Lag0040220 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040220
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr13: 2989426 .. 2991830 (-)
RNA-Seq Expression	Lag0040220
Synteny	Lag0040220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCCCTCAATAACAACATGGTACAATATAACATCTTTCTTTTACTGTCTTTTCTCTTCACATTTCTTTAATATCATTTCACTGTTCTTCGAATTCCTCTGTTTGACGAACGTTAGTCTATCATTTCCATGTCCCATTCATTTATGGTGAAATAGTCAATGGGGATCGAAGCTTTATATCTCTGATTTAATGCCCAAAAGCTAGTTGGGTTGTAAATCTAATTTGTTGATTTGAAAATGCCCTAAAATGCTCATTTTCAGGTTGTATCGTGCGAAGTTTGTGGTGATGTTGGGTATGGCGAGGTGCTTGTAACTTGCTCCTTCTGCAAAGTAGCTCGTGAGCACATGTATGATATTGAAAAGATTTCTCACTTTTGGTGTTTGATTTTTAAAATTTTTGAAGTTAATCTGTAAATGTATATGTTATGTCTTAATCTGTTTGTGTTGCCATCTCTACCAGTTATTGACTCATAGGAAAATGTATAAACCTCAGGGAGTTCTCCCCCTCCCGTTTCAGATCTGAAACGGGAAGGGGAGGAGGAGCTCCTCCTCCCCGAAACTCCCTTCTTTTAAAAAAAAAAACAGAAGAAAGGAAGAGAAAGAAGAAGAAGGGAAGAAGAGAAGAAAAGAAGAAGAAGAAAGAAGAAAAAAAAAAATTCTGGCGCCGCCGCCGCCGTCGCCGTTCGCCGGCAGCCGGCGGCGGCCGACCACCGGAGCTGAAGAAGATGGGAGGGGGAAGGAAGAAGATGGAGGGAGAAAGAAGGTGGAGAAGAAAGAAGATGGAGAGAATTTTAAAAATAATAATATATTTAATATATTTATATTTTTTATTTAAAAAAATTAAAAATTAAATTTTTTAATTAAAATAATAGTGCCACGTCAGCTTACCGTTAGGGTTTAACAGAAAAATTGACGGCAGGGACCAAATTGCTCCTTATCTCAAACCTCAGGGGTATTTTTGTTGAATTTGAAAACTCGGGGACCAAAGTGTCACTTAACCCAAACCTCAGGGACCAAAAGTGTATTTTTCCCATATATATTTTATGATTAATTAAATGCACATGAAACCATTTTTTTAATGATTCTTCAAATGAAAAATACCAAAAGGTAAACCATGCAATATTTATTCAAGTTTATGGTAACGTTTGTAACACTTTTCAAATTTATGATAGCAAGTCCAACAATTATTTAAGTTTGAGGTGCAATTATATGAATTTCAAAGTTCAAAATAAAAAATAATACTAGTCAAATTTAGAGATAATTTTTTTTTTTTTTACATTTTTTAGAAAAAATAATAAAATGTAGAAACACTTATATTGATTATTATATTTACTTTAGGGTGGCTAATTATATATAATGATGTTGTTATTATGGTAATACATAAATTTTAGTAGTTAGTCTAAAACTTAAAAGAGAGTGACTACACTTAGCTTTCCTAAAAAAATAAATAAATAAATAAATAAAGTGACTACTAATTAATGGGTAGAATGCTCTTGAAATACTTAAAAACAAAAGGATATAATTGCCATTACTTTATTAAAAAAGAAAAACAAACTACATTCTTAAATATTTTTAGAAACTTACGCTACCTAAGTGCTATAATGTTAAATTACCACTCAATCTAATAAAAAAATTATTAAACTAAGAAAATAAATACTATTTTCAATAAATTTTTAATATAAGATAGCCAATACATATAAATAAATTAATTAAAACAATAATAGCTTGAGCTTAAGCCTAGTTCTTTTCAAGTTTTTTTTTTTTTTTTTAATATGAGTTTATAATATATATATAATAAAATATGAAGTTGTGGTGTCTTAGTTGAACATATGTGGATTGATCATTGTGTTTGATAGATGTAGATTGATCATTGAGTGGCACCTTTAGTGGTTGCAAATTTGGCAACAACCTCCTCAGACATTACCTTTTTCTTACCACCAACTACCAAGCAACCAATCATGTTTGGATGGTTAAACATTTTTGCTTATATATCTATTGTAGGTCTAGGTCATGTATTCAAATTTTCATCCATATTAGTGAAACAATAAAAAAAAAATGGTGTGATCCCTTTTTTCTTTACAATTTTTTTTTTCACATCTCATTTTTAATGGTAAATGGTCATTTTTCTGTACCATATATAAGTTGTGTGGAGGATATGCCAAGGAAGGATAATATAGGTGGGGTAAAAGGAATTTTGGTGATATGTCGTGGATAAGGAGATGGAGAAAAGTGACTCTGTTGTTGTTGTGGGTAAAAAGGGACACAGGGTTGCGATGATTGTGGCTATAAATTCGAAGCACTAGTGTTGGTTGTCTATATGGTAAAACAGGGATAACGACAAGTATTATAATGAGAAGGTAGAGGGGGTTGACGATTGGGGTATTGATTATTGGTCTAGATGA

mRNA sequence

ATGGATTCCCTCAATAACAACATGGTTGTATCGTGCGAAGTTTGTGGTGATGTTGGGTATGGCGAGGTGCTTGTAACTTGCTCCTTCTGCAAAGTAGCTCGTGAGCACATGGAGTTCTCCCCCTCCCGTTTCAGATCTGAAACGGGAAGGGGAGGAGGAGCTCCTCCTCCCCGAAACTCCCTTCTTTTAAAAAAAAAAACAGAAGAAAGGAAGAGAAAGAAGAAGAAGGGAAGAAGAGAAGAAAAGAAGAAGAAGAAAGAAGAAAAAAAAAAATTCTGGCGCCGCCGCCGCCGTCGCCGTTCGCCGGCAGCCGGCGGCGGCCGACCACCGGAGCTGAAGAAGATGGGAGGGGGAAGGAAGAAGATGGAGGGAGAAAGAAGGGATAACGACAAGTATTATAATGAGAAGGTAGAGGGGGTTGACGATTGGGGTATTGATTATTGGTCTAGATGA

