Lag0017506 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017506
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionEncodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: (RGF1), (RGF2), (RGF3), (RGF4), (RGF5), (RGF6), (RGF7), (RGF8) and (RGF9).
Locationchr5: 4506173 .. 4507151 (+)
RNA-Seq ExpressionLag0017506
SyntenyLag0017506
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATGCCTTCTTTGGTTCTCATTCTCCTATTCTTATCAACATTGCATGCATATGATGCTCGTCATCTTCGATTCTTCGAGATCAGTTTGAGTTCTGTTTCAAGGATCGAACAAGCGTTTTGGACAAATCAGCTAACGAGAAGTTTTGACAAAAACGATAGTAACAAGGTTTCTTCTATGGAGATTGTTGGAGTTGAAATATTACAGGTATATTAAATATATCTCATCTCCCTTAGTTCTTGTGCTTTCTAAGTATCACAATTTTCAATTCTTAACCTAATAACTATATGAGAAAGAGAAGATTGAGTAAAACTTATCTAGATATATTAGCATGCATTTTTATTGATATTTCTATATCTATCAAAAAAAGGCTCAACATGGATATACGAGAAGATACCAACTTCTTTTCTTTTTAAAATATTAGAGATATTGACAAAATATCATATAATATATCAACAATTCGATAAAGTGTCGAGGATATGCGTATAAGAACAAATAATAATGATCAAGAGCTTATTCTATATATTTAAAAATTCAAACCATTCTAACGTGAGAATTATAAATTACGATCATTTCCATGATCTTTTGTCGAACTATTCACCAACATATTATCATTTTATCATTATTTCTATTTACATTTTTATAAACTTGAAATCTCATCATTTCCATCAACATCAACATTTAATGCCCGGGTCAAGACAAGCCATTAATATAGACAAAAGCATATGAAATGATAATAAATGCATGGAAAAAAAGGATTTGGAAATAGTGAGTGTGCTGCCATTAATGGACCTTGGAATTTTAGCAGGGAATGAAGAAGCATAGAAGGTTGGTAATGGAGATTCCAATGAAAGACAAAGACAAAGACAAAGACAAAGTGATGAACTCTGAGGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTATGCACAACCTCACAGGAAACCTCCTATTCACAATGAAAAACCCTAG

mRNA sequence

ATGGCCATGCCTTCTTTGGTTCTCATTCTCCTATTCTTATCAACATTGCATGCATATGATGCTCGTCATCTTCGATTCTTCGAGATCAGTTTGAGTTCTGTTTCAAGGATCGAACAAGCGTTTTGGACAAATCAGCTAACGAGAAGTTTTGACAAAAACGATAGTAACAAGGTTTCTTCTATGGAGATTGTTGGAGTTGAAATATTACAGGGAATGAAGAAGCATAGAAGGTTGGTAATGGAGATTCCAATGAAAGACAAAGACAAAGACAAAGACAAAGTGATGAACTCTGAGGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTATGCACAACCTCACAGGAAACCTCCTATTCACAATGAAAAACCCTAG

Coding sequence (CDS)

ATGGCCATGCCTTCTTTGGTTCTCATTCTCCTATTCTTATCAACATTGCATGCATATGATGCTCGTCATCTTCGATTCTTCGAGATCAGTTTGAGTTCTGTTTCAAGGATCGAACAAGCGTTTTGGACAAATCAGCTAACGAGAAGTTTTGACAAAAACGATAGTAACAAGGTTTCTTCTATGGAGATTGTTGGAGTTGAAATATTACAGGGAATGAAGAAGCATAGAAGGTTGGTAATGGAGATTCCAATGAAAGACAAAGACAAAGACAAAGACAAAGTGATGAACTCTGAGGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTATGCACAACCTCACAGGAAACCTCCTATTCACAATGAAAAACCCTAG

Protein sequence

MAMPSLVLILLFLSTLHAYDARHLRFFEISLSSVSRIEQAFWTNQLTRSFDKNDSNKVSSMEIVGVEILQGMKKHRRLVMEIPMKDKDKDKDKVMNSEENEVGEDMVVMDYAQPHRKPPIHNEKP
Homology
BLAST of Lag0017506 vs. NCBI nr
Match: XP_023540680.1 (uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 145.2 bits (365), Expect = 3.8e-31
Identity = 86/129 (66.67%), Postives = 98/129 (75.97%), Query Frame = 0

Query: 1   MAMP-SLVLILLFLST-LHAYDARHLRFFEISLSSVSRIEQAFWTNQLTRSFDKNDSNKV 60
           M MP S  L LLFLST LHA DAR L+    S      I   F TNQL RS D++ SN V
Sbjct: 1   MPMPTSFFLALLFLSTFLHACDARLLKLCHSSRLESCLISPGFRTNQLERSLDESKSNDV 60

Query: 61  SSMEIVGVEILQGMKKHRRLVMEIPMKDKDKDK--DKVMNSEENEVGEDMVVMDYAQPHR 120
           SSME VG+EIL+GMKK RRL ME+P++D+D+DK  DKV+NSEENEVGEDMVVMDYAQPHR
Sbjct: 61  SSMENVGIEILKGMKKLRRLAMELPVRDRDRDKDIDKVVNSEENEVGEDMVVMDYAQPHR 120

Query: 121 KPPIHNEKP 126
           KPPIHN+KP
Sbjct: 121 KPPIHNQKP 129

BLAST of Lag0017506 vs. NCBI nr
Match: KAG7028383.1 (Root meristem growth factor 6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.3 bits (360), Expect = 1.4e-30
Identity = 86/129 (66.67%), Postives = 98/129 (75.97%), Query Frame = 0

Query: 1   MAMP-SLVLILLFLST-LHAYDARHLRFFEISLSSVSRIEQAFWTNQLTRSFDKNDSNKV 60
           M MP SL L LLFLST LHA DAR L+    S      I   F TNQL +S D++ SN V
Sbjct: 1   MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLEPCMISPGFRTNQLEKSLDESRSNDV 60

Query: 61  SSMEIVGVEILQGMKKHRRLVMEIPMK--DKDKDKDKVMNSEENEVGEDMVVMDYAQPHR 120
           SSME VG+EIL+GMKK RRL ME+P++  D+DKD DKV+NSEENEVGEDMVVMDYAQPHR
Sbjct: 61  SSMENVGIEILKGMKKLRRLAMELPVRDIDRDKDIDKVVNSEENEVGEDMVVMDYAQPHR 120

Query: 121 KPPIHNEKP 126
           KPPIHN+KP
Sbjct: 121 KPPIHNQKP 129

BLAST of Lag0017506 vs. NCBI nr
Match: XP_023005579.1 (uncharacterized protein LOC111498521 [Cucurbita maxima])

HSP 1 Score: 142.1 bits (357), Expect = 3.2e-30
Identity = 85/131 (64.89%), Postives = 98/131 (74.81%), Query Frame = 0

Query: 1   MAMP-SLVLILLFLST-LHAYDARHLRFFEISLSSVSRIEQAFWTNQLTRSFDKNDSNKV 60
           M MP SL L LLFLST LHA DAR L+    S      I   F  +QL RS DK+ SN+V
Sbjct: 1   MPMPTSLFLALLFLSTFLHACDARLLKLCHSSRLESCMISPGFRMDQLKRSLDKSKSNEV 60

Query: 61  SSMEIVGVEILQGMKKHRRLVMEIPMKDKDKDK----DKVMNSEENEVGEDMVVMDYAQP 120
           SS+E VG+EIL+GMKK RRL ME+P++D+D+DK    DKV+NSEENEVGEDMVVMDYAQP
Sbjct: 61  SSVENVGIEILKGMKKLRRLAMELPVRDRDRDKDKDIDKVVNSEENEVGEDMVVMDYAQP 120

Query: 121 HRKPPIHNEKP 126
           HRKPPIHN KP
Sbjct: 121 HRKPPIHNRKP 131

BLAST of Lag0017506 vs. NCBI nr
Match: XP_038905997.1 (uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 2.3e-28
Identity = 86/131 (65.65%), Postives = 100/131 (76.34%), Query Frame = 0

Query: 3   MPSLVLILL-FLSTLHAYDARHLRFFEISLSSVSRIE-----QAFWTNQLTRSFDKNDSN 62
           MP L LILL F STLHA +AR LRFFE S S VSRIE     Q  W +Q  RSF++++S+
Sbjct: 1   MPYLFLILLIFSSTLHACEARCLRFFE-SSSFVSRIEPHSISQGIWADQPERSFEESNSD 60

Query: 63  KVSSME-IVGVEILQGMKKH-RRLVMEIPMKDKDKDKDKVMNSEENEVGEDMVVMDYAQP 122
           K+S  E IVG+E+L+GMKKH  RLVME PM      K+KV+NS+ENEVGEDMVVMDYAQP
Sbjct: 61  KLSYKEIIVGIEMLKGMKKHGSRLVMEFPM------KEKVLNSKENEVGEDMVVMDYAQP 120

Query: 123 HRKPPIHNEKP 126
           HRKPPIHNEKP
Sbjct: 121 HRKPPIHNEKP 124

BLAST of Lag0017506 vs. NCBI nr
Match: XP_038905996.1 (uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida])

HSP 1 Score: 132.9 bits (333), Expect = 1.9e-27
Identity = 87/132 (65.91%), Postives = 100/132 (75.76%), Query Frame = 0

Query: 3   MPSLVLILL-FLSTLHAYDARHLRFFEISLSSVSRIE-----QAFWTNQLTRSFDKNDSN 62
           MP L LILL F STLHA +AR LRFFE S S VSRIE     Q  W +Q  RSF++++S+
Sbjct: 1   MPYLFLILLIFSSTLHACEARCLRFFE-SSSFVSRIEPHSISQGIWADQPERSFEESNSD 60

Query: 63  KVSSME-IVGVEIL-QGMKKH-RRLVMEIPMKDKDKDKDKVMNSEENEVGEDMVVMDYAQ 122
           K+S  E IVG+E+L QGMKKH  RLVME PM      K+KV+NS+ENEVGEDMVVMDYAQ
Sbjct: 61  KLSYKEIIVGIEMLKQGMKKHGSRLVMEFPM------KEKVLNSKENEVGEDMVVMDYAQ 120

Query: 123 PHRKPPIHNEKP 126
           PHRKPPIHNEKP
Sbjct: 121 PHRKPPIHNEKP 125

BLAST of Lag0017506 vs. ExPASy Swiss-Prot
Match: Q93VK8 (Protein GOLVEN 1 OS=Arabidopsis thaliana OX=3702 GN=GLV1 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 8.2e-05
Identity = 20/24 (83.33%), Postives = 22/24 (91.67%), Query Frame = 0

Query: 101 EVGEDMVVMDYAQPHRKPPIHNEK 125
           E GE++VVMDY QPHRKPPIHNEK
Sbjct: 62  ETGEEVVVMDYPQPHRKPPIHNEK 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023540680.13.8e-3166.67uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo][more]
KAG7028383.11.4e-3066.67Root meristem growth factor 6 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023005579.13.2e-3064.89uncharacterized protein LOC111498521 [Cucurbita maxima][more]
XP_038905997.12.3e-2865.65uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida][more]
XP_038905996.11.9e-2765.91uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Q93VK88.2e-0583.33Protein GOLVEN 1 OS=Arabidopsis thaliana OX=3702 GN=GLV1 PE=1 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..125
NoneNo IPR availablePANTHERPTHR34961:SF7SUBFAMILY NOT NAMEDcoord: 57..125
NoneNo IPR availablePANTHERPTHR34961TRANSMEMBRANE PROTEINcoord: 57..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017506.1Lag0017506.1mRNA