Lag0040890 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040890
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Microsomal signal peptidase 25 kDa subunit (SPC25)
Location	chr13: 9329469 .. 9329851 (-)
RNA-Seq Expression	Lag0040890
Synteny	Lag0040890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCAAAAGCGCCAAGAAGGCCAATCTCTTGGATCACCACTCCCTCAAACATCTACTCGACGAATCCGTCTCTGAGGTAATTGAATCTCTCATCCCCTCTCTTTTCAGATCCTCTTCGCGTCAATTCTACATTAGGTTTCTTTCTTACTTTCTCAAATCTTCCGTTGTTTGAGCGATTGCTTGCAGATTGTGACGAGTCGCGGGTATGTTGAAGACGTGAGGTTGAGTAATGTCAAATTGGTTATGGGCACTGTCATCATCATCATAGCTTTGGTGGCTCAGTTTTACAAAAAGAAGTTCCCTGAGAATCGCGATTTCTTGATCGGCTGCATTATATTATATCCTTTTTCTGTTCATGTGGTCATGGGGTTTGTCTGA

mRNA sequence

ATGGCGGCCAAAAGCGCCAAGAAGGCCAATCTCTTGGATCACCACTCCCTCAAACATCTACTCGACGAATCCGTCTCTGAGATTGTGACGAGTCGCGGGTATGTTGAAGACGTGAGGTTGAGTAATGTCAAATTGGTTATGGGCACTGTCATCATCATCATAGCTTTGGTGGCTCAGTTTTACAAAAAGAAGTTCCCTGAGAATCGCGATTTCTTGATCGGCTGCATTATATTATATCCTTTTTCTGTTCATGTGGTCATGGGGTTTGTCTGA

Coding sequence (CDS)

ATGGCGGCCAAAAGCGCCAAGAAGGCCAATCTCTTGGATCACCACTCCCTCAAACATCTACTCGACGAATCCGTCTCTGAGATTGTGACGAGTCGCGGGTATGTTGAAGACGTGAGGTTGAGTAATGTCAAATTGGTTATGGGCACTGTCATCATCATCATAGCTTTGGTGGCTCAGTTTTACAAAAAGAAGTTCCCTGAGAATCGCGATTTCTTGATCGGCTGCATTATATTATATCCTTTTTCTGTTCATGTGGTCATGGGGTTTGTCTGA

Protein sequence

MAAKSAKKANLLDHHSLKHLLDESVSEIVTSRGYVEDVRLSNVKLVMGTVIIIIALVAQFYKKKFPENRDFLIGCIILYPFSVHVVMGFV

Homology

[Close]

BLAST of Lag0040890 vs. NCBI nr
Match: KAG7030681.1 (putative signal peptidase complex subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158.7 bits (400), Expect = 2.4e-35
Identity = 81/90 (90.00%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MAAKSAKKANLLDHHSLKHLLDESVSEIVTSRGYVEDVRLSNVKLVMGTVIIIIALVAQF 60
          MA K+AKKANLLDHHSLKHLLDESVSEIVTSRGYVEDVRLSNVKL+MGTVIIIIALVAQF
Sbjct: 1  MATKNAKKANLLDHHSLKHLLDESVSEIVTSRGYVEDVRLSNVKLIMGTVIIIIALVAQF 60

Query: 61 YKKKFPENRDFLIGCIILYPFSVHVVMGFV 91
          YKKKFPENRDFLIGCIILYPFS  ++M  V
Sbjct: 61 YKKKFPENRDFLIGCIILYPFSFRMIMFIV 90

[Close]

BLAST of Lag0040890 vs. NCBI nr
Match: KAG6600011.1 (putative signal peptidase complex subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 156.0 bits (393), Expect = 1.5e-34
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MAAKSAKKANLLDHHSLKHLLDESVSEIVTSRGYVEDVRLSNVKLVMGTVIIIIALVAQF 60
          MA K+AKKANLLDHHSLKHLLDESVSEIVTSRGYVEDVRLSNVKL+MGTVIIIIALVAQF
Sbjct: 1  MATKNAKKANLLDHHSLKHLLDESVSEIVTSRGYVEDVRLSNVKLIMGTVIIIIALVAQF 60

Query: 61 YKKKFPENRDFLIGCIILYPFS 83
          YKKKFPENRDFLIGCIILYPFS
Sbjct: 61 YKKKFPENRDFLIGCIILYPFS 82

[Close]

BLAST of Lag0040890 vs. NCBI nr
Match: XP_022996614.1 (probable signal peptidase complex subunit 2 [Cucurbita maxima])

HSP 1 Score: 149.4 bits (376), Expect = 1.4e-32
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MAAKSAKKANLLDHHSLKHLLDESVSEIVTSRGYVEDVRLSNVKLVMGTVIIIIALVAQF 60
          MA K+AKKANLLDHHSLKHLLDESVSEIVTSRGYVEDVRLSNVKL+MGTVIIIIALVAQF
Sbjct: 1  MATKNAKKANLLDHHSLKHLLDESVSEIVTSRGYVEDVRLSNVKLIMGTVIIIIALVAQF 60

Query: 61 YKKKFPENRDFLIGCIILY 80
          YKKKFPENRDFLIGCIILY
Sbjct: 61 YKKKFPENRDFLIGCIILY 79

[Close]

BLAST of Lag0040890 vs. NCBI nr
Match: XP_008463218.1 (PREDICTED: probable signal peptidase complex subunit 2 [Cucumis melo])

HSP 1 Score: 149.4 bits (376), Expect = 1.4e-32
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MAAKSAKKANLLDHHSLKHLLDESVSEIVTSRGYVEDVRLSNVKLVMGTVIIIIALVAQF 60
          MA K+AKKANLLDHHSLKHLLDESVSEIVTSRGYVEDVRLSNVKL+MGTVIIIIALVAQF
Sbjct: 1  MATKNAKKANLLDHHSLKHLLDESVSEIVTSRGYVEDVRLSNVKLIMGTVIIIIALVAQF 60

Query: 61 YKKKFPENRDFLIGCIILY 80
          YKKKFPENRDFLIGCIILY
Sbjct: 61 YKKKFPENRDFLIGCIILY 79

[Close]

BLAST of Lag0040890 vs. NCBI nr
Match: XP_022942200.1 (probable signal peptidase complex subunit 2 [Cucurbita moschata] >XP_023529201.1 probable signal peptidase complex subunit 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.4 bits (376), Expect = 1.4e-32
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MAAKSAKKANLLDHHSLKHLLDESVSEIVTSRGYVEDVRLSNVKLVMGTVIIIIALVAQF 60
          MA K+AKKANLLDHHSLKHLLDESVSEIVTSRGYVEDVRLSNVKL+MGTVIIIIALVAQF
Sbjct: 1  MATKNAKKANLLDHHSLKHLLDESVSEIVTSRGYVEDVRLSNVKLIMGTVIIIIALVAQF 60

Query: 61 YKKKFPENRDFLIGCIILY 80
          YKKKFPENRDFLIGCIILY
Sbjct: 61 YKKKFPENRDFLIGCIILY 79

[Close]

BLAST of Lag0040890 vs. ExPASy Swiss-Prot
Match: P58684 (Probable signal peptidase complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=At2g39960 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.1e-30
Identity = 62/76 (81.58%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 4  KSAKKANLLDHHSLKHLLDESVSEIVTSRGYVEDVRLSNVKLVMGTVIIIIALVAQFYKK 63
          K+ KKANLLDHHS+KH+LDESVS+IVTSRGY EDVRLSN+KL++GT+II++ALVAQFY K
Sbjct: 11 KNVKKANLLDHHSIKHILDESVSDIVTSRGYKEDVRLSNLKLILGTIIIVVALVAQFYNK 70

Query: 64 KFPENRDFLIGCIILY 80
          KFPENRDFLIGCI LY
Sbjct: 71 KFPENRDFLIGCIALY 86

[Close]

BLAST of Lag0040890 vs. ExPASy Swiss-Prot
Match: Q55E35 (Signal peptidase complex subunit 2 OS=Dictyostelium discoideum OX=44689 GN=spcs2 PE=3 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 7.0e-06
Identity = 26/73 (35.62%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 8  KANLLDHHSLKHLLDESVSEIVTSR-GYVEDVRLSNVKLVMGTVIIIIALVAQFYKKKFP 67
          +  L D +++K  LD+S+ + VTS   Y ++ +L+  K++ G +   +A +AQFY   FP
Sbjct: 15 QVTLYDSNTIKQTLDDSIVKYVTSALSYTQNQKLNYTKVLFGLIGCTLAAIAQFYPIPFP 74

Query: 68 ENRDFLIGCIILY 80
          +N+  LI C+ LY
Sbjct: 75 KNKPVLILCVALY 87

The following BLAST results are available for this feature:

BLAST of Lag0040890 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030681.1	2.4e-35	90.00	putative signal peptidase complex subunit 2 [Cucurbita argyrosperma subsp. argyr...	[more]
KAG6600011.1	1.5e-34	96.34	putative signal peptidase complex subunit 2, partial [Cucurbita argyrosperma sub...	[more]
XP_022996614.1	1.4e-32	96.20	probable signal peptidase complex subunit 2 [Cucurbita maxima]	[more]
XP_008463218.1	1.4e-32	96.20	PREDICTED: probable signal peptidase complex subunit 2 [Cucumis melo]	[more]
XP_022942200.1	1.4e-32	96.20	probable signal peptidase complex subunit 2 [Cucurbita moschata] >XP_023529201.1...	[more]

BLAST of Lag0040890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P58684	3.1e-30	81.58	Probable signal peptidase complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
Q55E35	7.0e-06	35.62	Signal peptidase complex subunit 2 OS=Dictyostelium discoideum OX=44689 GN=spcs2...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009582	Signal peptidase complex subunit Spc2/SPCS2	PFAM	PF06703	SPC25	coord: 17..80 e-value: 4.5E-16 score: 59.1
IPR009582	Signal peptidase complex subunit Spc2/SPCS2	PANTHER	PTHR13085	MICROSOMAL SIGNAL PEPTIDASE 25 KDA SUBUNIT	coord: 4..81
None	No IPR available	PANTHER	PTHR13085:SF0	SIGNAL PEPTIDASE COMPLEX SUBUNIT 2	coord: 4..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040890.1	Lag0040890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006465	signal peptide processing
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005787	signal peptidase complex
molecular_function	GO:0008233	peptidase activity