Coding sequence (CDS)

ATGGATTCCCTCAATAACAACATGGTTGTATCGTGCGAAGTTTGTGGTGATGTTGGGTATGGCGAGGTGCTTGTAACTTGCTCCTTCTGCAAAGTAGCTCGTGAGCACATGGAGTTCTCCCCCTCCCGTTTCAGATCTGAAACGGGAAGGGGAGGAGGAGCTCCTCCTCCCCGAAACTCCCTTCTTTTAAAAAAAAAAACAGAAGAAAGGAAGAGAAAGAAGAAGAAGGGAAGAAGAGAAGAAAAGAAGAAGAAGAAAGAAGAAAAAAAAAAATTCTGGCGCCGCCGCCGCCGTCGCCGTTCGCCGGCAGCCGGCGGCGGCCGACCACCGGAGCTGAAGAAGATGGGAGGGGGAAGGAAGAAGATGGAGGGAGAAAGAAGGGATAACGACAAGTATTATAATGAGAAGGTAGAGGGGGTTGACGATTGGGGTATTGATTATTGGTCTAGATGA

Protein sequence

MDSLNNNMVVSCEVCGDVGYGEVLVTCSFCKVAREHMEFSPSRFRSETGRGGGAPPPRNSLLLKKKTEERKRKKKKGRREEKKKKKEEKKKFWRRRRRRRSPAAGGGRPPELKKMGGGRKKMEGERRDNDKYYNEKVEGVDDWGIDYWSR

Homology

[Close]

BLAST of Lag0040220 vs. NCBI nr
Match: XP_031737075.1 (uncharacterized protein LOC105435920 isoform X1 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-05
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 1  MDSLNNNMVVSCEVCGDVGYGEVLVTCSFCKVAREHMEFSPS 43
          MD+ N NM   C+VCGD+GY EV+ TCS CK+AREH+ +  S
Sbjct: 1  MDAHNENMEEKCDVCGDIGYNEVIFTCSNCKIAREHISYCMS 42

[Close]

BLAST of Lag0040220 vs. NCBI nr
Match: XP_031737083.1 (uncharacterized protein LOC105435920 isoform X3 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-05
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 1  MDSLNNNMVVSCEVCGDVGYGEVLVTCSFCKVAREHMEFSPS 43
          MD+ N NM   C+VCGD+GY EV+ TCS CK+AREH+ +  S
Sbjct: 1  MDAHNENMEEKCDVCGDIGYNEVIFTCSNCKIAREHISYCMS 42

[Close]

BLAST of Lag0040220 vs. NCBI nr
Match: KGN66039.2 (hypothetical protein Csa_020117 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 7.3e-05
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 1  MDSLNNNMVVSCEVCGDVGYGEVLVTCSFCKVAREHM 38
          MD+ N NM   C+VCGD+GY EV+ TCS CK+AREH+
Sbjct: 1  MDAHNENMEEKCDVCGDIGYNEVIFTCSNCKIAREHI 37

[Close]

BLAST of Lag0040220 vs. NCBI nr
Match: XP_031737080.1 (uncharacterized protein LOC105435920 isoform X2 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 7.3e-05
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 1  MDSLNNNMVVSCEVCGDVGYGEVLVTCSFCKVAREHM 38
          MD+ N NM   C+VCGD+GY EV+ TCS CK+AREH+
Sbjct: 1  MDAHNENMEEKCDVCGDIGYNEVIFTCSNCKIAREHI 37

[Close]

BLAST of Lag0040220 vs. NCBI nr
Match: XP_016902110.1 (PREDICTED: uncharacterized protein LOC103497199 isoform X3 [Cucumis melo])

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-04
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 1  MDSLNNNMVVSCEVCGDVGYGEVLVTCSFCKVAREHM 38
          MD  N NM   C+VCGD+GY EV+ TCS CK+AREH+
Sbjct: 1  MDPHNENMEEMCDVCGDIGYNEVIFTCSNCKIAREHI 37

The following BLAST results are available for this feature:

BLAST of Lag0040220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737075.1	1.9e-05	57.14	uncharacterized protein LOC105435920 isoform X1 [Cucumis sativus]	[more]
XP_031737083.1	1.9e-05	57.14	uncharacterized protein LOC105435920 isoform X3 [Cucumis sativus]	[more]
KGN66039.2	7.3e-05	62.16	hypothetical protein Csa_020117 [Cucumis sativus]	[more]
XP_031737080.1	7.3e-05	62.16	uncharacterized protein LOC105435920 isoform X2 [Cucumis sativus]	[more]
XP_016902110.1	1.6e-04	62.16	PREDICTED: uncharacterized protein LOC103497199 isoform X3 [Cucumis melo]	[more]

BLAST of Lag0040220 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 63..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040220.1	Lag0040220.1	mRNA