Lag0042186 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0042186
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Description60S ribosomal protein L9-like
Locationchr13: 38254614 .. 38255198 (-)
RNA-Seq ExpressionLag0042186
SyntenyLag0042186
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATGATCCTCTCATCGAAAGCTATGGATATCCTCGAGGGGGTGAAGATCAAAGTGATTGCCAAAATCATCAAGGTTGAAAGCCCTCGGAGGAAACTCTCACTTGCAACTTCAAGCATCTGAATTGGATTTCCAGTTGATCATCGAAGAGAACACTGGAAAGGAAAAGCTCAAGATTGATGCTTGGTTTGGCTCTAGGAAACTTCTGTTGCCATTTGCATGACCCTTAGCCATGTTGAGAATCTCATCACTGGTGTCACCAAGGGCTATCGTTACAAGATGCGATTTGTTTATGCTCACTTTCCGATCAATGCTAGCATAACCAACGACAACAAGTCCATGGAGATCTGTAACTTTCTTGGTGAGAAAAAGGTGTGAAAAGTAGATATGCTTGACAGAGTATCTATTGTACAATCTAAGAAGGTCAAAGATGAGTTAGTTTTGGATGGTAACGATATTGAGCTTGTATCTCGGTCTGCTGCCTTGATAAACCAGAAATGCCATTTCAAGAACAAAGATATCTGGAAGTTCCTTGATGGTATTTATGTTAACGCAAAGGGAAATGTTCTCGAAGAAGAGTGA

mRNA sequence

ATGAAGATGATCCTCTCATCGAAAGCTATGGATATCCTCGAGGGGGTGAAGATCAAAGTGATTGCCAAAATCATCAAGGAAACTTCTGTTGCCATTTGCATGACCCTTAGCCATGTTGAGAATCTCATCACTGGTGTCACCAAGGGCTATCGTTACAAGATGCGATTTGTTTATGCTCACTTTCCGATCAATGCTAGCATAACCAACGACAACAAGTCCATGGAGATCTGTAACTTTCTTGGTGAGAAAAAGAAATGCCATTTCAAGAACAAAGATATCTGGAAGTTCCTTGATGGTATTTATGTTAACGCAAAGGGAAATGTTCTCGAAGAAGAGTGA

Coding sequence (CDS)

ATGAAGATGATCCTCTCATCGAAAGCTATGGATATCCTCGAGGGGGTGAAGATCAAAGTGATTGCCAAAATCATCAAGGAAACTTCTGTTGCCATTTGCATGACCCTTAGCCATGTTGAGAATCTCATCACTGGTGTCACCAAGGGCTATCGTTACAAGATGCGATTTGTTTATGCTCACTTTCCGATCAATGCTAGCATAACCAACGACAACAAGTCCATGGAGATCTGTAACTTTCTTGGTGAGAAAAAGAAATGCCATTTCAAGAACAAAGATATCTGGAAGTTCCTTGATGGTATTTATGTTAACGCAAAGGGAAATGTTCTCGAAGAAGAGTGA

Protein sequence

MKMILSSKAMDILEGVKIKVIAKIIKETSVAICMTLSHVENLITGVTKGYRYKMRFVYAHFPINASITNDNKSMEICNFLGEKKKCHFKNKDIWKFLDGIYVNAKGNVLEEE
Homology
[Close]
BLAST of Lag0042186 vs. NCBI nr
Match: KAG5255351.1 (60S ribosomal protein [Salix suchowensis])

HSP 1 Score: 143.3 bits (360), Expect = 1.3e-30
Identity = 85/154 (55.19%), Postives = 96/154 (62.34%), Query Frame = 0 

Query: 1   MKMILSSKAMDILEGVKIKVIAKII--------------------KETSVAICMTLSHVE 60
           MK ILSS+ MDI +GVKIK+ A++I                    ++TS AI   LSHVE
Sbjct: 1   MKTILSSETMDIPDGVKIKINARVIEVEGPRGKLSRDFKHLNLDFQKTSAAIRTALSHVE 60

Query: 61  NLITGVTKGYRYKMRFVYAHFPINASITNDNKSMEICNFLGEKK---------------- 113
           NLITGVTKGYRYKMRFVYAHFPINASITN N ++EI NFLGEKK                
Sbjct: 61  NLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLDGVTILRSE 120

[Close]
BLAST of Lag0042186 vs. NCBI nr
Match: XP_022973063.1 (60S ribosomal protein L9-like [Cucurbita maxima])

HSP 1 Score: 137.1 bits (344), Expect = 9.2e-29
Identity = 92/194 (47.42%), Postives = 98/194 (50.52%), Query Frame = 0 

Query: 1   MKMILSSKAMDILEGVKIKVIAKII----------------------------------- 60
           MK ILSS+ MDI EGVKIKV AKII                                   
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQMSTEEETGKKKLKI 60

Query: 61  ------KETSVAICMTLSHVENLITGVTKGYRYKMRFVYAHFPINASITNDNKSMEICNF 113
                 ++TS AI   LSHVENLITGVTKGYRYKMRFVYAHFPINASITN NKS+EI NF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120

[Close]
BLAST of Lag0042186 vs. NCBI nr
Match: XP_023551562.1 (60S ribosomal protein L9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 137.1 bits (344), Expect = 9.2e-29
Identity = 92/194 (47.42%), Postives = 98/194 (50.52%), Query Frame = 0 

Query: 1   MKMILSSKAMDILEGVKIKVIAKII----------------------------------- 60
           MK ILSS+ MDI EGVKIKV AKII                                   
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60

Query: 61  ------KETSVAICMTLSHVENLITGVTKGYRYKMRFVYAHFPINASITNDNKSMEICNF 113
                 ++TS AI   LSHVENLITGVTKGYRYKMRFVYAHFPINASITN NKS+EI NF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120

[Close]
BLAST of Lag0042186 vs. NCBI nr
Match: XP_015878732.1 (60S ribosomal protein L9 isoform X1 [Ziziphus jujuba] >XP_015878733.1 60S ribosomal protein L9 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 136.7 bits (343), Expect = 1.2e-28
Identity = 91/194 (46.91%), Postives = 98/194 (50.52%), Query Frame = 0 

Query: 1   MKMILSSKAMDILEGVKIKVIAKII----------------------------------- 60
           MK ILSS+ MDI EGVKIKV AKII                                   
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITDEETGKRKLKI 60

Query: 61  ------KETSVAICMTLSHVENLITGVTKGYRYKMRFVYAHFPINASITNDNKSMEICNF 113
                 ++TS AI   LSHVENLITGVTKGYRYKMRFVYAHFPINASITN NKS+EI NF
Sbjct: 61  EAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKSIEIRNF 120

[Close]
BLAST of Lag0042186 vs. NCBI nr
Match: XP_022159699.1 (60S ribosomal protein L9-like [Momordica charantia])

HSP 1 Score: 136.7 bits (343), Expect = 1.2e-28
Identity = 92/194 (47.42%), Postives = 98/194 (50.52%), Query Frame = 0 

Query: 1   MKMILSSKAMDILEGVKIKVIAKII----------------------------------- 60
           MK ILSS+ MDI EGVKIKV AKII                                   
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEESTGKKKLKI 60

Query: 61  ------KETSVAICMTLSHVENLITGVTKGYRYKMRFVYAHFPINASITNDNKSMEICNF 113
                 ++TS AI   LSHVENLITGVTKGYRYKMRFVYAHFPINASITN NKS+EI NF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120

[Close]
BLAST of Lag0042186 vs. ExPASy Swiss-Prot
Match: P30707 (60S ribosomal protein L9 OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-27
Identity = 85/193 (44.04%), Postives = 95/193 (49.22%), Query Frame = 0 

Query: 1   MKMILSSKAMDILEGVKIKVIAKII----------------------------------- 60
           MK ILSS+ M+I +GV IKV AK+I                                   
Sbjct: 1   MKTILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDENGKKKLKID 60

Query: 61  -----KETSVAICMTLSHVENLITGVTKGYRYKMRFVYAHFPINASITNDNKSMEICNFL 113
                ++TS AI   LSHVENLITGVTKG+RYKMRFVYA FPINASITNDNKS+EI NFL
Sbjct: 61  AWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNFL 120

[Close]
BLAST of Lag0042186 vs. ExPASy Swiss-Prot
Match: P49210 (60S ribosomal protein L9 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL9 PE=2 SV=3)

HSP 1 Score: 119.8 bits (299), Expect = 2.0e-26
Identity = 77/189 (40.74%), Postives = 92/189 (48.68%), Query Frame = 0 

Query: 1   MKMILSSKAMDILEGVKIKVIAKII----------------------------------- 60
           MK IL+S+ M+I EGV ++V AK++                                   
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60

Query: 61  --KETSVAICMTLSHVENLITGVTKGYRYKMRFVYAHFPINASITNDNKSMEICNFLGEK 112
             + T  AI   +SHV+NLITGVTKGYRYKMRFVYAHFPINASITN N ++EI NFLGEK
Sbjct: 61  GTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEK 120

[Close]
BLAST of Lag0042186 vs. ExPASy Swiss-Prot
Match: P49209 (60S ribosomal protein L9-1 OS=Arabidopsis thaliana OX=3702 GN=RPL9B PE=1 SV=3)

HSP 1 Score: 114.8 bits (286), Expect = 6.4e-25
Identity = 78/194 (40.21%), Postives = 92/194 (47.42%), Query Frame = 0 

Query: 1   MKMILSSKAMDILEGVKIKVIAKII----------------------------------- 60
           MK ILSS+ MDI + V IKV AK+I                                   
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  ------KETSVAICMTLSHVENLITGVTKGYRYKMRFVYAHFPINASITNDNKSMEICNF 113
                 ++TS +I   LSHV+NLI+GVT+G+RYKMRFVYAHFPINASI  D KS+EI NF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

[Close]
BLAST of Lag0042186 vs. ExPASy Swiss-Prot
Match: Q9SZX9 (60S ribosomal protein L9-2 OS=Arabidopsis thaliana OX=3702 GN=RPL9D PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.2e-24
Identity = 77/194 (39.69%), Postives = 91/194 (46.91%), Query Frame = 0 

Query: 1   MKMILSSKAMDILEGVKIKVIAKII----------------------------------- 60
           MK ILSS+ MDI +GV IKV AK+I                                   
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 61  ------KETSVAICMTLSHVENLITGVTKGYRYKMRFVYAHFPINASITNDNKSMEICNF 113
                 ++TS +I   LSHV+NLI GVT+G+ Y+MRFVYAHFPINASI  +NKS+EI NF
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120

[Close]
BLAST of Lag0042186 vs. ExPASy Swiss-Prot
Match: P51401 (60S ribosomal protein L9-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL9B PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.5e-15
Identity = 48/118 (40.68%), Postives = 62/118 (52.54%), Query Frame = 0 

Query: 37  SHVENLITGVTKGYRYKMRFVYAHFPINASITNDN--KSMEICNFLGEKK---------- 96
           S V+N+ITGVTKGY+YKMR+VYAHFPIN +I   +  K +E+ NFLG+KK          
Sbjct: 73  SLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGV 132

Query: 97  -------------------------------KCHFKNKDIWKFLDGIYVNAKGNVLEE 112
                                           C  +NKDI KFLDGIYV+ KG ++E+
Sbjct: 133 TIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHKGFIVED 190

The following BLAST results are available for this feature:
BLAST of Lag0042186 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG5255351.11.3e-3055.1960S ribosomal protein [Salix suchowensis][more]
XP_022973063.19.2e-2947.4260S ribosomal protein L9-like [Cucurbita maxima][more]
XP_023551562.19.2e-2947.4260S ribosomal protein L9-like [Cucurbita pepo subsp. pepo][more]
XP_015878732.11.2e-2846.9160S ribosomal protein L9 isoform X1 [Ziziphus jujuba] >XP_015878733.1 60S riboso... [more]
XP_022159699.11.2e-2847.4260S ribosomal protein L9-like [Momordica charantia][more]
BLAST of Lag0042186 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P307071.4e-2744.0460S ribosomal protein L9 OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=1[more]
P492102.0e-2640.7460S ribosomal protein L9 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL9 PE=2 S... [more]
P492096.4e-2540.2160S ribosomal protein L9-1 OS=Arabidopsis thaliana OX=3702 GN=RPL9B PE=1 SV=3[more]
Q9SZX94.2e-2439.6960S ribosomal protein L9-2 OS=Arabidopsis thaliana OX=3702 GN=RPL9D PE=2 SV=1[more]
P514013.5e-1540.6860S ribosomal protein L9-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S28... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036789Ribosomal protein L6, alpha-beta domain superfamilyGENE3D3.90.930.12coord: 87..112
e-value: 5.6E-6
score: 28.4
IPR036789Ribosomal protein L6, alpha-beta domain superfamilyGENE3D3.90.930.12coord: 50..86
e-value: 4.6E-14
score: 54.3
IPR036789Ribosomal protein L6, alpha-beta domain superfamilySUPERFAMILY56053Ribosomal protein L6coord: 50..105
NoneNo IPR availablePANTHERPTHR11655:SF4060S RIBOSOMAL PROTEIN L9-LIKEcoord: 83..112
coord: 1..26
NoneNo IPR availablePANTHERPTHR11655:SF4060S RIBOSOMAL PROTEIN L9-LIKEcoord: 26..84
IPR000702Ribosomal protein L6PANTHERPTHR1165560S/50S RIBOSOMAL PROTEIN L6/L9coord: 26..84
coord: 1..26
IPR000702Ribosomal protein L6PANTHERPTHR1165560S/50S RIBOSOMAL PROTEIN L6/L9coord: 83..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0042186.1Lag0042186.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome