Lag0017262 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017262
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr5: 1501641 .. 1502051 (-)
RNA-Seq Expression	Lag0017262
Synteny	Lag0017262

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGATCTGTTTCTAGTAGAGCCCATCTTCAACGAAGAAGAGGACGCTGGCTCTGCGAAGTTGAGAATTTCTCTGTTAAGTAGACTAGAATCTGTTTTACGGAAATTGCTGGCTTCTGGAGGACGGTCCGAGGTCCGATTATGGCTTTCTAATACTATAGCTAGCATGACATCTATCAATCCCCAGCATCAGCGAGACTTGTTTATGACCTTCCTGAGACTGAAGCCACTGAAGTGGGCCTTCGCATCTCAATTACTTCAAATGTTGTTTGAAAAGAGACCACGAGAGGCGGGAATTCTCATTGCTAAGAGAAGCTACATAATGGAAAATTTTTTCGAAGGTAACATTTCCGTTTACTCATTGTCAAATTTAGCTATAGCAGTCGTAGCTGATAGCAATAACGCTTAA

mRNA sequence

ATGATTGATCTGTTTCTAGTAGAGCCCATCTTCAACGAAGAAGAGGACGCTGGCTCTGCGAAGTTGAGAATTTCTCTGTTAAGTAGACTAGAATCTGTTTTACGGAAATTGCTGGCTTCTGGAGGACGGTCCGAGGTCCGATTATGGCTTTCTAATACTATAGCTAGCATGACATCTATCAATCCCCAGCATCAGCGAGACTTGTTTATGACCTTCCTGAGACTGAAGCCACTGAAGTGGGCCTTCGCATCTCAATTACTTCAAATGTTGTTTGAAAAGAGACCACGAGAGGCGGGAATTCTCATTGCTAAGAGAAGCTACATAATGGAAAATTTTTTCGAAGGTAACATTTCCGTTTACTCATTGTCAAATTTAGCTATAGCAGTCGTAGCTGATAGCAATAACGCTTAA

Coding sequence (CDS)

ATGATTGATCTGTTTCTAGTAGAGCCCATCTTCAACGAAGAAGAGGACGCTGGCTCTGCGAAGTTGAGAATTTCTCTGTTAAGTAGACTAGAATCTGTTTTACGGAAATTGCTGGCTTCTGGAGGACGGTCCGAGGTCCGATTATGGCTTTCTAATACTATAGCTAGCATGACATCTATCAATCCCCAGCATCAGCGAGACTTGTTTATGACCTTCCTGAGACTGAAGCCACTGAAGTGGGCCTTCGCATCTCAATTACTTCAAATGTTGTTTGAAAAGAGACCACGAGAGGCGGGAATTCTCATTGCTAAGAGAAGCTACATAATGGAAAATTTTTTCGAAGGTAACATTTCCGTTTACTCATTGTCAAATTTAGCTATAGCAGTCGTAGCTGATAGCAATAACGCTTAA

Protein sequence

MIDLFLVEPIFNEEEDAGSAKLRISLLSRLESVLRKLLASGGRSEVRLWLSNTIASMTSINPQHQRDLFMTFLRLKPLKWAFASQLLQMLFEKRPREAGILIAKRSYIMENFFEGNISVYSLSNLAIAVVADSNNA

Homology

[Close]

BLAST of Lag0017262 vs. NCBI nr
Match: XP_023540456.1 (uncharacterized protein LOC111800821 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.4 bits (511), Expect = 4.8e-48
Identity = 103/116 (88.79%), Postives = 107/116 (92.24%), Query Frame = 0


Query: 1   MIDLFLVEPIFNEEEDAGSAKLRISLLSRLESVLRKLLASGGRSEVRLWLSNTIASMTSI 60
           MIDLFL EP+FNEEED GSAKLRISLLSRLESVL KLLASGGRSEVRLWL NTIASMTSI
Sbjct: 1   MIDLFLAEPVFNEEEDVGSAKLRISLLSRLESVLWKLLASGGRSEVRLWLYNTIASMTSI 60

Query: 61  NPQHQRDLFMTFLRLKPLKWAFASQLLQMLFEKRPREAGILIAKRSYIMENFFEGN 117
           +PQHQR+LFMTFLR KPL W FAS LLQMLFEKRPREAG+LIAKRSYIME FFEGN
Sbjct: 61  SPQHQRELFMTFLRSKPLNWDFASHLLQMLFEKRPREAGVLIAKRSYIMEKFFEGN 116

[Close]

BLAST of Lag0017262 vs. NCBI nr
Match: XP_022145467.1 (uncharacterized protein LOC111014910 isoform X1 [Momordica charantia])

HSP 1 Score: 200.7 bits (509), Expect = 8.2e-48
Identity = 103/116 (88.79%), Postives = 107/116 (92.24%), Query Frame = 0


Query: 1   MIDLFLVEPIFNEEEDAGSAKLRISLLSRLESVLRKLLASGGRSEVRLWLSNTIASMTSI 60
           MIDLFL EPIFN+E+D  SAKLRISLLSRLESVLRKLL SGGRSEVRLWLSNTIASMTSI
Sbjct: 1   MIDLFLAEPIFNDEKDVDSAKLRISLLSRLESVLRKLLVSGGRSEVRLWLSNTIASMTSI 60

Query: 61  NPQHQRDLFMTFLRLKPLKWAFASQLLQMLFEKRPREAGILIAKRSYIMENFFEGN 117
           +PQHQRDLF+TFLR KPLKWA ASQLLQM FEKRPR AGILIAKRSYIME FFEGN
Sbjct: 61  SPQHQRDLFVTFLRTKPLKWALASQLLQMFFEKRPRGAGILIAKRSYIMEKFFEGN 116

[Close]

BLAST of Lag0017262 vs. NCBI nr
Match: XP_023005966.1 (uncharacterized protein LOC111498825 [Cucurbita maxima])

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-47
Identity = 103/116 (88.79%), Postives = 107/116 (92.24%), Query Frame = 0


Query: 1   MIDLFLVEPIFNEEEDAGSAKLRISLLSRLESVLRKLLASGGRSEVRLWLSNTIASMTSI 60
           MIDLFL EPIFNEEED GSAKLRISLLSRLE+VL KLLASGGRSEVRLWLSNTIASMTSI
Sbjct: 1   MIDLFLAEPIFNEEEDVGSAKLRISLLSRLETVLWKLLASGGRSEVRLWLSNTIASMTSI 60

Query: 61  NPQHQRDLFMTFLRLKPLKWAFASQLLQMLFEKRPREAGILIAKRSYIMENFFEGN 117
           +PQHQR+LFMTFLR KPLKW FAS LLQM FEKR REAG+LIAKRSYIME FFEGN
Sbjct: 61  SPQHQRELFMTFLRSKPLKWDFASHLLQMFFEKRQREAGVLIAKRSYIMEKFFEGN 116

[Close]

BLAST of Lag0017262 vs. NCBI nr
Match: XP_022948246.1 (uncharacterized protein LOC111451855 [Cucurbita moschata])

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-47
Identity = 102/116 (87.93%), Postives = 107/116 (92.24%), Query Frame = 0


Query: 1   MIDLFLVEPIFNEEEDAGSAKLRISLLSRLESVLRKLLASGGRSEVRLWLSNTIASMTSI 60
           MIDLFL EP+FNEE+D GSAKLRISLLSRLESVL KLLASGGRSEVRLWLSNTIASMTSI
Sbjct: 1   MIDLFLAEPVFNEEDDVGSAKLRISLLSRLESVLWKLLASGGRSEVRLWLSNTIASMTSI 60

Query: 61  NPQHQRDLFMTFLRLKPLKWAFASQLLQMLFEKRPREAGILIAKRSYIMENFFEGN 117
           +PQHQR+LFMTFLR KPLKW FAS LLQM FEKR REAG+LIAKRSYIME FFEGN
Sbjct: 61  SPQHQRELFMTFLRSKPLKWDFASHLLQMFFEKRQREAGVLIAKRSYIMEKFFEGN 116

[Close]

BLAST of Lag0017262 vs. NCBI nr
Match: KAG6596711.1 (hypothetical protein SDJN03_09891, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-46
Identity = 101/119 (84.87%), Postives = 108/119 (90.76%), Query Frame = 0


Query: 1   MIDLFLVEPIFNEEEDAGSAKLRISLLSRLESVLRKLLASGGRSEVRLWLSNTIASMTSI 60
           MIDLFL EP+FNEE+D GSAKLRISLLSRLESVL KLLASGGRSEVRLWLSNTIASMTSI
Sbjct: 1   MIDLFLAEPVFNEEDDVGSAKLRISLLSRLESVLWKLLASGGRSEVRLWLSNTIASMTSI 60

Query: 61  NPQHQRDLFMTFLRLKPLKWAFASQLLQMLFEKRPREAGILIAKRSYIMENFFEGNISV 120
           +PQHQR+LFMTFLR KPLKW FAS LLQM FEKR REAG+LIAKRSYIME FFE ++ V
Sbjct: 61  SPQHQRELFMTFLRSKPLKWDFASHLLQMFFEKRQREAGVLIAKRSYIMEKFFEESVLV 119

The following BLAST results are available for this feature:

BLAST of Lag0017262 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023540456.1	4.8e-48	88.79	uncharacterized protein LOC111800821 [Cucurbita pepo subsp. pepo]	[more]
XP_022145467.1	8.2e-48	88.79	uncharacterized protein LOC111014910 isoform X1 [Momordica charantia]	[more]
XP_023005966.1	1.1e-47	88.79	uncharacterized protein LOC111498825 [Cucurbita maxima]	[more]
XP_022948246.1	1.4e-47	87.93	uncharacterized protein LOC111451855 [Cucurbita moschata]	[more]
KAG6596711.1	1.6e-46	84.87	hypothetical protein SDJN03_09891, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0017262 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37766	OS01G0897100 PROTEIN	coord: 1..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0017262.1	Lag0017262.1	mRNA