Lag0041022 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0041022
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotransposon gag protein
Location	chr13: 10932845 .. 10935471 (+)
RNA-Seq Expression	Lag0041022
Synteny	Lag0041022

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAATGAAGGAATGAACGATGAAGAGACTATAGAAGAATCCATGGTTGTAAACACAACCCTTCCCAAGTCGTCTTCGAAAGAAAAGCGACAAACTAATGGAGCGCATCACTTAACTTTAAAGGAAAGACAAAAGAAAATCTATCCTTTCCCTGATGCCGACATCCCTGATATGTTGGAACAACTATTGGAAGCGCAACTGATAAAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATTTTAAAGCTGGCTATGGAAAGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCCTAAGAAACTTCAACCCATGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAAAAATTTCCACAAAAAGAAAAAGAGAACTTTGCGACTTCCTACTGTATCGACGTAGAAGAAGTTGACAATTCTGAGATGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGCATTCCAAAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAACTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGGTCAATCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTTGATGAAGTAAACAGCGATAAAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATCTTATTATCTTGACCAATCCTACAAGTCAAGGACCTGATCAAGACCATGATGAAGATAAGAGCTTTTAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGAGCAAAAATCTTGAACTACGTTATGACTTGATCCCTATTCCATAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTATAAACAAAAAAAAAGTTCTTCGTTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACACGCTCCGTTGCAGTTCCTTCTTTTCAAGGTCGAAGGTTCTCACTCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACACACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGTAGTTCCTTCCCCCAAGTTTGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCCCAAGTTCGAAGGTTTATGCGCTTTGCTGCAGTTCCTTCCTCACAGTTCAAAGGTTCTCACGCGCTTCGCTGCATTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACTCGTTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCAAGCGCTGTGATTCGTTGCAATTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTTCTCCAAGTTCGAAGGCGTTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCATTGACGGCGTTCGCTTCGCTTCATCTTCAAAAATTGACTGTTGATAACTTCACTTCATATTCAAAAGTTGACGGTTGA

mRNA sequence

ATGAGAAATGAAGGAATGAACGATGAAGAGACTATAGAAGAATCCATGGTTGTAAACACAACCCTTCCCAAGTCGTCTTCGAAAGAAAAGCGACAAACTAATGGAGCGCATCACTTAACTTTAAAGGAAAGACAAAAGAAAATCTATCCTTTCCCTGATGCCGACATCCCTGATATGTTGGAACAACTATTGGAAGCGCAACTGATAAAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATTTTAAAGCTGGCTATGGAAAGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCCTAAGAAACTTCAACCCATGAGGAAGAGAAAAGAAGTTGACAATTCTGAGATGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGCATTCCAAAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAACTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGGTCAATCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTTGATGAAGTAAACAGCGATAAAAGCTTCAAAGTAGCATCCCGTCACGACCTGATCAAGACCATGATGAAGATAAGAGCTTTTAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACACGCTCCGTTGCAGTTCCTTCTTTTCAAGGTCGAAGGTTCTCACTCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACACACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGTAGTTCCTTCCCCCAAGTTTGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCCCAAGTTCGAAGGTTTATGCGCTTTGCTGCAGTTCCTTCCTCACAGTTCAAAGGTTCTCACGCGCTTCGCTGCATTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACTCGTTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCAAGCGCTGTGATTCGTTGCAATTCCTTCCTCCAAGTTCGAAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTTCTCCAAGTTCGAAGGCGTTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCATTGACGGCGTTCGCTTCGCTTCATCTTCAAAAATTGACTGTTGATAACTTCACTTCATATTCAAAAGTTGACGGTTGA

Coding sequence (CDS)

ATGAGAAATGAAGGAATGAACGATGAAGAGACTATAGAAGAATCCATGGTTGTAAACACAACCCTTCCCAAGTCGTCTTCGAAAGAAAAGCGACAAACTAATGGAGCGCATCACTTAACTTTAAAGGAAAGACAAAAGAAAATCTATCCTTTCCCTGATGCCGACATCCCTGATATGTTGGAACAACTATTGGAAGCGCAACTGATAAAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATTTTAAAGCTGGCTATGGAAAGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCCTAAGAAACTTCAACCCATGAGGAAGAGAAAAGAAGTTGACAATTCTGAGATGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGCATTCCAAAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAACTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGGTCAATCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTTGATGAAGTAAACAGCGATAAAAGCTTCAAAGTAGCATCCCGTCACGACCTGATCAAGACCATGATGAAGATAAGAGCTTTTAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACACGCTCCGTTGCAGTTCCTTCTTTTCAAGGTCGAAGGTTCTCACTCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACACACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGTAGTTCCTTCCCCCAAGTTTGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCCCAAGTTCGAAGGTTTATGCGCTTTGCTGCAGTTCCTTCCTCACAGTTCAAAGGTTCTCACGCGCTTCGCTGCATTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACTCGTTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCAAGCGCTGTGATTCGTTGCAATTCCTTCCTCCAAGTTCGAAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTTCTCCAAGTTCGAAGGCGTTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCATTGACGGCGTTCGCTTCGCTTCATCTTCAAAAATTGACTGTTGATAACTTCACTTCATATTCAAAAGTTGACGGTTGA

Protein sequence

MRNEGMNDEETIEESMVVNTTLPKSSSKEKRQTNGAHHLTLKERQKKIYPFPDADIPDMLEQLLEAQLIKLPKCKRPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAMERKIELDLDEVAQSNLATIKEKSKHQRKKDPKKLQPMRKRKEVDNSEMGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSVSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSDKSFKVASRHDLIKTMMKIRAFKCKSSLSQEPKLHDAPSPHELKSSFSPSSRVLTLYAIALFLLQVRRFFVVSCCVVPSPSSRVLSCTLLRCSSSKCEGSYVVRCCIVPSSLKFDGSHAALLEFLLPKFEGSHTLRCSSFFSRSKVLTRCVAVLSPQVRRFTHFAAVPSPKFEGSHALRSAIPSPSSKVLTRFAVVPSPKFEGSHALRCNSFLQVQRFSRASVKFLPPSLKVLTRFAAVPSPSSKVYALCCSSFLTVQRFSRASLHSFPQVRRFSRRFAAVPSSKFEGSHIASLRAALRCSSFLQVRRFSLVSLQFLPPNSKVSKVLKRCDSLQFLPPSSKLLPPSSKVPSRASLAPSPSSKALLSTAPSPSSKALLSTTPSPSSKAFLSAAPSPSSKALLSTAPSPSSKALLSTAPSPSSKVLLSTPLFEGSPLRFSFSKFEGSPLLLFKCLAAVDVLVPLHLQMLALTAFASLHLQKLTVDNFTSYSKVDG

Homology

[Close]

BLAST of Lag0041022 vs. NCBI nr
Match: KAA0056121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.4 bits (607), Expect = 2.0e-58
Identity = 160/324 (49.38%), Postives = 196/324 (60.49%), Query Frame = 0


Query: 12  IEESMVVNTTLPKSSSKEK-----RQTNG--AHHLTLKERQKKIYPFPDADIPDMLEQLL 71
           I+ESMVV+ T  KS SK K     R+ +G      TLKERQ+K+YPFPD+D+ DMLEQLL
Sbjct: 394 IKESMVVHATPLKSFSKRKETKIERKHDGDEKRQSTLKERQEKVYPFPDSDVADMLEQLL 453

Query: 72  EAQLIKLPKCKRPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAMERKIELDLDE 131
           E QLI+LP+CKRPE+  KVDDP YCKYHRVI HPVE+CFVLK+LILKLA E+KIELD+DE
Sbjct: 454 ENQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDIDE 513

Query: 132 VAQSNLATIKEKSKHQRKKDPKKLQPMR-------------------------------- 191
           VAQ+N A I+  S   + KD   LQ  R                                
Sbjct: 514 VAQTNHA-IEMTSNPIKGKDEDFLQLRRSITLAEFLPRSFLEDDPEEILEVTACHAASIV 573

Query: 192 -------KRKEVDNSEMGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSVSTSTRP 251
                    KEV+NS    QRTSVFDRIKP TTR S FQR+S+A  EEENQC     TR 
Sbjct: 574 EVDNNYGSSKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSVATKEEENQCPTFIYTRT 633

Query: 252 SAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSDKSFKVASRHDL 287
           S  +RLS+ST KK RPSTS FDRLK+T+ Q +R+M + + K F E N D        H  
Sbjct: 634 STSKRLSISTLKKDRPSTSSFDRLKMTNDQQQREMKSSKAKPFREENDDDKI-----HSC 693

[Close]

BLAST of Lag0041022 vs. NCBI nr
Match: KAA0065984.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28929.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 226.9 bits (577), Expect = 5.9e-55
Identity = 148/289 (51.21%), Postives = 181/289 (62.63%), Query Frame = 0


Query: 3   NEGMNDEETI-----EESMVVNTTLPKSSSKEKRQTNGAHH-------LTLKERQKKIYP 62
           N  +ND + I      ESMVV  T  KS SK K   +  +H        TL+ERQKK+YP
Sbjct: 93  NNEINDTKKIANSVLNESMVVQETPLKSFSKRKETKHERNHDDDEKRRPTLRERQKKVYP 152

Query: 63  FPDADIPDMLEQLLEAQLIKLPKCKRPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDLIL 122
           FPD+D+ DMLEQL+E QLI+L  CKRP +  KVDDP YCKYHRVI HPVE+CFVLK+LIL
Sbjct: 153 FPDSDVTDMLEQLIEKQLIQLLGCKRPGQAGKVDDPNYCKYHRVISHPVEKCFVLKELIL 212

Query: 123 KLAMERKIELDLDE---------VAQSNLATIKEKSKHQRKKD-PKKLQPMR-------- 182
           KLA E KI+LD+DE         +      T+ E       +D P+++  +         
Sbjct: 213 KLARENKIQLDIDEPIKGKDEDFLQPRRSITLAEFLPRSFFEDHPEEVIEVTACHTTSIV 272

Query: 183 -------KRKEVDNSEMGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSVSTSTRP 242
                    +EVDNS   +QRTSVFDRIKP TTR   FQR+SMA  EEENQC  ST TR 
Sbjct: 273 EVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYTRT 332

Query: 243 SAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSD 255
           SAF+RLS+STSKK RPSTS FDRLK+ + Q +R+M +L+ K F E N D
Sbjct: 333 SAFKRLSISTSKKHRPSTSAFDRLKMKNDQQQREMKSLKAKPFHEENDD 381

[Close]

BLAST of Lag0041022 vs. NCBI nr
Match: KAA0032121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 216.1 bits (549), Expect = 1.0e-51
Identity = 150/356 (42.13%), Postives = 193/356 (54.21%), Query Frame = 0


Query: 12  IEESMVVNTTLPKSSSKEKRQTNGAHH-------LTLKERQKKIYPFPDADIPDMLEQLL 71
           + ESM+V  T  KS SK K   +  +H        TL+ERQKK+YPFPD+D+ DMLEQL+
Sbjct: 368 LNESMLVQETPLKSFSKRKETKHKRNHDGDEKRRPTLRERQKKVYPFPDSDVADMLEQLI 427

Query: 72  EAQLIKLPKCKRPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAMERKIELDLDE 131
           E QLI+LP+CKRPE++ KVDDP YCKYHRVI H VE+CFVLK+LI KLA E KIELD+DE
Sbjct: 428 EKQLIQLPECKRPEQVGKVDDPNYCKYHRVISHLVEKCFVLKELIRKLARENKIELDIDE 487

Query: 132 VAQSN--------------------------------LATIKEK---SKHQRKKDPKKLQ 191
           VAQ+N                                L   ++K   S  Q K++P + +
Sbjct: 488 VAQTNHVAVNMTSSVPLSILLYDQRKSLIQFGTFEPILVRFQQKTMTSNSQNKEEPSEDE 547

Query: 192 PMR------------------------------------KRKEVDNSEMGEQRTSVFDRI 251
                                                    +E+DNS   +QRTSVFD I
Sbjct: 548 GEEWIEFLPRSFLEDHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNEIKQRTSVFDCI 607

Query: 252 KPPTTRPSAFQRMSMAATEEENQCSVSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTS 287
           KP TTR S FQR+SMA  +EENQC   T  + SAF+RLS+S SKK RPST  FDRLK+T+
Sbjct: 608 KPLTTRSSVFQRLSMATKKEENQCPTFTYAQTSAFKRLSISISKKHRPSTYTFDRLKMTN 667

[Close]

BLAST of Lag0041022 vs. NCBI nr
Match: KAA0025376.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 216.1 bits (549), Expect = 1.0e-51
Identity = 162/419 (38.66%), Postives = 202/419 (48.21%), Query Frame = 0


Query: 12  IEESMVVNTTLPKSSSK-------EKRQTNGAHHLTLKERQKKIYPFPDADIPDMLEQLL 71
           I+ESM+V+ T  KS SK        K   N     TLKERQ+K+YPFPD+D+ DMLEQLL
Sbjct: 47  IKESMIVHETPLKSFSKRKETKIERKHDGNEKRQSTLKERQEKVYPFPDSDVADMLEQLL 106

Query: 72  EAQLIKLPKCKRPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAMERKIELDLDE 131
           E QLI+LP+CKRPE+ EKVDDP YCKYHRVI HPVE+CFVLK+LILKLA E+KIELD+DE
Sbjct: 107 ENQLIQLPECKRPEQAEKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDIDE 166

Query: 132 VAQSN---------------------------------------LATIKEKSKHQRKKDP 191
           VAQ+N                                       + TI  ++K    KD 
Sbjct: 167 VAQTNHVAIEMTSNVPPLTQLDDQRKSLIQFGTFAPILVLFQQRIVTINSQNKEAHGKDD 226

Query: 192 ------------------------------------------KKL---QPMRKR------ 251
                                                     KK+   +P++ +      
Sbjct: 227 GEGWITVTRQKGRQPNSIKKESRFHQKYAKGSISYKKKGSRNKKMWNPKPIKGKDEDFLQ 286

Query: 252 --------------------------------------------KEVDNSEMGEQRTSVF 287
                                                       KEV+NS    QRTSVF
Sbjct: 287 LRRSITLAEFLPRSFLEGHPEEILEVTACHAASIVEVDNNYGSSKEVNNSNEINQRTSVF 346

[Close]

BLAST of Lag0041022 vs. NCBI nr
Match: TYK04576.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 214.2 bits (544), Expect = 4.0e-51
Identity = 159/392 (40.56%), Postives = 190/392 (48.47%), Query Frame = 0


Query: 12  IEESMVVNTTLPKSSSKEK-----RQTNG--AHHLTLKERQKKIYPFPDADIPDMLEQLL 71
           I+ESMVV+ T  KS SK K     R+ +G      TLKERQKK+YPFPD+D+ DMLEQLL
Sbjct: 36  IKESMVVHETPLKSFSKRKETKIERKHDGDEKRQSTLKERQKKVYPFPDSDVADMLEQLL 95

Query: 72  EAQLIKLPKCKRPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAMERKIELDLDE 131
           E QLI+LP+CKRPE+  KVDDP YCKYHRVI HPVE+CFVLK+LILKLA E+KIELD+DE
Sbjct: 96  ENQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDIDE 155

Query: 132 VAQSN---------------------------------------LATIKEKSKHQRKKD- 191
           VAQ+N                                       + TI  ++K    KD 
Sbjct: 156 VAQTNHVAIEMTSNVSPLTQLDDQRKSLIQFGTSAPILVLFQQRIVTINSQNKEAHGKDD 215

Query: 192 --------------PKKLQPMRK------------------------------------- 251
                         P  +Q   +                                     
Sbjct: 216 GEGWITVTRQKGRQPNSIQKQSRFHQKYAKGSISYKKKGRRNKKMWNPKPIKGKDEDFLQ 275

Query: 252 -------------------------------------------RKEVDNSEMGEQRTSVF 263
                                                       KEV+NS    QRTSVF
Sbjct: 276 LRRSITLAEFLPRSFLEDHPEEILEVTACHAASIVEVDNNYGSSKEVNNSNEINQRTSVF 335

[Close]

BLAST of Lag0041022 vs. ExPASy TrEMBL
Match: A0A5A7URH1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17350G00010 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 9.5e-59
Identity = 160/324 (49.38%), Postives = 196/324 (60.49%), Query Frame = 0


Query: 12  IEESMVVNTTLPKSSSKEK-----RQTNG--AHHLTLKERQKKIYPFPDADIPDMLEQLL 71
           I+ESMVV+ T  KS SK K     R+ +G      TLKERQ+K+YPFPD+D+ DMLEQLL
Sbjct: 394 IKESMVVHATPLKSFSKRKETKIERKHDGDEKRQSTLKERQEKVYPFPDSDVADMLEQLL 453

Query: 72  EAQLIKLPKCKRPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAMERKIELDLDE 131
           E QLI+LP+CKRPE+  KVDDP YCKYHRVI HPVE+CFVLK+LILKLA E+KIELD+DE
Sbjct: 454 ENQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDIDE 513

Query: 132 VAQSNLATIKEKSKHQRKKDPKKLQPMR-------------------------------- 191
           VAQ+N A I+  S   + KD   LQ  R                                
Sbjct: 514 VAQTNHA-IEMTSNPIKGKDEDFLQLRRSITLAEFLPRSFLEDDPEEILEVTACHAASIV 573

Query: 192 -------KRKEVDNSEMGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSVSTSTRP 251
                    KEV+NS    QRTSVFDRIKP TTR S FQR+S+A  EEENQC     TR 
Sbjct: 574 EVDNNYGSSKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSVATKEEENQCPTFIYTRT 633

Query: 252 SAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSDKSFKVASRHDL 287
           S  +RLS+ST KK RPSTS FDRLK+T+ Q +R+M + + K F E N D        H  
Sbjct: 634 STSKRLSISTLKKDRPSTSSFDRLKMTNDQQQREMKSSKAKPFREENDDDKI-----HSC 693

[Close]

BLAST of Lag0041022 vs. ExPASy TrEMBL
Match: A0A5A7VFA5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00130 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.9e-55
Identity = 148/289 (51.21%), Postives = 181/289 (62.63%), Query Frame = 0


Query: 3   NEGMNDEETI-----EESMVVNTTLPKSSSKEKRQTNGAHH-------LTLKERQKKIYP 62
           N  +ND + I      ESMVV  T  KS SK K   +  +H        TL+ERQKK+YP
Sbjct: 93  NNEINDTKKIANSVLNESMVVQETPLKSFSKRKETKHERNHDDDEKRRPTLRERQKKVYP 152

Query: 63  FPDADIPDMLEQLLEAQLIKLPKCKRPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDLIL 122
           FPD+D+ DMLEQL+E QLI+L  CKRP +  KVDDP YCKYHRVI HPVE+CFVLK+LIL
Sbjct: 153 FPDSDVTDMLEQLIEKQLIQLLGCKRPGQAGKVDDPNYCKYHRVISHPVEKCFVLKELIL 212

Query: 123 KLAMERKIELDLDE---------VAQSNLATIKEKSKHQRKKD-PKKLQPMR-------- 182
           KLA E KI+LD+DE         +      T+ E       +D P+++  +         
Sbjct: 213 KLARENKIQLDIDEPIKGKDEDFLQPRRSITLAEFLPRSFFEDHPEEVIEVTACHTTSIV 272

Query: 183 -------KRKEVDNSEMGEQRTSVFDRIKPPTTRPSAFQRMSMAATEEENQCSVSTSTRP 242
                    +EVDNS   +QRTSVFDRIKP TTR   FQR+SMA  EEENQC  ST TR 
Sbjct: 273 EVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYTRT 332

Query: 243 SAFQRLSVSTSKKTRPSTSVFDRLKVTSGQSKRKMDNLEVKLFDEVNSD 255
           SAF+RLS+STSKK RPSTS FDRLK+ + Q +R+M +L+ K F E N D
Sbjct: 333 SAFKRLSISTSKKHRPSTSAFDRLKMKNDQQQREMKSLKAKPFHEENDD 381

[Close]

BLAST of Lag0041022 vs. ExPASy TrEMBL
Match: A0A5A7SRE2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold452G00210 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 5.0e-52
Identity = 150/356 (42.13%), Postives = 193/356 (54.21%), Query Frame = 0


Query: 12  IEESMVVNTTLPKSSSKEKRQTNGAHH-------LTLKERQKKIYPFPDADIPDMLEQLL 71
           + ESM+V  T  KS SK K   +  +H        TL+ERQKK+YPFPD+D+ DMLEQL+
Sbjct: 368 LNESMLVQETPLKSFSKRKETKHKRNHDGDEKRRPTLRERQKKVYPFPDSDVADMLEQLI 427

Query: 72  EAQLIKLPKCKRPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAMERKIELDLDE 131
           E QLI+LP+CKRPE++ KVDDP YCKYHRVI H VE+CFVLK+LI KLA E KIELD+DE
Sbjct: 428 EKQLIQLPECKRPEQVGKVDDPNYCKYHRVISHLVEKCFVLKELIRKLARENKIELDIDE 487

Query: 132 VAQSN--------------------------------LATIKEK---SKHQRKKDPKKLQ 191
           VAQ+N                                L   ++K   S  Q K++P + +
Sbjct: 488 VAQTNHVAVNMTSSVPLSILLYDQRKSLIQFGTFEPILVRFQQKTMTSNSQNKEEPSEDE 547

Query: 192 PMR------------------------------------KRKEVDNSEMGEQRTSVFDRI 251
                                                    +E+DNS   +QRTSVFD I
Sbjct: 548 GEEWIEFLPRSFLEDHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNEIKQRTSVFDCI 607

Query: 252 KPPTTRPSAFQRMSMAATEEENQCSVSTSTRPSAFQRLSVSTSKKTRPSTSVFDRLKVTS 287
           KP TTR S FQR+SMA  +EENQC   T  + SAF+RLS+S SKK RPST  FDRLK+T+
Sbjct: 608 KPLTTRSSVFQRLSMATKKEENQCPTFTYAQTSAFKRLSISISKKHRPSTYTFDRLKMTN 667

[Close]

BLAST of Lag0041022 vs. ExPASy TrEMBL
Match: A0A5A7SHQ6 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00030 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 5.0e-52
Identity = 162/419 (38.66%), Postives = 202/419 (48.21%), Query Frame = 0


Query: 12  IEESMVVNTTLPKSSSK-------EKRQTNGAHHLTLKERQKKIYPFPDADIPDMLEQLL 71
           I+ESM+V+ T  KS SK        K   N     TLKERQ+K+YPFPD+D+ DMLEQLL
Sbjct: 47  IKESMIVHETPLKSFSKRKETKIERKHDGNEKRQSTLKERQEKVYPFPDSDVADMLEQLL 106

Query: 72  EAQLIKLPKCKRPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAMERKIELDLDE 131
           E QLI+LP+CKRPE+ EKVDDP YCKYHRVI HPVE+CFVLK+LILKLA E+KIELD+DE
Sbjct: 107 ENQLIQLPECKRPEQAEKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDIDE 166

Query: 132 VAQSN---------------------------------------LATIKEKSKHQRKKDP 191
           VAQ+N                                       + TI  ++K    KD 
Sbjct: 167 VAQTNHVAIEMTSNVPPLTQLDDQRKSLIQFGTFAPILVLFQQRIVTINSQNKEAHGKDD 226

Query: 192 ------------------------------------------KKL---QPMRKR------ 251
                                                     KK+   +P++ +      
Sbjct: 227 GEGWITVTRQKGRQPNSIKKESRFHQKYAKGSISYKKKGSRNKKMWNPKPIKGKDEDFLQ 286

Query: 252 --------------------------------------------KEVDNSEMGEQRTSVF 287
                                                       KEV+NS    QRTSVF
Sbjct: 287 LRRSITLAEFLPRSFLEGHPEEILEVTACHAASIVEVDNNYGSSKEVNNSNEINQRTSVF 346

[Close]

BLAST of Lag0041022 vs. ExPASy TrEMBL
Match: A0A5D3C2C8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002110 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.9e-51
Identity = 159/392 (40.56%), Postives = 190/392 (48.47%), Query Frame = 0


Query: 12  IEESMVVNTTLPKSSSKEK-----RQTNG--AHHLTLKERQKKIYPFPDADIPDMLEQLL 71
           I+ESMVV+ T  KS SK K     R+ +G      TLKERQKK+YPFPD+D+ DMLEQLL
Sbjct: 36  IKESMVVHETPLKSFSKRKETKIERKHDGDEKRQSTLKERQKKVYPFPDSDVADMLEQLL 95

Query: 72  EAQLIKLPKCKRPEEMEKVDDPKYCKYHRVIGHPVERCFVLKDLILKLAMERKIELDLDE 131
           E QLI+LP+CKRPE+  KVDDP YCKYHRVI HPVE+CFVLK+LILKLA E+KIELD+DE
Sbjct: 96  ENQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDIDE 155

Query: 132 VAQSN---------------------------------------LATIKEKSKHQRKKD- 191
           VAQ+N                                       + TI  ++K    KD 
Sbjct: 156 VAQTNHVAIEMTSNVSPLTQLDDQRKSLIQFGTSAPILVLFQQRIVTINSQNKEAHGKDD 215

Query: 192 --------------PKKLQPMRK------------------------------------- 251
                         P  +Q   +                                     
Sbjct: 216 GEGWITVTRQKGRQPNSIQKQSRFHQKYAKGSISYKKKGRRNKKMWNPKPIKGKDEDFLQ 275

Query: 252 -------------------------------------------RKEVDNSEMGEQRTSVF 263
                                                       KEV+NS    QRTSVF
Sbjct: 276 LRRSITLAEFLPRSFLEDHPEEILEVTACHAASIVEVDNNYGSSKEVNNSNEINQRTSVF 335

The following BLAST results are available for this feature:

BLAST of Lag0041022 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056121.1	2.0e-58	49.38	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065984.1	5.9e-55	51.21	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28929.1 ty3-gyp...	[more]
KAA0032121.1	1.0e-51	42.13	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0025376.1	1.0e-51	38.66	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK04576.1	4.0e-51	40.56	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0041022 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0041022 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7URH1	9.5e-59	49.38	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7VFA5	2.9e-55	51.21	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SRE2	5.0e-52	42.13	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7SHQ6	5.0e-52	38.66	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3C2C8	1.9e-51	40.56	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Lag0041022 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 596..622
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0041022.1	Lag0041022.1	mRNA