Lag0040680 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040680
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RNA-binding (RRM/RBD/RNP motifs) family protein
Location	chr13: 7248643 .. 7250904 (+)
RNA-Seq Expression	Lag0040680
Synteny	Lag0040680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATGATGAGCAACAATGCAGGTCTGTTCGGCGACACGACGCTGACGAAGGTCTTCGTCGGAGGCTTGGCTTGGGAGACTCCCAAGGAAGCCATGAGAGATCACTTCGAGAAGTTCGGCGAGATCCTCGAGGCGGTTATCATCTCCGATAAACTCACCGGCAGATCCAAGGGCTATGGATTTGTAAGTCTGTGTTTCGTTCATTTCTGGAATTGATTCGATCGTGATGGATGGATTAGGGATTTTGATTGAGTTGAGTTTTTTGATTGTTCTGATTTTAGGTCACGTTCAAGGACGCGGAATCGGCGAAGAAGGCTTGTGAGGACTCGGCTCCGATCATCAATGGCCGCCGAGCCAACTGTAATCTGGCTTCGCTCGGCGCTCGCCGCGGCTCCCGCTCGGCTTCGGCTACTCCGCCGCAAGGTCCTCAACCAGGTAAGAGTCTGATGGAAACTGGTCAATTCGTTACTTGACAATGGCATTTTGGTAATTGCGTTGAAGAAATTGTGTGTAAAATTTTTGACGGTGGAGATCTGAAGTTGGCTTGTGATGAATTGAAGGATCCAACGGCGGTGGGCCGAGGACGGCGTCAGCAGGAGCATCGGGAAACCACGTGCAGTGGTACTACCCGGCGGGGACTCATCCGACGCCGTTTCACCATCAGCCTCATCAGGCCGTCCCTTTCTATGGGTATACCTTAAAGATCCTACGCCCTTCCGTATTCTAATATTACCCGTTTTTATACACTTTTATTATTTTTCTTTTTTGGGGTTTTTCCTTTTTAAATAAATTAACGTAAATTTCGTTTTCTTTTAGATACTCCCCAAGCCCCACCTACATTGCAACCGATATCAGTTACAACCACGTAAGCCTTCTTATTTTATGCTAAATTTCAATTTCCTCTTTTAACTTTTTAGGATCATGCTCATAACGTTGTATATAATGGATTTCTAAATTTTCAATTTTGTAGGATCATGTAAAATATTTAAAGATTCATTAGATTATTTTCAATTTTCAGAGATTTATTAGACATAATCTTGGAAAGATCTCAAATATTTAAAAGAATGCTAAACTATCTATTACCATTTACAAATTATCTTCTTACCAGCTACCACTATTAAAAATTTGACAACTTACTTTATTAAAAAAATCATCTTTTTTCTTGGCATTCCTCTCATTATCATCTTTTTCTCGTTAGGATAAAATATGTGACATTTGGAGGTGAGGATTTGAACCATGAACTCTCCAATCAGTAGTATAAAATTAACTATGATATCTAAATTTGGACTAGCTTTCATAAAAAATGTAACATTACTGAAGTTATGGGAAAAAAACTTAGCTGCATGACGGTAGGTAGGGATCTCCCTGCATATCACCATTAAAATGTTAACAACTATGAAAGATATTTTTTTAAAAAATTATTTTCTCCCCTCCTCTTGCGTCGTTGTCAAAAGGGGTATGTGAAGAGATCCTTGCATTTAGTTATGCAACCATGGTTTTGTTGGGAGTTATGCATTAAAAAGAATTAGAATTATGCATGGGTTGAAATAATGTAATTGGCTAGAATGGTAAGAAAGGAGATTGCTTGAATATTTTGGTAAACGGCGAGGTTTGTGATGAACAGAAACTGGGGTACATGAACGGGCATTACACGCAGATGTATCCGGGACAGGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCGATGGGGATGCCGGCCCACATATTCCCTCCCAGTCCCACGGCGGCGGGCCCTTTCGCGGCGGTCCCACCCACTTCCATTATGTCCAAACCGGCCTCCGTTGGTCCCAACCCAGGTCCGTTTTCTCTTCTCTTCATCCATTTAGTTTCAATTCTTCATGAAATCACATACCCTTTTCCCATTTCCTCTGCTGGGTTGCGTTCTGTTTTGACTATGGACTGTGATAGGATAGGACTTTTACTCTTCTAGCCTCTGCCCATTGTTTTCCATGTTCTGAAGAACAAATTTGGTCAACAGTCAAACGTTATTAACAAGAAGAAAAAAGAAACAGATCAGAGTCCTTCACGTGAAAGGATGATTTTAGTATAGGGTCTCCTCCCCCACCGCCAACTGGCCTCCCTGGGTCCCACGTGGCCAGCTCGATCCGCCGGTCGTGCGGTGGTCTTGCTGTCCCTTTCCCATCCTTAATATTCCCCATTATTAAGGACTCTTTTGCAAAACCAACGACTTTTCTAGATTTGTAA

mRNA sequence

ATGACGATGATGAGCAACAATGCAGGTCTGTTCGGCGACACGACGCTGACGAAGGTCTTCGTCGGAGGCTTGGCTTGGGAGACTCCCAAGGAAGCCATGAGAGATCACTTCGAGAAGTTCGGCGAGATCCTCGAGGCGGTTATCATCTCCGATAAACTCACCGGCAGATCCAAGGGCTATGGATTTGTCACGTTCAAGGACGCGGAATCGGCGAAGAAGGCTTGTGAGGACTCGGCTCCGATCATCAATGGCCGCCGAGCCAACTGTAATCTGGCTTCGCTCGGCGCTCGCCGCGGCTCCCGCTCGGCTTCGGCTACTCCGCCGCAAGGTCCTCAACCAGGATCCAACGGCGGTGGGCCGAGGACGGCGTCAGCAGGAGCATCGGGAAACCACGTGCAGTGGTACTACCCGGCGGGGACTCATCCGACGCCGTTTCACCATCAGCCTCATCAGGCCGTCCCTTTCTATGGATACTCCCCAAGCCCCACCTACATTGCAACCGATATCAGTTACAACCACAAACTGGGGTACATGAACGGGCATTACACGCAGATGTATCCGGGACAGGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCGATGGGGATGCCGGCCCACATATTCCCTCCCAGTCCCACGGCGGCGGGCCCTTTCGCGGCGGTCCCACCCACTTCCATTATGTCCAAACCGGCCTCCGTTGGTCCCAACCCAGGGTCTCCTCCCCCACCGCCAACTGGCCTCCCTGGGTCCCACGTGGCCAGCTCGATCCGCCGGTCGTGCGGTGGTCTTGCTGTCCCTTTCCCATCCTTAATATTCCCCATTATTAAGGACTCTTTTGCAAAACCAACGACTTTTCTAGATTTGTAA

Coding sequence (CDS)

ATGACGATGATGAGCAACAATGCAGGTCTGTTCGGCGACACGACGCTGACGAAGGTCTTCGTCGGAGGCTTGGCTTGGGAGACTCCCAAGGAAGCCATGAGAGATCACTTCGAGAAGTTCGGCGAGATCCTCGAGGCGGTTATCATCTCCGATAAACTCACCGGCAGATCCAAGGGCTATGGATTTGTCACGTTCAAGGACGCGGAATCGGCGAAGAAGGCTTGTGAGGACTCGGCTCCGATCATCAATGGCCGCCGAGCCAACTGTAATCTGGCTTCGCTCGGCGCTCGCCGCGGCTCCCGCTCGGCTTCGGCTACTCCGCCGCAAGGTCCTCAACCAGGATCCAACGGCGGTGGGCCGAGGACGGCGTCAGCAGGAGCATCGGGAAACCACGTGCAGTGGTACTACCCGGCGGGGACTCATCCGACGCCGTTTCACCATCAGCCTCATCAGGCCGTCCCTTTCTATGGATACTCCCCAAGCCCCACCTACATTGCAACCGATATCAGTTACAACCACAAACTGGGGTACATGAACGGGCATTACACGCAGATGTATCCGGGACAGGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCGATGGGGATGCCGGCCCACATATTCCCTCCCAGTCCCACGGCGGCGGGCCCTTTCGCGGCGGTCCCACCCACTTCCATTATGTCCAAACCGGCCTCCGTTGGTCCCAACCCAGGGTCTCCTCCCCCACCGCCAACTGGCCTCCCTGGGTCCCACGTGGCCAGCTCGATCCGCCGGTCGTGCGGTGGTCTTGCTGTCCCTTTCCCATCCTTAATATTCCCCATTATTAAGGACTCTTTTGCAAAACCAACGACTTTTCTAGATTTGTAA

Protein sequence

MTMMSNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQGPQPGSNGGGPRTASAGASGNHVQWYYPAGTHPTPFHHQPHQAVPFYGYSPSPTYIATDISYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPNPGSPPPPPTGLPGSHVASSIRRSCGGLAVPFPSLIFPIIKDSFAKPTTFLDL

Homology

[Close]

BLAST of Lag0040680 vs. NCBI nr
Match: XP_038891949.1 (probable RNA-binding protein ARP1 isoform X1 [Benincasa hispida])

HSP 1 Score: 478.4 bits (1230), Expect = 4.5e-131
Identity = 242/259 (93.44%), Postives = 245/259 (94.59%), Query Frame = 0


Query: 1   MTMMS-------NNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKL 60
           MTMMS       NNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKL
Sbjct: 1   MTMMSTTTNSNNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKL 60

Query: 61  TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPQGPQ 120
           TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPPQ PQ
Sbjct: 61  TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ 120

Query: 121 PGSNGGGPRTASAGAS-GNHVQWYYPAGTHPTPFHHQPHQAVPFYGYSPSPTYIATDISY 180
           PGSNGGGPRT SA A+ GNHVQWYYPAGTHPTPFHHQPHQ VPFYGYSPSPTYIATDISY
Sbjct: 121 PGSNGGGPRTTSATATPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISY 180

Query: 181 NHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTAAGPFAA 240
           NHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPT AGPFAA
Sbjct: 181 NHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240

Query: 241 VPPTSIMSKPASVGPNPGS 251
           VPP+SIMSKPASVGPNPG+
Sbjct: 241 VPPSSIMSKPASVGPNPGT 259

[Close]

BLAST of Lag0040680 vs. NCBI nr
Match: XP_038891950.1 (probable RNA-binding protein ARP1 isoform X2 [Benincasa hispida])

HSP 1 Score: 476.1 bits (1224), Expect = 2.2e-130
Identity = 241/257 (93.77%), Postives = 243/257 (94.55%), Query Frame = 0


Query: 1   MTMMS-------NNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKL 60
           MTMMS       NNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKL
Sbjct: 1   MTMMSTTTNSNNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKL 60

Query: 61  TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPQGPQ 120
           TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPPQ PQ
Sbjct: 61  TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ 120

Query: 121 PGSNGGGPRTASAGAS-GNHVQWYYPAGTHPTPFHHQPHQAVPFYGYSPSPTYIATDISY 180
           PGSNGGGPRT SA A+ GNHVQWYYPAGTHPTPFHHQPHQ VPFYGYSPSPTYIATDISY
Sbjct: 121 PGSNGGGPRTTSATATPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISY 180

Query: 181 NHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTAAGPFAA 240
           NHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPT AGPFAA
Sbjct: 181 NHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240

Query: 241 VPPTSIMSKPASVGPNP 249
           VPP+SIMSKPASVGPNP
Sbjct: 241 VPPSSIMSKPASVGPNP 257

[Close]

BLAST of Lag0040680 vs. NCBI nr
Match: XP_004143608.1 (probable RNA-binding protein ARP1 isoform X1 [Cucumis sativus])

HSP 1 Score: 470.7 bits (1210), Expect = 9.4e-129
Identity = 234/248 (94.35%), Postives = 236/248 (95.16%), Query Frame = 0


Query: 5   SNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVT 64
           S NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISDKLTGRSKGYGFVT
Sbjct: 14  STNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVT 73

Query: 65  FKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPQGPQPGSNGGGPRTA 124
           FKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPPQ PQPGSN GGPRT 
Sbjct: 74  FKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTT 133

Query: 125 SAG-ASGNHVQWYYPAGTHPTPFHHQPHQAVPFYGYSPSPTYIATDISYNHKLGYMNGHY 184
           SA  A GNHVQWYYPAGTHPTPFHHQPHQ VPFYGYSPSPTYIATDISYNHKLGYMNGHY
Sbjct: 134 SAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNGHY 193

Query: 185 TQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPA 244
           TQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPT AGPFAAVPPTSIMSKP 
Sbjct: 194 TQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPT 253

Query: 245 SVGPNPGS 251
           +VGPNPG+
Sbjct: 254 TVGPNPGT 261

[Close]

BLAST of Lag0040680 vs. NCBI nr
Match: XP_011654915.1 (probable RNA-binding protein ARP1 isoform X2 [Cucumis sativus] >KAE8647967.1 hypothetical protein Csa_000221 [Cucumis sativus])

HSP 1 Score: 468.4 bits (1204), Expect = 4.7e-128
Identity = 233/246 (94.72%), Postives = 234/246 (95.12%), Query Frame = 0


Query: 5   SNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVT 64
           S NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISDKLTGRSKGYGFVT
Sbjct: 14  STNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVT 73

Query: 65  FKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPQGPQPGSNGGGPRTA 124
           FKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPPQ PQPGSN GGPRT 
Sbjct: 74  FKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTT 133

Query: 125 SAG-ASGNHVQWYYPAGTHPTPFHHQPHQAVPFYGYSPSPTYIATDISYNHKLGYMNGHY 184
           SA  A GNHVQWYYPAGTHPTPFHHQPHQ VPFYGYSPSPTYIATDISYNHKLGYMNGHY
Sbjct: 134 SAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNGHY 193

Query: 185 TQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPA 244
           TQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPT AGPFAAVPPTSIMSKP 
Sbjct: 194 TQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPT 253

Query: 245 SVGPNP 249
           +VGPNP
Sbjct: 254 TVGPNP 259

[Close]

BLAST of Lag0040680 vs. NCBI nr
Match: XP_008445852.2 (PREDICTED: probable RNA-binding protein ARP1 isoform X1 [Cucumis melo])

HSP 1 Score: 465.7 bits (1197), Expect = 3.0e-127
Identity = 236/259 (91.12%), Postives = 242/259 (93.44%), Query Frame = 0


Query: 1   MTMM------SNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLT 60
           MTMM      + NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF+KFGEILEAVIISDKLT
Sbjct: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60

Query: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPQGPQP 120
           GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPPQ PQP
Sbjct: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120

Query: 121 GSNGGGPRTASAG-ASGNHVQWYYPAGTHPTPFHHQPHQAVPFYGYSPSPTYIATDISYN 180
           GSNGGGPRT +A  A GNHVQWYYPAGTHPTPFHHQPHQ VPFYGYSPSPTYIATDISYN
Sbjct: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 180

Query: 181 HKLGYMNGHYTQMYPGQ-AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTAAGPFAA 240
           HKLGY+NGHYTQMYPGQ AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPT AGPFAA
Sbjct: 181 HKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240

Query: 241 VPPTSIMSKPASVGPNPGS 251
           VPPTSIMSKP +VGPNPG+
Sbjct: 241 VPPTSIMSKPTTVGPNPGT 259

[Close]

BLAST of Lag0040680 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.1e-58
Identity = 137/261 (52.49%), Postives = 165/261 (63.22%), Query Frame = 0


Query: 1   MTMMSNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGY 60
           MT  +N  G FGDT LTKVFVGGLAW+T KEAM DHF K+G+ILEAVIISDKLT RSKGY
Sbjct: 1   MTTSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGY 60

Query: 61  GFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQGPQPGSNGGGP 120
           GFVTFKDA++A +ACEDS PIINGRRANCNLASLG R        +P QGP+ G+    P
Sbjct: 61  GFVTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGNRATPP 120

Query: 121 RTASAGASGNHVQWYYPAGTHPTPFHHQPHQAVPFYGYSPSPTYIATDISYNHKLG---- 180
                   GNH QWYYP+G        Q HQAVPFYGY PS  Y+A ++++N K+G    
Sbjct: 121 HV------GNHSQWYYPSGFTNQQHQQQNHQAVPFYGY-PS-AYVAPNMTFNQKVGYVGG 180

Query: 181 -YMNGHYTQMYP------------------GQAMVG-ANTLMPMYPLYHYHQSHAMGMPA 237
            YMNG+Y QM P                  G+ MVG A+ ++P Y +Y YHQS A+G   
Sbjct: 181 TYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAIGF-- 240

[Close]

BLAST of Lag0040680 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.7e-22
Identity = 50/85 (58.82%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 13 DTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 72
          DTT TK+FVGGL + T   ++R +FE FGEI EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7  DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 73 KACEDSAPIINGRRANCNLASLGAR 98
          +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Lag0040680 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.7e-22
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 13 DTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 72
          DTT TK+FVGGL + T   ++R +FE FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 73 KACEDSAPIINGRRANCNLASLGAR 98
          +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Lag0040680 vs. ExPASy Swiss-Prot
Match: Q9I8B3 (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.7e-22
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 13 DTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 72
          DTT TK+FVGGL + T   ++R +FE FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 73 KACEDSAPIINGRRANCNLASLGAR 98
          +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Lag0040680 vs. ExPASy Swiss-Prot
Match: Q5ZMA3 (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2)

HSP 1 Score: 106.7 bits (265), Expect = 4.7e-22
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 13 DTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 72
          DTT TK+FVGGL + T   ++R +FE FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 73 KACEDSAPIINGRRANCNLASLGAR 98
          +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Lag0040680 vs. ExPASy TrEMBL
Match: A0A0A0KNL6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175910 PE=4 SV=1)

HSP 1 Score: 470.7 bits (1210), Expect = 4.5e-129
Identity = 234/248 (94.35%), Postives = 236/248 (95.16%), Query Frame = 0


Query: 5   SNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVT 64
           S NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISDKLTGRSKGYGFVT
Sbjct: 14  STNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVT 73

Query: 65  FKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPQGPQPGSNGGGPRTA 124
           FKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPPQ PQPGSN GGPRT 
Sbjct: 74  FKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTT 133

Query: 125 SAG-ASGNHVQWYYPAGTHPTPFHHQPHQAVPFYGYSPSPTYIATDISYNHKLGYMNGHY 184
           SA  A GNHVQWYYPAGTHPTPFHHQPHQ VPFYGYSPSPTYIATDISYNHKLGYMNGHY
Sbjct: 134 SAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNGHY 193

Query: 185 TQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPA 244
           TQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPT AGPFAAVPPTSIMSKP 
Sbjct: 194 TQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPT 253

Query: 245 SVGPNPGS 251
           +VGPNPG+
Sbjct: 254 TVGPNPGT 261

[Close]

BLAST of Lag0040680 vs. ExPASy TrEMBL
Match: A0A1S3BEI0 (probable RNA-binding protein ARP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488745 PE=4 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 1.5e-127
Identity = 236/259 (91.12%), Postives = 242/259 (93.44%), Query Frame = 0


Query: 1   MTMM------SNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLT 60
           MTMM      + NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF+KFGEILEAVIISDKLT
Sbjct: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60

Query: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPQGPQP 120
           GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPPQ PQP
Sbjct: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120

Query: 121 GSNGGGPRTASAG-ASGNHVQWYYPAGTHPTPFHHQPHQAVPFYGYSPSPTYIATDISYN 180
           GSNGGGPRT +A  A GNHVQWYYPAGTHPTPFHHQPHQ VPFYGYSPSPTYIATDISYN
Sbjct: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 180

Query: 181 HKLGYMNGHYTQMYPGQ-AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTAAGPFAA 240
           HKLGY+NGHYTQMYPGQ AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPT AGPFAA
Sbjct: 181 HKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240

Query: 241 VPPTSIMSKPASVGPNPGS 251
           VPPTSIMSKP +VGPNPG+
Sbjct: 241 VPPTSIMSKPTTVGPNPGT 259

[Close]

BLAST of Lag0040680 vs. ExPASy TrEMBL
Match: A0A5A7SY01 (Putative RNA-binding protein ARP1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00350 PE=4 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 4.3e-127
Identity = 235/258 (91.09%), Postives = 240/258 (93.02%), Query Frame = 0


Query: 1   MTMM------SNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLT 60
           MTMM      + NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF+KFGEILEAVIISDKLT
Sbjct: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60

Query: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPQGPQP 120
           GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPPQ PQP
Sbjct: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120

Query: 121 GSNGGGPRTASAG-ASGNHVQWYYPAGTHPTPFHHQPHQAVPFYGYSPSPTYIATDISYN 180
           GSNGGGPRT +A  A GNHVQWYYPAGTHPTPFHHQPHQ VPFYGYSPSPTYIATDISYN
Sbjct: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 180

Query: 181 HKLGYMNGHYTQMYPGQ-AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTAAGPFAA 240
           HKLGY+NGHYTQMYPGQ AMVG NTLMPMYPLYHYHQSHAMGMPAHIFPPSPT AGPFAA
Sbjct: 181 HKLGYVNGHYTQMYPGQAAMVGVNTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240

Query: 241 VPPTSIMSKPASVGPNPG 250
           VPPTSIMSKP +VGPNPG
Sbjct: 241 VPPTSIMSKPTTVGPNPG 258

[Close]

BLAST of Lag0040680 vs. ExPASy TrEMBL
Match: A0A1S3BD62 (probable RNA-binding protein ARP1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488745 PE=4 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 7.3e-127
Identity = 235/257 (91.44%), Postives = 240/257 (93.39%), Query Frame = 0


Query: 1   MTMM------SNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLT 60
           MTMM      + NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF+KFGEILEAVIISDKLT
Sbjct: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60

Query: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPQGPQP 120
           GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPPQ PQP
Sbjct: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120

Query: 121 GSNGGGPRTASAG-ASGNHVQWYYPAGTHPTPFHHQPHQAVPFYGYSPSPTYIATDISYN 180
           GSNGGGPRT +A  A GNHVQWYYPAGTHPTPFHHQPHQ VPFYGYSPSPTYIATDISYN
Sbjct: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 180

Query: 181 HKLGYMNGHYTQMYPGQ-AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTAAGPFAA 240
           HKLGY+NGHYTQMYPGQ AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPT AGPFAA
Sbjct: 181 HKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240

Query: 241 VPPTSIMSKPASVGPNP 249
           VPPTSIMSKP +VGPNP
Sbjct: 241 VPPTSIMSKPTTVGPNP 257

[Close]

BLAST of Lag0040680 vs. ExPASy TrEMBL
Match: A0A6J1GYL2 (probable RNA-binding protein ARP1 isoform X6 OS=Cucurbita moschata OX=3662 GN=LOC111458665 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 4.1e-122
Identity = 222/240 (92.50%), Postives = 230/240 (95.83%), Query Frame = 0


Query: 10  LFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAE 69
           +FGDTTLTKVFVGGLAWETPKEAMRDHFEKFG+ILEAVII+DKLTGRSKGYGFVTFK+AE
Sbjct: 1   MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKEAE 60

Query: 70  SAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQGPQPGSNGGGPRTASAGASG 129
           SAKKACEDSAPIINGRRANCNLASLGARR SRSASATPPQGPQPGSNGG PRT SA A+G
Sbjct: 61  SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSA-AAG 120

Query: 130 NHVQWYYPAGTHPTPFHHQPHQAVPFYGYSPSPTYIATDISYNHKLGYMN-GHYTQMYPG 189
           NHVQWYYPAGTHPT FHHQPHQAVPFYGYSPSPTYIATDISYNHK+GYMN G Y Q+YPG
Sbjct: 121 NHVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTYIATDISYNHKVGYMNGGPYAQIYPG 180

Query: 190 QAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPNP 249
           QAMVGANTLMPMYP+YHYHQS AMGMPAHIFPPSPTAAGPFA VPPTSIMSKPASVGPNP
Sbjct: 181 QAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAGVPPTSIMSKPASVGPNP 239

[Close]

BLAST of Lag0040680 vs. TAIR 10
Match: AT3G54770.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 228.4 bits (581), Expect = 7.6e-60
Identity = 137/261 (52.49%), Postives = 165/261 (63.22%), Query Frame = 0


Query: 1   MTMMSNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGY 60
           MT  +N  G FGDT LTKVFVGGLAW+T KEAM DHF K+G+ILEAVIISDKLT RSKGY
Sbjct: 1   MTTSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGY 60

Query: 61  GFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQGPQPGSNGGGP 120
           GFVTFKDA++A +ACEDS PIINGRRANCNLASLG R        +P QGP+ G+    P
Sbjct: 61  GFVTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGNRATPP 120

Query: 121 RTASAGASGNHVQWYYPAGTHPTPFHHQPHQAVPFYGYSPSPTYIATDISYNHKLG---- 180
                   GNH QWYYP+G        Q HQAVPFYGY PS  Y+A ++++N K+G    
Sbjct: 121 HV------GNHSQWYYPSGFTNQQHQQQNHQAVPFYGY-PS-AYVAPNMTFNQKVGYVGG 180

Query: 181 -YMNGHYTQMYP------------------GQAMVG-ANTLMPMYPLYHYHQSHAMGMPA 237
            YMNG+Y QM P                  G+ MVG A+ ++P Y +Y YHQS A+G   
Sbjct: 181 TYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAIGF-- 240

[Close]

BLAST of Lag0040680 vs. TAIR 10
Match: AT3G54770.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 176.4 bits (446), Expect = 3.4e-44
Identity = 113/230 (49.13%), Postives = 136/230 (59.13%), Query Frame = 0


Query: 33  MRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLA 92
           M DHF K+G+ILEAVIISDKLT RSKGYGFVTFKDA++A +ACEDS PIINGRRANCNLA
Sbjct: 1   MYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRANCNLA 60

Query: 93  SLGAR-RGSRSASATPPQGPQPGSNGGGPRTASAGASGNHVQWYYPAGTHPTPFHHQPHQ 152
           SLG R R      ATPP                    GNH QWYYP+G        Q HQ
Sbjct: 61  SLGGRLRPKNGNRATPPH------------------VGNHSQWYYPSGFTNQQHQQQNHQ 120

Query: 153 AVPFYGYSPSPTYIATDISYNHKLG-----YMNGHYTQMYP------------------G 212
           AVPFYGY PS  Y+A ++++N K+G     YMNG+Y QM P                  G
Sbjct: 121 AVPFYGY-PS-AYVAPNMTFNQKVGYVGGTYMNGYYAQMQPQPQSQPQPQYYHHHMYGGG 180

Query: 213 QAMVG-ANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTAAGPFA-AVPPTS 237
           + MVG A+ ++P Y +Y YHQS A+G       P P+ + P + + PP S
Sbjct: 181 RVMVGAASPMVPFYTVYPYHQSQAIGF------PQPSFSKPLSFSTPPIS 204

[Close]

BLAST of Lag0040680 vs. TAIR 10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 153.3 bits (386), Expect = 3.1e-37
Identity = 102/243 (41.98%), Postives = 132/243 (54.32%), Query Frame = 0


Query: 4   MSNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFV 63
           M+   GL GDTT TKVFVGGLAWET KE M+ HFE+FGEILEAV+I+DK +GRSKGYGFV
Sbjct: 1   MAGGIGL-GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFV 60

Query: 64  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQGPQPGSNGGGPRTA 123
           TF++AE+A+ AC D+ P+I+GRRANCNLASLG +R            P   ++GGG R  
Sbjct: 61  TFREAEAARSACVDATPVIDGRRANCNLASLGLQRSK----------PSTPNHGGGGRIN 120

Query: 124 SAGASGNHVQWYY--PAGTHPTPFHHQPHQAVPFYGYSP-SPTYIATDISYNHKLGYMNG 183
           +     + +Q  +  P    P  F H PH  +  +GYSP SP Y +   +     G  +G
Sbjct: 121 NMRVMMSTMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSG 180

Query: 184 HYTQMY------PGQAMVGANTLMPMY---------------PLYHYHQSHAMGMPAHIF 223
               +Y       G     A +  P Y               P YH+  S+    P H  
Sbjct: 181 GQYGVYGNRNSGGGGLTAAAASATPFYPCGGGHGGVQFSQPQPFYHHLSSY---NPHHYS 229

[Close]

BLAST of Lag0040680 vs. TAIR 10
Match: AT1G22910.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 149.8 bits (377), Expect = 3.4e-36
Identity = 105/252 (41.67%), Postives = 135/252 (53.57%), Query Frame = 0


Query: 4   MSNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFV 63
           M+   GL GDTT TKVFVGGLAWET KE M+ HFE+FGEILEAV+I+DK +GRSKGYGFV
Sbjct: 1   MAGGIGL-GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFV 60

Query: 64  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQGPQPGSNGGGPRTA 123
           TF++AE+A+ AC D+ P+I+GRRANCNLASLG +R            P   ++GGG R  
Sbjct: 61  TFREAEAARSACVDATPVIDGRRANCNLASLGLQRSK----------PSTPNHGGGGRIN 120

Query: 124 SAGASGNHVQWYY--PAGTHPTPFHHQPHQAVPFYGYSP-SPTYIATDISYNHKLGYMNG 183
           +     + +Q  +  P    P  F H PH  +  +GYSP SP Y +   +     G  +G
Sbjct: 121 NMRVMMSTMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSG 180

Query: 184 HYTQMY------PGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTAAGPFAAVPP 243
               +Y       G     A +  P YP    H       P   F    ++  P    PP
Sbjct: 181 GQYGVYGNRNSGGGGLTAAAASATPFYPCGGGHGGVQFSQP-QPFYHHLSSYNPHHYSPP 240

Query: 244 TSIMSKPASVGP 247
           T  M +   V P
Sbjct: 241 TFSMQQVCFVVP 240

[Close]

BLAST of Lag0040680 vs. TAIR 10
Match: AT1G22910.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 147.1 bits (370), Expect = 2.2e-35
Identity = 107/261 (41.00%), Postives = 138/261 (52.87%), Query Frame = 0


Query: 4   MSNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFV 63
           M+   GL GDTT TKVFVGGLAWET KE M+ HFE+FGEILEAV+I+DK +GRSKGYGFV
Sbjct: 1   MAGGIGL-GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFV 60

Query: 64  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQGPQPGSNGGGPRTA 123
           TF++AE+A+ AC D+ P+I+GRRANCNLASLG +R            P   ++GGG R  
Sbjct: 61  TFREAEAARSACVDATPVIDGRRANCNLASLGLQRSK----------PSTPNHGGGGRIN 120

Query: 124 SAGASGNHVQWYY--PAGTHPTPFHHQPHQAVPFYGYSP-SPTYIATDISYNHKLGYMNG 183
           +     + +Q  +  P    P  F H PH  +  +GYSP SP Y +   +     G  +G
Sbjct: 121 NMRVMMSTMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSG 180

Query: 184 HYTQMY------PGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTAAGPFAAVPP 243
               +Y       G     A +  P YP    H       P   F    ++  P    PP
Sbjct: 181 GQYGVYGNRNSGGGGLTAAAASATPFYPCGGGHGGVQFSQP-QPFYHHLSSYNPHHYSPP 240

Query: 244 TSIMSKPASVGPNPGSPPPPP 256
           T  M +  +     G P  PP
Sbjct: 241 TFSMQQGVT-----GFPLQPP 244

The following BLAST results are available for this feature:

BLAST of Lag0040680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891949.1	4.5e-131	93.44	probable RNA-binding protein ARP1 isoform X1 [Benincasa hispida]	[more]
XP_038891950.1	2.2e-130	93.77	probable RNA-binding protein ARP1 isoform X2 [Benincasa hispida]	[more]
XP_004143608.1	9.4e-129	94.35	probable RNA-binding protein ARP1 isoform X1 [Cucumis sativus]	[more]
XP_011654915.1	4.7e-128	94.72	probable RNA-binding protein ARP1 isoform X2 [Cucumis sativus] >KAE8647967.1 hyp...	[more]
XP_008445852.2	3.0e-127	91.12	PREDICTED: probable RNA-binding protein ARP1 isoform X1 [Cucumis melo]	[more]

BLAST of Lag0040680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	1.1e-58	52.49	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q9BX46	2.7e-22	58.82	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1	[more]
Q6GQD3	4.7e-22	57.65	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]
Q9I8B3	4.7e-22	57.65	RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1	[more]
Q5ZMA3	4.7e-22	57.65	RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2	[more]

BLAST of Lag0040680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNL6	4.5e-129	94.35	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175910 PE=4 SV...	[more]
A0A1S3BEI0	1.5e-127	91.12	probable RNA-binding protein ARP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A5A7SY01	4.3e-127	91.09	Putative RNA-binding protein ARP1 isoform X1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BD62	7.3e-127	91.44	probable RNA-binding protein ARP1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A6J1GYL2	4.1e-122	92.50	probable RNA-binding protein ARP1 isoform X6 OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Lag0040680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54770.1	7.6e-60	52.49	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G54770.2	3.4e-44	49.13	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	3.1e-37	41.98	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.2	3.4e-36	41.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.1	2.2e-35	41.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 18..90 e-value: 1.1E-23 score: 94.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 19..76 e-value: 8.7E-18 score: 63.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 17..94 score: 17.318792
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 12..98 e-value: 1.9E-24 score: 87.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 240..263
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..126
None	No IPR available	PANTHER	PTHR48024:SF23	RNA-BINDING PROTEIN ARP1-RELATED	coord: 1..246
None	No IPR available	PANTHER	PTHR48024	GEO13361P1-RELATED	coord: 1..246
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 17..92 e-value: 3.63203E-42 score: 138.132
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 15..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040680.1	Lag0040680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding