Sed0014881 (gene) Chayote v1

Overview


Name	Sed0014881
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Pentatricopeptide repeat-containing protein
Location	LG09: 33857136 .. 33858648 (-)
RNA-Seq Expression	Sed0014881
Synteny	Sed0014881

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTCATCTGGGCTTTTTCCTGATTTCTTCACGCTTAATATTTTGCTTAATTGCCTTTGTAATGTCAATCGGGTTACCGAAGGTCTCGCGGCCATGGCAGGGATTTTAAGGAGAGGCTATATTCCTGATGTGGTCACATATACATCCCCTGATTAAGGGCATGTGTAGGGAGAATAGGATTAGGGAAGCCACACGCTTGTTTATGACAATGCAAAAGTTGGGTTGTAACCCAAATGAGACCACGTACGAGACTTTAATCAATGGGCCTTGTCAAACAGGGAACACGAACATTGCTCTTAAGTTGCACGAGGAAATGCTCAATGCAACTGCTCAATATGGCATTAGTTGTAAGCTTAATGTTATCATTTATAGTACTATTATCGTTGGACTCTGTAAAGATGGACAGGTAGACAAAGCAATGGAAATGTTTGAGGAGATGAAAGCTCAGGGAGTGCTTCCTAATGTGATTTCTTATACTTTTTGTATTCATGGATTTTGTAATGGTGGAAAGTGGGAGGAGGCTAAACTTCTATTCAATGAGATGGTGGATCACGGTGTACGTCCAAATGTGGCTACTTTTAATGTGATTATGGATATGCTTTGTAAGAAAGGAAAGGTTATCGAGGCTAAGAAATTGTGGGAGGTCATGATTCAAAGAGGTAATGTTCCTGATTTGTTTTCTTACAATATATTGATGGACGGGTTCTGTTTGGTTGGTGACTTAAAGAGTGCAAAAAAGTTGTTTGTTAGTATGACAAGTAAGGGTTGTGAATCAAATGTGATAAGCTATGGTGTGCTAATCAATGGGTATTGCAAAAATGGGACGGTGGAAGAGGCAATGGACCTTTACAACGAAATTCTTCAAGTAGGAGTTAGGCCAGATTTGATAACATATAATGCCTTGTTGACAGGTCTTTTCTTGGCCGACAAGGTTGATGATGCAAAAAAAATGTTTGGTGTCATTCAAGATCTTCGTATGGCACTAAGTTCATGTACGGTTAGTATTTTTTTGGATGGGCTATGTAAGAGTGGTTGTTTGTTTGAAGCAATTGAACTTTTTAATAAACTCTCATACGACTTGAAGTTGAATATCGATATCCTTAATTGTGTTATCAATGGCCTATGCAAAGTAGGAAAACTTGAAATGGCTTGGGAGCTTTTCAACAAATTGTCTCATGAAGGGCTTCTACCCGATGTCGTGACTTATAACACTATGATCCATGGGTGTTGTATAAATGGACAAATAGAAAAAGCAAATGATCTATTTCAAAAGATGGAAGAAAATGGTTGTATTCCTGATGTAATTACTTTTAATACACTCCTAAGTGGTTTCCATCTAAGTAATAAACGAGAGCAAGTGGTTGGACTTTTACACAAGATGGCTGAGAAAAATGTGTTGCCAGATGAATACAGTTGCAACATAGTCTTAGACATGCTTTCTATAGATGAAAAGTATCGTGAATGTTTGAACTTGCTTCCAACATTTCGAGTCCAAGGCCATCAAACTTGA

mRNA sequence

ATGACCTCATCTGGGCTTTTTCCTGATTTCTTCACGCTTAATATTTTGCTTAATTGCCTTTGTAATGTCAATCGGGTTACCGAAGGTCTCGCGGCCATGGCAGGGATTTTAAGGAGAGGCTATATTCCTGATGTGTGGGAGGAGGCTAAACTTCTATTCAATGAGATGGTGGATCACGGAAAGGTTATCGAGGCTAAGAAATTGTGGGAGGTCATGATTCAAAGAGGTAATGTTCCTGATTTGTTTTCTTACAATATATTGATGGACGGGTTCTGTTTGGTTGGTGACTTAAAGAGTGCAAAAAAGTTGTTTGTTAGTATGACAAGTAAGGGTTGTGAATCAAATGTGATAAGCTATGGTGTGCTAATCAATGGGTATTGCAAAAATGGGACGGTGGAAGAGGCAATGGACCTTTACAACGAAATTCTTCAAGTAGGAGTTAGGCCAGATTTGATAACATATAATGCCTTGTTGACAGGTCTTTTCTTGGCCGACAAGGTTGATGATGCAAAAAAAATGTTTGGTGTCATTCAAGATCTTCGTATGGCACTAAGTTCATGTACGGTTAGTATTTTTTTGGATGGGCTATGTAAGAGTGGTTGTTTGTTTGAAGCAATTGAACTTTTTAATAAACTCTCATACGACTTGAAGTTGAATATCGATATCCTTAATTGTGTTATCAATGGCCTATGCAAAGTAGGAAAACTTGAAATGGCTTGGGAGCTTTTCAACAAATTGTCTCATGAAGGGCTTCTACCCGATGTCGTGACTTATAACACTATGATCCATGGGTGTTGTATAAATGGACAAATAGAAAAAGCAAATGATCTATTTCAAAAGATGGAAGAAAATGGTTGTATTCCTGATGTAATTACTTTTAATACACTCCTAAGTGGTTTCCATCTAAGTAATAAACGAGAGCAAGTGGTTGGACTTTTACACAAGATGGCTGAGAAAAATGTGTTGCCAGATGAATACAGTTGCAACATAGTCTTAGACATGCTTTCTATAGATGAAAAGTATCGTGAATGTTTGAACTTGCTTCCAACATTTCGAGTCCAAGGCCATCAAACTTGA

Coding sequence (CDS)

ATGACCTCATCTGGGCTTTTTCCTGATTTCTTCACGCTTAATATTTTGCTTAATTGCCTTTGTAATGTCAATCGGGTTACCGAAGGTCTCGCGGCCATGGCAGGGATTTTAAGGAGAGGCTATATTCCTGATGTGTGGGAGGAGGCTAAACTTCTATTCAATGAGATGGTGGATCACGGAAAGGTTATCGAGGCTAAGAAATTGTGGGAGGTCATGATTCAAAGAGGTAATGTTCCTGATTTGTTTTCTTACAATATATTGATGGACGGGTTCTGTTTGGTTGGTGACTTAAAGAGTGCAAAAAAGTTGTTTGTTAGTATGACAAGTAAGGGTTGTGAATCAAATGTGATAAGCTATGGTGTGCTAATCAATGGGTATTGCAAAAATGGGACGGTGGAAGAGGCAATGGACCTTTACAACGAAATTCTTCAAGTAGGAGTTAGGCCAGATTTGATAACATATAATGCCTTGTTGACAGGTCTTTTCTTGGCCGACAAGGTTGATGATGCAAAAAAAATGTTTGGTGTCATTCAAGATCTTCGTATGGCACTAAGTTCATGTACGGTTAGTATTTTTTTGGATGGGCTATGTAAGAGTGGTTGTTTGTTTGAAGCAATTGAACTTTTTAATAAACTCTCATACGACTTGAAGTTGAATATCGATATCCTTAATTGTGTTATCAATGGCCTATGCAAAGTAGGAAAACTTGAAATGGCTTGGGAGCTTTTCAACAAATTGTCTCATGAAGGGCTTCTACCCGATGTCGTGACTTATAACACTATGATCCATGGGTGTTGTATAAATGGACAAATAGAAAAAGCAAATGATCTATTTCAAAAGATGGAAGAAAATGGTTGTATTCCTGATGTAATTACTTTTAATACACTCCTAAGTGGTTTCCATCTAAGTAATAAACGAGAGCAAGTGGTTGGACTTTTACACAAGATGGCTGAGAAAAATGTGTTGCCAGATGAATACAGTTGCAACATAGTCTTAGACATGCTTTCTATAGATGAAAAGTATCGTGAATGTTTGAACTTGCTTCCAACATTTCGAGTCCAAGGCCATCAAACTTGA

Protein sequence

MTSSGLFPDFFTLNILLNCLCNVNRVTEGLAAMAGILRRGYIPDVWEEAKLLFNEMVDHGKVIEAKKLWEVMIQRGNVPDLFSYNILMDGFCLVGDLKSAKKLFVSMTSKGCESNVISYGVLINGYCKNGTVEEAMDLYNEILQVGVRPDLITYNALLTGLFLADKVDDAKKMFGVIQDLRMALSSCTVSIFLDGLCKSGCLFEAIELFNKLSYDLKLNIDILNCVINGLCKVGKLEMAWELFNKLSHEGLLPDVVTYNTMIHGCCINGQIEKANDLFQKMEENGCIPDVITFNTLLSGFHLSNKREQVVGLLHKMAEKNVLPDEYSCNIVLDMLSIDEKYRECLNLLPTFRVQGHQT

Homology

[Close]

BLAST of Sed0014881 vs. NCBI nr
Match: XP_022992036.1 (pentatricopeptide repeat-containing protein At1g63330-like [Cucurbita maxima])

HSP 1 Score: 487.6 bits (1254), Expect = 8.9e-134
Identity = 262/502 (52.19%), Postives = 308/502 (61.35%), Query Frame = 0


Query: 1   MTSSGLFPDFFTLNILLNCLCNVNRVTEGLAAMAGILRRGYIPDV--------------- 60
           M+ +GL P++ TLNILLNCLCNVNR++EGLAAMAGI+RRGY+P++               
Sbjct: 138 MSLAGLLPNYITLNILLNCLCNVNRISEGLAAMAGIIRRGYVPNIVTYTSLIKGLCMEHR 197

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 198 ISEATRLFMRMQKLGCRPNVITYGTLIKGLCQTGNTNIALKLHEEMLNGTGRYGISCKPN 257

Query: 121 ---------------------------------------------------WEEAKLLFN 180
                                                              WEEAK LFN
Sbjct: 258 VICYSTIIDGLCKDGREDKARELFEEMKARRMLPDVISYSSLIHGFCNGGKWEEAKCLFN 317

Query: 181 EMVD-------------------HGKVIEAKKLWEVMIQRGNVPDLFSYNILMDGFCLVG 240
           EMVD                    GKVIEA KL EVMIQRGNVPDLF YN LMDGFCLV 
Sbjct: 318 EMVDLGIQPNAVTFNVLMDILCKAGKVIEANKLLEVMIQRGNVPDLFIYNTLMDGFCLVS 377

Query: 241 DLKSAKKLFVSMTSKGCESNVISYGVLINGYCKNGTVEEAMDLYNEILQVGVRPDLITYN 300
           DL+SA++LF+SM SKGCE NVISY VLINGYCKN  VEEAM +YNE+LQVGV+P +ITYN
Sbjct: 378 DLESARELFLSMPSKGCEPNVISYNVLINGYCKNWKVEEAMKIYNEMLQVGVKPSVITYN 437

Query: 301 ALLTGLFLADKVDDAKKMFGVIQDLRMALSSCTVSIFLDGLCKSGCLFEAIELFNKLSYD 358
           ALLTGLF A KVDDAKK+FGVIQ   +  SS T+SIF+DGLCK+ CL EA+E+FN+LSY+
Sbjct: 438 ALLTGLFQAGKVDDAKKIFGVIQAHGLVPSSSTLSIFVDGLCKNDCLLEAMEIFNELSYN 497

[Close]

BLAST of Sed0014881 vs. NCBI nr
Match: XP_022953742.1 (putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Cucurbita moschata])

HSP 1 Score: 485.0 bits (1247), Expect = 5.8e-133
Identity = 260/502 (51.79%), Postives = 310/502 (61.75%), Query Frame = 0


Query: 1   MTSSGLFPDFFTLNILLNCLCNVNRVTEGLAAMAGILRRGYIPDV--------------- 60
           M+ +GL P++ TLNILLNCLCNVNR++EGLAAMAGI+RRG+IP++               
Sbjct: 138 MSLAGLLPNYITLNILLNCLCNVNRISEGLAAMAGIIRRGFIPNIVTYTSLIKGLCMEHR 197

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 198 ISEATRLFMRMQKLGCRPNVITYGTLIKGLCQTGNTNIALKLHEEMLNGTGRYGISCKPN 257

Query: 121 ---------------------------------------------------WEEAKLLFN 180
                                                              WEEAK LFN
Sbjct: 258 VISYSTIIDGLCKDGREDKARELFEEMKARRMLPDVISYSSLIHGFCNGGKWEEAKCLFN 317

Query: 181 EMVD-------------------HGKVIEAKKLWEVMIQRGNVPDLFSYNILMDGFCLVG 240
           EMVD                    GKVIEA +L EVMIQRGNVPDLF+YN LMDGFCLV 
Sbjct: 318 EMVDLGIQPNAVTFNVLMDILCKAGKVIEANELLEVMIQRGNVPDLFTYNTLMDGFCLVS 377

Query: 241 DLKSAKKLFVSMTSKGCESNVISYGVLINGYCKNGTVEEAMDLYNEILQVGVRPDLITYN 300
           DL SA++LF+SM SKGCE NVISY VLINGYCKN  VEEAM +YNE+LQVG++P +ITYN
Sbjct: 378 DLDSARELFLSMPSKGCEPNVISYNVLINGYCKNWKVEEAMKIYNEMLQVGIKPSMITYN 437

Query: 301 ALLTGLFLADKVDDAKKMFGVIQDLRMALSSCTVSIFLDGLCKSGCLFEAIELFNKLSYD 358
           ALLTGLF A KV+DAKK+FGVIQ   +  SS T+SIF+DGLCK+ CL EA+E+FN+LSY+
Sbjct: 438 ALLTGLFQAGKVNDAKKIFGVIQAHGLVPSSSTLSIFVDGLCKNDCLLEAMEIFNELSYN 497

[Close]

BLAST of Sed0014881 vs. NCBI nr
Match: KAG7014482.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 482.3 bits (1240), Expect = 3.7e-132
Identity = 259/502 (51.59%), Postives = 309/502 (61.55%), Query Frame = 0


Query: 1   MTSSGLFPDFFTLNILLNCLCNVNRVTEGLAAMAGILRRGYIPDV--------------- 60
           M+ +GL P++ TLNILLNCLCNVNR++EGLAAMAGI+RRG+IP++               
Sbjct: 138 MSLAGLLPNYITLNILLNCLCNVNRISEGLAAMAGIIRRGFIPNIVTYTSLIKGLCMEHR 197

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 198 ISEATRLFMRMQKLGCRPNVITYGTLIKGLCQTGNTNIALKLHEEMLNGTGRYGISCKPN 257

Query: 121 ---------------------------------------------------WEEAKLLFN 180
                                                              WEEAK LFN
Sbjct: 258 VISYSTIIDGLCKDGREDKARELFEEMKARRMLPDVISYSSLIHGFCNGGKWEEAKCLFN 317

Query: 181 EMVD-------------------HGKVIEAKKLWEVMIQRGNVPDLFSYNILMDGFCLVG 240
           EMVD                    GKVIEA +L EVMIQRGNVPDLF+YN LMDGFCLV 
Sbjct: 318 EMVDLGIQPNAVTFNVLMDILCKAGKVIEANELLEVMIQRGNVPDLFTYNTLMDGFCLVS 377

Query: 241 DLKSAKKLFVSMTSKGCESNVISYGVLINGYCKNGTVEEAMDLYNEILQVGVRPDLITYN 300
           DL SA++LF+SM SKGCE NVISY VLINGYCKN  VEEAM +YNE+LQVG++P +ITYN
Sbjct: 378 DLDSARELFLSMPSKGCEPNVISYNVLINGYCKNWKVEEAMKIYNEMLQVGIKPSVITYN 437

Query: 301 ALLTGLFLADKVDDAKKMFGVIQDLRMALSSCTVSIFLDGLCKSGCLFEAIELFNKLSYD 358
           ALLTGLF A KV+DAKK+FGVIQ   +  SS T+SIF+DGLCK+ CL EA+E+FN+LSY+
Sbjct: 438 ALLTGLFQAGKVNDAKKIFGVIQAHGLVPSSSTLSIFVDGLCKNDCLLEAMEIFNELSYN 497

[Close]

BLAST of Sed0014881 vs. NCBI nr
Match: KAG6575949.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 482.3 bits (1240), Expect = 3.7e-132
Identity = 259/502 (51.59%), Postives = 309/502 (61.55%), Query Frame = 0


Query: 1   MTSSGLFPDFFTLNILLNCLCNVNRVTEGLAAMAGILRRGYIPDV--------------- 60
           M+ +GL P++ TLNILLNCLCNVNR++EGLAAMAGI+RRG+IP++               
Sbjct: 138 MSLAGLLPNYITLNILLNCLCNVNRISEGLAAMAGIIRRGFIPNIVTYTSLIKGLCMEHR 197

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 198 ISEATRLFMRMQKLGCRPNVITYGTLIKGLCQTGNTNIALKLHEEMLNGTGRYGISCKPN 257

Query: 121 ---------------------------------------------------WEEAKLLFN 180
                                                              WEEAK LFN
Sbjct: 258 VISYSTIIDGLCKDGREDKARELFEEMKARRMLPDVISYSSLIHGFCNGGKWEEAKCLFN 317

Query: 181 EMVD-------------------HGKVIEAKKLWEVMIQRGNVPDLFSYNILMDGFCLVG 240
           EMVD                    GKVIEA +L EVMIQRGNVPDLF+YN LMDGFCLV 
Sbjct: 318 EMVDLGIQPNAVTFNVLMDILCKAGKVIEANELLEVMIQRGNVPDLFTYNTLMDGFCLVS 377

Query: 241 DLKSAKKLFVSMTSKGCESNVISYGVLINGYCKNGTVEEAMDLYNEILQVGVRPDLITYN 300
           DL SA++LF+SM SKGCE NVISY VLINGYCKN  VEEAM +YNE+LQVG++P +ITYN
Sbjct: 378 DLDSARELFLSMPSKGCEPNVISYNVLINGYCKNWKVEEAMKIYNEMLQVGIKPSVITYN 437

Query: 301 ALLTGLFLADKVDDAKKMFGVIQDLRMALSSCTVSIFLDGLCKSGCLFEAIELFNKLSYD 358
           ALLTGLF A KV+DAKK+FGVIQ   +  SS T+SIF+DGLCK+ CL EA+E+FN+LSY+
Sbjct: 438 ALLTGLFQAGKVNDAKKIFGVIQAHGLVPSSSTLSIFVDGLCKNDCLLEAMEIFNELSYN 497

[Close]

BLAST of Sed0014881 vs. NCBI nr
Match: XP_023548637.1 (pentatricopeptide repeat-containing protein At1g63330-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 480.7 bits (1236), Expect = 1.1e-131
Identity = 259/502 (51.59%), Postives = 308/502 (61.35%), Query Frame = 0


Query: 1   MTSSGLFPDFFTLNILLNCLCNVNRVTEGLAAMAGILRRGYIPDV--------------- 60
           M+ +GL P++ TLNILLNCLCNVNR++EGLAAMAGI+RRG+IP++               
Sbjct: 138 MSLAGLLPNYITLNILLNCLCNVNRISEGLAAMAGIIRRGFIPNIVTYTSLIKGLCMEHR 197

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 198 ISEATRLFMRMQKLGCRPNVITYGTLIKGLCQTGNTNIALKLHEEMLNGTGRYGISCKPN 257

Query: 121 ---------------------------------------------------WEEAKLLFN 180
                                                              WEEAK LFN
Sbjct: 258 VICYSTIIDGLCKDGREDKARELFEEMKARRMLPDVISYSSLIHGFCNGGKWEEAKCLFN 317

Query: 181 EMVD-------------------HGKVIEAKKLWEVMIQRGNVPDLFSYNILMDGFCLVG 240
           EMVD                    GKVIEA +L EVMIQRGN PDLF+YN LMDGFCLV 
Sbjct: 318 EMVDLGIQPNAVTFNVLMDILCKAGKVIEANELLEVMIQRGNAPDLFTYNTLMDGFCLVS 377

Query: 241 DLKSAKKLFVSMTSKGCESNVISYGVLINGYCKNGTVEEAMDLYNEILQVGVRPDLITYN 300
           DL SA++LF+SM SKGCE NVISY VLINGYCKN  VEEAM +YNE+LQVG++P +ITYN
Sbjct: 378 DLDSARELFLSMPSKGCEPNVISYNVLINGYCKNWKVEEAMKIYNEMLQVGIKPSVITYN 437

Query: 301 ALLTGLFLADKVDDAKKMFGVIQDLRMALSSCTVSIFLDGLCKSGCLFEAIELFNKLSYD 358
           ALLTGLF A KVDDAKK+FGVIQ   +  SS T+SIF+DGLCK+ CL EA+E+FN+LSY+
Sbjct: 438 ALLTGLFQAGKVDDAKKIFGVIQAHGLVPSSSTLSIFVDGLCKNDCLLEAMEIFNELSYN 497

[Close]

BLAST of Sed0014881 vs. ExPASy Swiss-Prot
Match: Q6NQ83 (Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g22470 PE=1 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 2.2e-63
Identity = 133/350 (38.00%), Postives = 202/350 (57.71%), Query Frame = 0


Query: 1   MTSSGLFPDFFTLNILLNCLCNVNRVTEGLAAMAGILRRGYIPDVWEEAKLLFNEMVDHG 60
           M   G+  D  T + L+  LCN  +  +G   +  ++ R  IPDV   + L+ +  V  G
Sbjct: 271 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALI-DVFVKEG 330

Query: 61  KVIEAKKLWEVMIQRGNVPDLFSYNILMDGFCLVGDLKSAKKLFVSMTSKGCESNVISYG 120
           K++EAK+L+  MI RG  PD  +YN L+DGFC    L  A ++F  M SKGCE ++++Y 
Sbjct: 331 KLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYS 390

Query: 121 VLINGYCKNGTVEEAMDLYNEILQVGVRPDLITYNALLTGLFLADKVDDAKKMFGVIQDL 180
           +LIN YCK   V++ M L+ EI   G+ P+ ITYN L+ G   + K++ AK++F  +   
Sbjct: 391 ILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSR 450

Query: 181 RMALSSCTVSIFLDGLCKSGCLFEAIELFNKLSYD-LKLNIDILNCVINGLCKVGKLEMA 240
            +  S  T  I LDGLC +G L +A+E+F K+    + L I I N +I+G+C   K++ A
Sbjct: 451 GVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDA 510

Query: 241 WELFNKLSHEGLLPDVVTYNTMIHGCCINGQIEKANDLFQKMEENGCIPDVITFNTLLSG 300
           W LF  LS +G+ PDVVTYN MI G C  G + +A+ LF+KM+E+GC PD  T+N L+  
Sbjct: 511 WSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRA 570

Query: 301 FHLSNKREQVVGLLHKMAEKNVLPDEYSCNIVLDMLS---IDEKYRECLN 347
               +     V L+ +M       D  +  +V+DMLS   +D+ + + L+
Sbjct: 571 HLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSDRRLDKSFLDMLS 619

[Close]

BLAST of Sed0014881 vs. ExPASy Swiss-Prot
Match: Q9CAM8 (Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana OX=3702 GN=At1g63150 PE=2 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 4.7e-61
Identity = 132/353 (37.39%), Postives = 203/353 (57.51%), Query Frame = 0


Query: 1   MTSSGLFPDFFTLNILLNCLCNVNRVTEGLAAMAGILRRGYIPDVWEEAKLLFNEMVD-- 60
           M + G+ P+  T N L+NCLCN  R ++    ++ +L +   P+V     + FN ++D  
Sbjct: 284 METKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNV-----VTFNALIDAF 343

Query: 61  --HGKVIEAKKLWEVMIQRGNVPDLFSYNILMDGFCLVGDLKSAKKLFVSMTSKGCESNV 120
              GK++EA+KL E MIQR   PD  +YN+L++GFC+   L  AK++F  M SK C  N+
Sbjct: 344 FKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNI 403

Query: 121 ISYGVLINGYCKNGTVEEAMDLYNEILQVGVRPDLITYNALLTGLFLADKVDDAKKMFGV 180
            +Y  LING+CK   VE+ ++L+ E+ Q G+  + +TY  ++ G F A   D A+ +F  
Sbjct: 404 QTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQ 463

Query: 181 IQDLRMALSSCTVSIFLDGLCKSGCLFEAIELFNKL-SYDLKLNIDILNCVINGLCKVGK 240
           +   R+     T SI L GLC  G L  A+ +F  L   +++LNI I N +I G+CK GK
Sbjct: 464 MVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGK 523

Query: 241 LEMAWELFNKLSHEGLLPDVVTYNTMIHGCCINGQIEKANDLFQKMEENGCIPDVITFNT 300
           +  AW+LF  LS   + PDVVTYNTMI G C    +++A+DLF+KM+E+G +P+  T+NT
Sbjct: 524 VGEAWDLFCSLS---IKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNT 583

Query: 301 LLSGFHLSNKREQVVGLLHKMAEKNVLPDEYSCNIVLDMLSIDEKYRECLNLL 349
           L+        R     L+ +M     + D  + ++V +ML      +  LN+L
Sbjct: 584 LIRANLRDCDRAASAELIKEMRSSGFVGDASTISLVTNMLHDGRLDKSFLNML 628

[Close]

BLAST of Sed0014881 vs. ExPASy Swiss-Prot
Match: Q9LQ16 (Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana OX=3702 GN=At1g62910 PE=2 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.4e-60
Identity = 128/349 (36.68%), Postives = 205/349 (58.74%), Query Frame = 0


Query: 1   MTSSGLFPDFFTLNILLNCLCNVNRVTEGLAAMAGILRRGYIPDVWEEAKLLFNEMVDHG 60
           M + G+ PD FT + L++CLCN  R ++    ++ ++ R   P+V   + L+ +  V  G
Sbjct: 284 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI-DAFVKEG 343

Query: 61  KVIEAKKLWEVMIQRGNVPDLFSYNILMDGFCLVGDLKSAKKLFVSMTSKGCESNVISYG 120
           K++EA+KL++ MI+R   PD+F+Y+ L++GFC+   L  AK +F  M SK C  NV++Y 
Sbjct: 344 KLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYS 403

Query: 121 VLINGYCKNGTVEEAMDLYNEILQVGVRPDLITYNALLTGLFLADKVDDAKKMFGVIQDL 180
            LI G+CK   VEE M+L+ E+ Q G+  + +TY  L+ G F A   D+A+ +F  +  +
Sbjct: 404 TLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSV 463

Query: 181 RMALSSCTVSIFLDGLCKSGCLFEAIELFNKLSYD-LKLNIDILNCVINGLCKVGKLEMA 240
            +  +  T +I LDGLCK+G L +A+ +F  L    ++ +I   N +I G+CK GK+E  
Sbjct: 464 GVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDG 523

Query: 241 WELFNKLSHEGLLPDVVTYNTMIHGCCINGQIEKANDLFQKMEENGCIPDVITFNTLLSG 300
           WELF  LS +G+ P+V+ YNTMI G C  G  E+A+ L +KM+E+G +P+  T+NTL+  
Sbjct: 524 WELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRA 583

Query: 301 FHLSNKREQVVGLLHKMAEKNVLPDEYSCNIVLDMLSIDEKYRECLNLL 349
                 RE    L+ +M       D  +  +V +ML      +  L++L
Sbjct: 584 RLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLDKSFLDML 631

[Close]

BLAST of Sed0014881 vs. ExPASy Swiss-Prot
Match: Q9LQ14 (Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g62930 PE=2 SV=2)

HSP 1 Score: 231.1 bits (588), Expect = 2.0e-59
Identity = 128/350 (36.57%), Postives = 206/350 (58.86%), Query Frame = 0


Query: 1   MTSSGLFPDFFTLNILLNCLCNVNRVTEGLAAMAGILRRGYIPDVWEEAKLLFNEMVDHG 60
           M + G+ P+  T N L+ CLCN  R ++    ++ ++ R   P+V   + L+ +  V  G
Sbjct: 281 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI-DAFVKEG 340

Query: 61  KVIEAKKLWEVMIQRGNVPDLFSYNILMDGFCLVGDLKSAKKLFVSMTSKGCESNVISYG 120
           K++EA+KL++ MI+R   PD+F+Y+ L++GFC+   L  AK +F  M SK C  NV++Y 
Sbjct: 341 KLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYN 400

Query: 121 VLINGYCKNGTVEEAMDLYNEILQVGVRPDLITYNALLTGLFLADKVDDAKKMFGVIQDL 180
            LI G+CK   VEE M+L+ E+ Q G+  + +TYN L+ GLF A   D A+K+F  +   
Sbjct: 401 TLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSD 460

Query: 181 RMALSSCTVSIFLDGLCKSGCLFEAIELFNKLSYD-LKLNIDILNCVINGLCKVGKLEMA 240
            +     T SI LDGLCK G L +A+ +F  L    ++ +I   N +I G+CK GK+E  
Sbjct: 461 GVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDG 520

Query: 241 WELFNKLSHEGLLPDVVTYNTMIHGCCINGQIEKANDLFQKMEENGCIPDVITFNTLLSG 300
           W+LF  LS +G+ P+V+ Y TMI G C  G  E+A+ LF++M+E+G +P+  T+NTL+  
Sbjct: 521 WDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRA 580

Query: 301 FHLSNKREQVVGLLHKMAEKNVLPDEYSCNIVLDML---SIDEKYRECLN 347
                 +     L+ +M     + D  + ++V++ML    +++ Y E L+
Sbjct: 581 RLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKSYLEMLS 629

[Close]

BLAST of Sed0014881 vs. ExPASy Swiss-Prot
Match: Q9SXD1 (Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g62670 PE=3 SV=2)

HSP 1 Score: 224.9 bits (572), Expect = 1.4e-57
Identity = 123/349 (35.24%), Postives = 203/349 (58.17%), Query Frame = 0


Query: 1   MTSSGLFPDFFTLNILLNCLCNVNRVTEGLAAMAGILRRGYIPDVWEEAKLLFNEMVDHG 60
           M + G+ P+  T + L++CLCN  R ++    ++ ++ R   PDV+  + L+ +  V  G
Sbjct: 282 METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALI-DAFVKEG 341

Query: 61  KVIEAKKLWEVMIQRGNVPDLFSYNILMDGFCLVGDLKSAKKLFVSMTSKGCESNVISYG 120
           K++EA+KL++ M++R   P + +Y+ L++GFC+   L  AK++F  M SK C  +V++Y 
Sbjct: 342 KLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYN 401

Query: 121 VLINGYCKNGTVEEAMDLYNEILQVGVRPDLITYNALLTGLFLADKVDDAKKMFGVIQDL 180
            LI G+CK   VEE M+++ E+ Q G+  + +TYN L+ GLF A   D A+++F  +   
Sbjct: 402 TLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSD 461

Query: 181 RMALSSCTVSIFLDGLCKSGCLFEAIELFNKLSYD-LKLNIDILNCVINGLCKVGKLEMA 240
            +  +  T +  LDGLCK+G L +A+ +F  L    ++  I   N +I G+CK GK+E  
Sbjct: 462 GVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 521

Query: 241 WELFNKLSHEGLLPDVVTYNTMIHGCCINGQIEKANDLFQKMEENGCIPDVITFNTLLSG 300
           W+LF  LS +G+ PDVV YNTMI G C  G  E+A+ LF++M+E+G +P+   +NTL+  
Sbjct: 522 WDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRA 581

Query: 301 FHLSNKREQVVGLLHKMAEKNVLPDEYSCNIVLDMLSIDEKYRECLNLL 349
                 RE    L+ +M       D  +  +V +ML      +  L++L
Sbjct: 582 RLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLDKSFLDML 629

[Close]

BLAST of Sed0014881 vs. ExPASy TrEMBL
Match: A0A6J1JSG4 (pentatricopeptide repeat-containing protein At1g63330-like OS=Cucurbita maxima OX=3661 GN=LOC111488506 PE=4 SV=1)

HSP 1 Score: 487.6 bits (1254), Expect = 4.3e-134
Identity = 262/502 (52.19%), Postives = 308/502 (61.35%), Query Frame = 0


Query: 1   MTSSGLFPDFFTLNILLNCLCNVNRVTEGLAAMAGILRRGYIPDV--------------- 60
           M+ +GL P++ TLNILLNCLCNVNR++EGLAAMAGI+RRGY+P++               
Sbjct: 138 MSLAGLLPNYITLNILLNCLCNVNRISEGLAAMAGIIRRGYVPNIVTYTSLIKGLCMEHR 197

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 198 ISEATRLFMRMQKLGCRPNVITYGTLIKGLCQTGNTNIALKLHEEMLNGTGRYGISCKPN 257

Query: 121 ---------------------------------------------------WEEAKLLFN 180
                                                              WEEAK LFN
Sbjct: 258 VICYSTIIDGLCKDGREDKARELFEEMKARRMLPDVISYSSLIHGFCNGGKWEEAKCLFN 317

Query: 181 EMVD-------------------HGKVIEAKKLWEVMIQRGNVPDLFSYNILMDGFCLVG 240
           EMVD                    GKVIEA KL EVMIQRGNVPDLF YN LMDGFCLV 
Sbjct: 318 EMVDLGIQPNAVTFNVLMDILCKAGKVIEANKLLEVMIQRGNVPDLFIYNTLMDGFCLVS 377

Query: 241 DLKSAKKLFVSMTSKGCESNVISYGVLINGYCKNGTVEEAMDLYNEILQVGVRPDLITYN 300
           DL+SA++LF+SM SKGCE NVISY VLINGYCKN  VEEAM +YNE+LQVGV+P +ITYN
Sbjct: 378 DLESARELFLSMPSKGCEPNVISYNVLINGYCKNWKVEEAMKIYNEMLQVGVKPSVITYN 437

Query: 301 ALLTGLFLADKVDDAKKMFGVIQDLRMALSSCTVSIFLDGLCKSGCLFEAIELFNKLSYD 358
           ALLTGLF A KVDDAKK+FGVIQ   +  SS T+SIF+DGLCK+ CL EA+E+FN+LSY+
Sbjct: 438 ALLTGLFQAGKVDDAKKIFGVIQAHGLVPSSSTLSIFVDGLCKNDCLLEAMEIFNELSYN 497

[Close]

BLAST of Sed0014881 vs. ExPASy TrEMBL
Match: A0A6J1GP31 (putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111456184 PE=4 SV=1)

HSP 1 Score: 485.0 bits (1247), Expect = 2.8e-133
Identity = 260/502 (51.79%), Postives = 310/502 (61.75%), Query Frame = 0


Query: 1   MTSSGLFPDFFTLNILLNCLCNVNRVTEGLAAMAGILRRGYIPDV--------------- 60
           M+ +GL P++ TLNILLNCLCNVNR++EGLAAMAGI+RRG+IP++               
Sbjct: 138 MSLAGLLPNYITLNILLNCLCNVNRISEGLAAMAGIIRRGFIPNIVTYTSLIKGLCMEHR 197

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 198 ISEATRLFMRMQKLGCRPNVITYGTLIKGLCQTGNTNIALKLHEEMLNGTGRYGISCKPN 257

Query: 121 ---------------------------------------------------WEEAKLLFN 180
                                                              WEEAK LFN
Sbjct: 258 VISYSTIIDGLCKDGREDKARELFEEMKARRMLPDVISYSSLIHGFCNGGKWEEAKCLFN 317

Query: 181 EMVD-------------------HGKVIEAKKLWEVMIQRGNVPDLFSYNILMDGFCLVG 240
           EMVD                    GKVIEA +L EVMIQRGNVPDLF+YN LMDGFCLV 
Sbjct: 318 EMVDLGIQPNAVTFNVLMDILCKAGKVIEANELLEVMIQRGNVPDLFTYNTLMDGFCLVS 377

Query: 241 DLKSAKKLFVSMTSKGCESNVISYGVLINGYCKNGTVEEAMDLYNEILQVGVRPDLITYN 300
           DL SA++LF+SM SKGCE NVISY VLINGYCKN  VEEAM +YNE+LQVG++P +ITYN
Sbjct: 378 DLDSARELFLSMPSKGCEPNVISYNVLINGYCKNWKVEEAMKIYNEMLQVGIKPSMITYN 437

Query: 301 ALLTGLFLADKVDDAKKMFGVIQDLRMALSSCTVSIFLDGLCKSGCLFEAIELFNKLSYD 358
           ALLTGLF A KV+DAKK+FGVIQ   +  SS T+SIF+DGLCK+ CL EA+E+FN+LSY+
Sbjct: 438 ALLTGLFQAGKVNDAKKIFGVIQAHGLVPSSSTLSIFVDGLCKNDCLLEAMEIFNELSYN 497

[Close]

BLAST of Sed0014881 vs. ExPASy TrEMBL
Match: A0A6J1DSW3 (pentatricopeptide repeat-containing protein At1g63330-like OS=Momordica charantia OX=3673 GN=LOC111022854 PE=4 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 2.1e-125
Identity = 254/501 (50.70%), Postives = 301/501 (60.08%), Query Frame = 0


Query: 1   MTSSGLFPDFFTLNILLNCLCNVNRVTEGLAAMAGILRRGYIPDV--------------- 60
           M+ +G+ P++ TLNILLNCLCNVNRV+EGLAAMAGI+RRGYIP++               
Sbjct: 140 MSLAGILPNYITLNILLNCLCNVNRVSEGLAAMAGIIRRGYIPNIVTYTSLIKGLCMEHR 199

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 200 ISEATRLFMRMQKLGCTPNVITYGTLIKGLCQTGNTNIALKLHEEMLNGTGRYGITCKPN 259

Query: 121 ---------------------------------------------------WEEAKLLFN 180
                                                              WEEAK LFN
Sbjct: 260 VICYSTIIDGLCKDGLEDKARELFEEMKAQGMLPDVISYSSLIHGFCYGGKWEEAKSLFN 319

Query: 181 EMVDH-------------------GKVIEAKKLWEVMIQRG-NVPDLFSYNILMDGFCLV 240
           EMVDH                   GKVIEAK+L E+M+Q G N PDLF+YN LMDGFCLV
Sbjct: 320 EMVDHGVQPNVVTFNVLMDMLCKAGKVIEAKELLELMVQGGNNAPDLFTYNTLMDGFCLV 379

Query: 241 GDLKSAKKLFVSMTSKGCESNVISYGVLINGYCKNGTVEEAMDLYNEILQVGVRPDLITY 300
           GDL SA++LF++M +KGCE NVISY VLINGYCKN  +EEAM LYNE+LQVG+RP +ITY
Sbjct: 380 GDLNSARELFINMPNKGCEPNVISYNVLINGYCKNWKMEEAMKLYNEMLQVGIRPSVITY 439

Query: 301 NALLTGLFLADKVDDAKKMFGVIQDLRMALSSCTVSIFLDGLCKSGCLFEAIELFNKLS- 355
           N+LLTGLF A  V DAKK+FGVIQ   +A SS T S FLDGLCK+ CL EAIELFN L  
Sbjct: 440 NSLLTGLFQAGMVVDAKKLFGVIQANGLAPSSSTYSTFLDGLCKNDCLLEAIELFNGLKP 499

[Close]

BLAST of Sed0014881 vs. ExPASy TrEMBL
Match: A0A1S4DYL6 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103492586 PE=4 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 1.3e-114
Identity = 220/385 (57.14%), Postives = 273/385 (70.91%), Query Frame = 0


Query: 8   PDFFTLNILLNCLCNVNRVTEGLAAMAGILRRGYIPDV---------------WEEAKLL 67
           P+ F  NI+++ LC V R  E       +  +G IP+V               WEE+K L
Sbjct: 184 PNVFNYNIIIDGLCKVGREDEANELFEEMKAQGMIPNVISYSSLIHGFCCARKWEESKRL 243

Query: 68  FNEMVD-------------------HGKVIEAKKLWEVMIQRGNVPDLFSYNILMDGFCL 127
           F+EMVD                    GKVIEAKKL+EVMIQRG VPDLF Y+ LM+GFC+
Sbjct: 244 FDEMVDQGVQPDKVTFSVLIDTLCKEGKVIEAKKLFEVMIQRGIVPDLFIYSSLMEGFCM 303

Query: 128 VGDLKSAKKLFVSMTSKGCESNVISYGVLINGYCKNGTVEEAMDLYNEILQVGVRPDLIT 187
           VGDL SA++LFVSM SKGCE +VISY VLINGYCK   VEEAM LYNE+L VG RP++IT
Sbjct: 304 VGDLNSARELFVSMPSKGCEPDVISYTVLINGYCKTLKVEEAMKLYNEMLLVGKRPNVIT 363

Query: 188 YNALLTGLFLADKVDDAKKMFGVIQDLRMALSSCTVSIFLDGLCKSGCLFEAIELFNKL- 247
           Y ALLTGLFLA KV DAKK+F  ++   ++ +S    I LDGLCK+GCLFEA++LF +L 
Sbjct: 364 YGALLTGLFLAGKVGDAKKLFSAMKARGISANSHIYGIILDGLCKNGCLFEAMKLFTELK 423

Query: 248 SYDLKLNIDILNCVINGLCKVGKLEMAWELFNKLSHEGLLPDVVTYNTMIHGCCINGQIE 307
           SY+ KL+I+  +C+I+GLCK GKLE AWELF KLS EGL P+VVTY+ MIHG C  GQ++
Sbjct: 424 SYNFKLDIETYSCLIDGLCKEGKLETAWELFEKLSQEGLQPNVVTYSIMIHGLCREGQVD 483

Query: 308 KANDLFQKMEENGCIPDVITFNTLLSGFHLSNKREQVVGLLHKMAEKNVLPDEYSCNIVL 358
           KAN L QKME NGC P++IT+NTL+ GF+ SNK ++VV LLH M +K+VLPD  +C+IV+
Sbjct: 484 KANVLIQKMETNGCNPNIITYNTLMRGFYESNKLDEVVQLLHGMVKKDVLPDATTCSIVV 543

[Close]

BLAST of Sed0014881 vs. ExPASy TrEMBL
Match: A0A5D3C8J0 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00440 PE=4 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 1.3e-114
Identity = 220/385 (57.14%), Postives = 273/385 (70.91%), Query Frame = 0


Query: 8   PDFFTLNILLNCLCNVNRVTEGLAAMAGILRRGYIPDV---------------WEEAKLL 67
           P+ F  NI+++ LC V R  E       +  +G IP+V               WEE+K L
Sbjct: 184 PNVFNYNIIIDGLCKVGREDEANELFEEMKAQGMIPNVISYSSLIHGFCCARKWEESKRL 243

Query: 68  FNEMVD-------------------HGKVIEAKKLWEVMIQRGNVPDLFSYNILMDGFCL 127
           F+EMVD                    GKVIEAKKL+EVMIQRG VPDLF Y+ LM+GFC+
Sbjct: 244 FDEMVDQGVQPDKVTFSVLIDTLCKEGKVIEAKKLFEVMIQRGIVPDLFIYSSLMEGFCM 303

Query: 128 VGDLKSAKKLFVSMTSKGCESNVISYGVLINGYCKNGTVEEAMDLYNEILQVGVRPDLIT 187
           VGDL SA++LFVSM SKGCE +VISY VLINGYCK   VEEAM LYNE+L VG RP++IT
Sbjct: 304 VGDLNSARELFVSMPSKGCEPDVISYTVLINGYCKTLKVEEAMKLYNEMLLVGKRPNVIT 363

Query: 188 YNALLTGLFLADKVDDAKKMFGVIQDLRMALSSCTVSIFLDGLCKSGCLFEAIELFNKL- 247
           Y ALLTGLFLA KV DAKK+F  ++   ++ +S    I LDGLCK+GCLFEA++LF +L 
Sbjct: 364 YGALLTGLFLAGKVGDAKKLFSAMKARGISANSHIYGIILDGLCKNGCLFEAMKLFTELK 423

Query: 248 SYDLKLNIDILNCVINGLCKVGKLEMAWELFNKLSHEGLLPDVVTYNTMIHGCCINGQIE 307
           SY+ KL+I+  +C+I+GLCK GKLE AWELF KLS EGL P+VVTY+ MIHG C  GQ++
Sbjct: 424 SYNFKLDIETYSCLIDGLCKEGKLETAWELFEKLSQEGLQPNVVTYSIMIHGLCREGQVD 483

Query: 308 KANDLFQKMEENGCIPDVITFNTLLSGFHLSNKREQVVGLLHKMAEKNVLPDEYSCNIVL 358
           KAN L QKME NGC P++IT+NTL+ GF+ SNK ++VV LLH M +K+VLPD  +C+IV+
Sbjct: 484 KANVLIQKMETNGCNPNIITYNTLMRGFYESNKLDEVVQLLHGMVKKDVLPDATTCSIVV 543

[Close]

BLAST of Sed0014881 vs. TAIR 10
Match: AT3G22470.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 244.2 bits (622), Expect = 1.6e-64
Identity = 133/350 (38.00%), Postives = 202/350 (57.71%), Query Frame = 0


Query: 1   MTSSGLFPDFFTLNILLNCLCNVNRVTEGLAAMAGILRRGYIPDVWEEAKLLFNEMVDHG 60
           M   G+  D  T + L+  LCN  +  +G   +  ++ R  IPDV   + L+ +  V  G
Sbjct: 271 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALI-DVFVKEG 330

Query: 61  KVIEAKKLWEVMIQRGNVPDLFSYNILMDGFCLVGDLKSAKKLFVSMTSKGCESNVISYG 120
           K++EAK+L+  MI RG  PD  +YN L+DGFC    L  A ++F  M SKGCE ++++Y 
Sbjct: 331 KLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYS 390

Query: 121 VLINGYCKNGTVEEAMDLYNEILQVGVRPDLITYNALLTGLFLADKVDDAKKMFGVIQDL 180
           +LIN YCK   V++ M L+ EI   G+ P+ ITYN L+ G   + K++ AK++F  +   
Sbjct: 391 ILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSR 450

Query: 181 RMALSSCTVSIFLDGLCKSGCLFEAIELFNKLSYD-LKLNIDILNCVINGLCKVGKLEMA 240
            +  S  T  I LDGLC +G L +A+E+F K+    + L I I N +I+G+C   K++ A
Sbjct: 451 GVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDA 510

Query: 241 WELFNKLSHEGLLPDVVTYNTMIHGCCINGQIEKANDLFQKMEENGCIPDVITFNTLLSG 300
           W LF  LS +G+ PDVVTYN MI G C  G + +A+ LF+KM+E+GC PD  T+N L+  
Sbjct: 511 WSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRA 570

Query: 301 FHLSNKREQVVGLLHKMAEKNVLPDEYSCNIVLDMLS---IDEKYRECLN 347
               +     V L+ +M       D  +  +V+DMLS   +D+ + + L+
Sbjct: 571 HLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSDRRLDKSFLDMLS 619

[Close]

BLAST of Sed0014881 vs. TAIR 10
Match: AT1G63150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 236.5 bits (602), Expect = 3.3e-62
Identity = 132/353 (37.39%), Postives = 203/353 (57.51%), Query Frame = 0


Query: 1   MTSSGLFPDFFTLNILLNCLCNVNRVTEGLAAMAGILRRGYIPDVWEEAKLLFNEMVD-- 60
           M + G+ P+  T N L+NCLCN  R ++    ++ +L +   P+V     + FN ++D  
Sbjct: 284 METKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNV-----VTFNALIDAF 343

Query: 61  --HGKVIEAKKLWEVMIQRGNVPDLFSYNILMDGFCLVGDLKSAKKLFVSMTSKGCESNV 120
              GK++EA+KL E MIQR   PD  +YN+L++GFC+   L  AK++F  M SK C  N+
Sbjct: 344 FKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNI 403

Query: 121 ISYGVLINGYCKNGTVEEAMDLYNEILQVGVRPDLITYNALLTGLFLADKVDDAKKMFGV 180
            +Y  LING+CK   VE+ ++L+ E+ Q G+  + +TY  ++ G F A   D A+ +F  
Sbjct: 404 QTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQ 463

Query: 181 IQDLRMALSSCTVSIFLDGLCKSGCLFEAIELFNKL-SYDLKLNIDILNCVINGLCKVGK 240
           +   R+     T SI L GLC  G L  A+ +F  L   +++LNI I N +I G+CK GK
Sbjct: 464 MVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGK 523

Query: 241 LEMAWELFNKLSHEGLLPDVVTYNTMIHGCCINGQIEKANDLFQKMEENGCIPDVITFNT 300
           +  AW+LF  LS   + PDVVTYNTMI G C    +++A+DLF+KM+E+G +P+  T+NT
Sbjct: 524 VGEAWDLFCSLS---IKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNT 583

Query: 301 LLSGFHLSNKREQVVGLLHKMAEKNVLPDEYSCNIVLDMLSIDEKYRECLNLL 349
           L+        R     L+ +M     + D  + ++V +ML      +  LN+L
Sbjct: 584 LIRANLRDCDRAASAELIKEMRSSGFVGDASTISLVTNMLHDGRLDKSFLNML 628

[Close]

BLAST of Sed0014881 vs. TAIR 10
Match: AT1G62910.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 235.0 bits (598), Expect = 9.7e-62
Identity = 128/349 (36.68%), Postives = 205/349 (58.74%), Query Frame = 0


Query: 1   MTSSGLFPDFFTLNILLNCLCNVNRVTEGLAAMAGILRRGYIPDVWEEAKLLFNEMVDHG 60
           M + G+ PD FT + L++CLCN  R ++    ++ ++ R   P+V   + L+ +  V  G
Sbjct: 284 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI-DAFVKEG 343

Query: 61  KVIEAKKLWEVMIQRGNVPDLFSYNILMDGFCLVGDLKSAKKLFVSMTSKGCESNVISYG 120
           K++EA+KL++ MI+R   PD+F+Y+ L++GFC+   L  AK +F  M SK C  NV++Y 
Sbjct: 344 KLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYS 403

Query: 121 VLINGYCKNGTVEEAMDLYNEILQVGVRPDLITYNALLTGLFLADKVDDAKKMFGVIQDL 180
            LI G+CK   VEE M+L+ E+ Q G+  + +TY  L+ G F A   D+A+ +F  +  +
Sbjct: 404 TLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSV 463

Query: 181 RMALSSCTVSIFLDGLCKSGCLFEAIELFNKLSYD-LKLNIDILNCVINGLCKVGKLEMA 240
            +  +  T +I LDGLCK+G L +A+ +F  L    ++ +I   N +I G+CK GK+E  
Sbjct: 464 GVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDG 523

Query: 241 WELFNKLSHEGLLPDVVTYNTMIHGCCINGQIEKANDLFQKMEENGCIPDVITFNTLLSG 300
           WELF  LS +G+ P+V+ YNTMI G C  G  E+A+ L +KM+E+G +P+  T+NTL+  
Sbjct: 524 WELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRA 583

Query: 301 FHLSNKREQVVGLLHKMAEKNVLPDEYSCNIVLDMLSIDEKYRECLNLL 349
                 RE    L+ +M       D  +  +V +ML      +  L++L
Sbjct: 584 RLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLDKSFLDML 631

[Close]

BLAST of Sed0014881 vs. TAIR 10
Match: AT1G62930.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 231.1 bits (588), Expect = 1.4e-60
Identity = 128/350 (36.57%), Postives = 206/350 (58.86%), Query Frame = 0


Query: 1   MTSSGLFPDFFTLNILLNCLCNVNRVTEGLAAMAGILRRGYIPDVWEEAKLLFNEMVDHG 60
           M + G+ P+  T N L+ CLCN  R ++    ++ ++ R   P+V   + L+ +  V  G
Sbjct: 281 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI-DAFVKEG 340

Query: 61  KVIEAKKLWEVMIQRGNVPDLFSYNILMDGFCLVGDLKSAKKLFVSMTSKGCESNVISYG 120
           K++EA+KL++ MI+R   PD+F+Y+ L++GFC+   L  AK +F  M SK C  NV++Y 
Sbjct: 341 KLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYN 400

Query: 121 VLINGYCKNGTVEEAMDLYNEILQVGVRPDLITYNALLTGLFLADKVDDAKKMFGVIQDL 180
            LI G+CK   VEE M+L+ E+ Q G+  + +TYN L+ GLF A   D A+K+F  +   
Sbjct: 401 TLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSD 460

Query: 181 RMALSSCTVSIFLDGLCKSGCLFEAIELFNKLSYD-LKLNIDILNCVINGLCKVGKLEMA 240
            +     T SI LDGLCK G L +A+ +F  L    ++ +I   N +I G+CK GK+E  
Sbjct: 461 GVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDG 520

Query: 241 WELFNKLSHEGLLPDVVTYNTMIHGCCINGQIEKANDLFQKMEENGCIPDVITFNTLLSG 300
           W+LF  LS +G+ P+V+ Y TMI G C  G  E+A+ LF++M+E+G +P+  T+NTL+  
Sbjct: 521 WDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRA 580

Query: 301 FHLSNKREQVVGLLHKMAEKNVLPDEYSCNIVLDML---SIDEKYRECLN 347
                 +     L+ +M     + D  + ++V++ML    +++ Y E L+
Sbjct: 581 RLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKSYLEMLS 629

[Close]

BLAST of Sed0014881 vs. TAIR 10
Match: AT1G62670.1 (rna processing factor 2 )

HSP 1 Score: 224.9 bits (572), Expect = 1.0e-58
Identity = 123/349 (35.24%), Postives = 203/349 (58.17%), Query Frame = 0


Query: 1   MTSSGLFPDFFTLNILLNCLCNVNRVTEGLAAMAGILRRGYIPDVWEEAKLLFNEMVDHG 60
           M + G+ P+  T + L++CLCN  R ++    ++ ++ R   PDV+  + L+ +  V  G
Sbjct: 282 METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALI-DAFVKEG 341

Query: 61  KVIEAKKLWEVMIQRGNVPDLFSYNILMDGFCLVGDLKSAKKLFVSMTSKGCESNVISYG 120
           K++EA+KL++ M++R   P + +Y+ L++GFC+   L  AK++F  M SK C  +V++Y 
Sbjct: 342 KLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYN 401

Query: 121 VLINGYCKNGTVEEAMDLYNEILQVGVRPDLITYNALLTGLFLADKVDDAKKMFGVIQDL 180
            LI G+CK   VEE M+++ E+ Q G+  + +TYN L+ GLF A   D A+++F  +   
Sbjct: 402 TLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSD 461

Query: 181 RMALSSCTVSIFLDGLCKSGCLFEAIELFNKLSYD-LKLNIDILNCVINGLCKVGKLEMA 240
            +  +  T +  LDGLCK+G L +A+ +F  L    ++  I   N +I G+CK GK+E  
Sbjct: 462 GVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 521

Query: 241 WELFNKLSHEGLLPDVVTYNTMIHGCCINGQIEKANDLFQKMEENGCIPDVITFNTLLSG 300
           W+LF  LS +G+ PDVV YNTMI G C  G  E+A+ LF++M+E+G +P+   +NTL+  
Sbjct: 522 WDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRA 581

Query: 301 FHLSNKREQVVGLLHKMAEKNVLPDEYSCNIVLDMLSIDEKYRECLNLL 349
                 RE    L+ +M       D  +  +V +ML      +  L++L
Sbjct: 582 RLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLDKSFLDML 629

The following BLAST results are available for this feature:

BLAST of Sed0014881 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022992036.1	8.9e-134	52.19	pentatricopeptide repeat-containing protein At1g63330-like [Cucurbita maxima]	[more]
XP_022953742.1	5.8e-133	51.79	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [C...	[more]
KAG7014482.1	3.7e-132	51.59	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
KAG6575949.1	3.7e-132	51.59	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_023548637.1	1.1e-131	51.59	pentatricopeptide repeat-containing protein At1g63330-like [Cucurbita pepo subsp...	[more]

BLAST of Sed0014881 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQ83	2.2e-63	38.00	Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidop...	[more]
Q9CAM8	4.7e-61	37.39	Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana OX...	[more]
Q9LQ16	1.4e-60	36.68	Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana OX...	[more]
Q9LQ14	2.0e-59	36.57	Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidop...	[more]
Q9SXD1	1.4e-57	35.24	Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidop...	[more]

BLAST of Sed0014881 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JSG4	4.3e-134	52.19	pentatricopeptide repeat-containing protein At1g63330-like OS=Cucurbita maxima O...	[more]
A0A6J1GP31	2.8e-133	51.79	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS...	[more]
A0A6J1DSW3	2.1e-125	50.70	pentatricopeptide repeat-containing protein At1g63330-like OS=Momordica charanti...	[more]
A0A1S4DYL6	1.3e-114	57.14	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cuc...	[more]
A0A5D3C8J0	1.3e-114	57.14	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Sed0014881 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22470.1	1.6e-64	38.00	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G63150.1	3.3e-62	37.39	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G62910.1	9.7e-62	36.68	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62930.1	1.4e-60	36.57	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G62670.1	1.0e-58	35.24	rna processing factor 2	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 192..358 e-value: 8.9E-41 score: 142.2 coord: 45..191 e-value: 5.9E-37 score: 129.7
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 216..245 e-value: 1.2E-5 score: 24.9
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 59..76 e-value: 1.3 score: 9.5
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 256..290 e-value: 2.7E-13 score: 47.2 coord: 117..150 e-value: 2.7E-8 score: 31.5 coord: 11..45 e-value: 4.3E-4 score: 18.3 coord: 82..115 e-value: 5.7E-8 score: 30.5 coord: 223..255 e-value: 4.2E-8 score: 30.9 coord: 188..212 e-value: 0.0028 score: 15.7 coord: 152..176 e-value: 0.0024 score: 15.9
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 149..198 e-value: 6.7E-8 score: 32.6 coord: 253..300 e-value: 5.2E-19 score: 68.2 coord: 79..128 e-value: 3.3E-14 score: 52.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 80..114 score: 11.640958
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 115..149 score: 13.241308
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 9..43 score: 8.988323
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 289..323 score: 9.525427
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 219..253 score: 11.39981
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 254..288 score: 14.677238
None	No IPR available	PANTHER	PTHR47938	RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED	coord: 5..58
None	No IPR available	PANTHER	PTHR47938:SF12	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 5, MITOCHONDRIAL	coord: 58..339 coord: 5..58
None	No IPR available	PANTHER	PTHR47938	RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED	coord: 58..339
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 60..285

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014881.1	Sed0014881.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding