.16%), Query Frame = 0


Query: 1   MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGV 60
           MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+MVHFNV EM+G 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEQSQGVALV-----------------------------AHTRQSLMKNKRQEREPNI 120
           VIDE SQ   ++                               T +SLMK K Q+ E N+
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

Query: 121 ATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHC 162
           ATS + FHR S+ G K +PSSS     KKK      K N +AA    KAK   KG CFHC
Sbjct: 208 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAA-KGICFHC 267

[Close]

BLAST of Lag0017695.1 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-33
Identity = 96/191 (50.26%), Postives = 113/191 (59.16%), Query Frame = 0


Query: 1   MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGV 60
           MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+MVHFNV EM+G 
Sbjct: 205 MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 264

Query: 61  VIDEQSQGVALV-----------------------------AHTRQSLMKNKRQEREPNI 120
           VIDE SQ   ++                               T +SLMK K Q+ E N+
Sbjct: 265 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 324

Query: 121 ATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHC 162
           ATS + FHR S+ G K +PSSS     KKK      K N +AA    KAK   KG CFHC
Sbjct: 325 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAA-KGICFHC 384

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BLAST of Lag0017695.1 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-33
Identity = 96/191 (50.26%), Postives = 113/191 (59.16%), Query Frame = 0


Query: 1   MLTAKEIMDSLQEMFGQLSSQVWHDALKFIYNSRMKEGTSVQEPILNLMVHFNVTEMSGV 60
           MLTA+EIMDSLQEMFGQ S Q+ HDALK+IYN+RM EG SV+E +LN+MVHFNV EM+G 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEQSQGVALV-----------------------------AHTRQSLMKNKRQEREPNI 120
           VIDE SQ   ++                               T +SLMK K Q+ E N+
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

Query: 121 ATS-KGFHRESSFGIKFVPSSSRTMSSKKKNKSGKGKNNASAAACKGKAKVVDKGKCFHC 162
           ATS + FHR S+ G K +PSSS     KKK      K N +AA    KAK   KG CFHC
Sbjct: 208 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKAA-KGICFHC 267

The following BLAST results are available for this feature:

BLAST of Lag0017695.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037371.1	6.7e-36	57.99	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK28896.1	1.1e-33	51.31	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0044955.1	2.4e-33	50.26	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	2.4e-33	50.26	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	2.4e-33	50.26	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0017695.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0017695.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T706	3.3e-36	57.99	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G0076...	[more]
A0A5D3DYU3	5.2e-34	51.31	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2406G001...	[more]
A0A5A7SMH8	1.2e-33	50.26	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5A7V4M1	1.2e-33	50.26	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]
A0A5A7TU93	1.2e-33	50.26	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]

BLAST of Lag0017695.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	4.10.60.10		coord: 137..166 e-value: 2.3E-6 score: 29.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..132
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 146..162 score: 9.125269
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 136..164

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0017695	Lag0017695	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0017695.1.exon5	Lag0017695.1.exon5	exon
Lag0017695.1.exon4	Lag0017695.1.exon4	exon
Lag0017695.1.exon3	Lag0017695.1.exon3	exon
Lag0017695.1.exon2	Lag0017695.1.exon2	exon
Lag0017695.1.exon1	Lag0017695.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0017695.1	cds.Lag0017695.1_5	CDS
cds.Lag0017695.1	cds.Lag0017695.1_4	CDS
cds.Lag0017695.1	cds.Lag0017695.1_3	CDS
cds.Lag0017695.1	cds.Lag0017695.1_2	CDS
cds.Lag0017695.1	cds.Lag0017695.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0017695.1	Lag0017695.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding