Sed0014034 (gene) Chayote v1

Overview
NameSed0014034
Typegene
OrganismSechium edule (Chayote v1)
Descriptionarabinogalactan peptide 23-like
LocationLG09: 37849967 .. 37850158 (+)
RNA-Seq ExpressionSed0014034
SyntenySed0014034
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATCAAGAACTTTTCCTGTGCTGCCCTCTTCGCTGCCGCTACCGTTACGGTAGTCGTGGCCTCCGAGGAGTCTCTCTCCCCGGCCGCTGCCCCTGGCCCGAGCAGCGCTGCCTCCGCTGCTCTTCCCGCTCTTGGATCGCTCGTCGGGGCCTCGCTTGTTTCCTTCGTTGCCTACCTCTTGAACTGA

mRNA sequence

ATGGAAATCAAGAACTTTTCCTGTGCTGCCCTCTTCGCTGCCGCTACCGTTACGGTAGTCGTGGCCTCCGAGGAGTCTCTCTCCCCGGCCGCTGCCCCTGGCCCGAGCAGCGCTGCCTCCGCTGCTCTTCCCGCTCTTGGATCGCTCGTCGGGGCCTCGCTTGTTTCCTTCGTTGCCTACCTCTTGAACTGA

Coding sequence (CDS)

ATGGAAATCAAGAACTTTTCCTGTGCTGCCCTCTTCGCTGCCGCTACCGTTACGGTAGTCGTGGCCTCCGAGGAGTCTCTCTCCCCGGCCGCTGCCCCTGGCCCGAGCAGCGCTGCCTCCGCTGCTCTTCCCGCTCTTGGATCGCTCGTCGGGGCCTCGCTTGTTTCCTTCGTTGCCTACCTCTTGAACTGA

Protein sequence

MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYLLN
Homology
BLAST of Sed0014034 vs. NCBI nr
Match: XP_023528634.1 (arabinogalactan peptide 23 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.1 bits (235), Expect = 2.3e-16
Identity = 55/63 (87.30%), Postives = 60/63 (95.24%), Query Frame = 0

Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          ME+KN +CAALFAAA VT VVAS+ESLSPAAAPGPSSAASAALPALGSL+GASLVSFVAY
Sbjct: 1  MEMKNIACAALFAAAAVTAVVASDESLSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60

Query: 61 LLN 64
          +LN
Sbjct: 61 VLN 63

BLAST of Sed0014034 vs. NCBI nr
Match: XP_023004714.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-15
Identity = 55/63 (87.30%), Postives = 58/63 (92.06%), Query Frame = 0

Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          ME+K  +CAALFAAATVT VVAS+ESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

Query: 61 LLN 64
            N
Sbjct: 61 YFN 63

BLAST of Sed0014034 vs. NCBI nr
Match: KAG7025661.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.3 bits (225), Expect = 3.3e-15
Identity = 54/63 (85.71%), Postives = 58/63 (92.06%), Query Frame = 0

Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          ME+K  +CAALFAAATVT VVAS+ESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA+
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 LLN 64
            N
Sbjct: 61 YFN 63

BLAST of Sed0014034 vs. NCBI nr
Match: KAG7018419.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.9 bits (224), Expect = 4.3e-15
Identity = 53/63 (84.13%), Postives = 58/63 (92.06%), Query Frame = 0

Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          ME+KN +CA LFAAA VT VVAS+ES SPAAAPGPSSAASAALPALGSL+GASLVSFVAY
Sbjct: 1  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60

Query: 61 LLN 64
          +LN
Sbjct: 61 VLN 63

BLAST of Sed0014034 vs. NCBI nr
Match: XP_022960230.1 (arabinogalactan peptide 23-like [Cucurbita moschata])

HSP 1 Score: 90.1 bits (222), Expect = 7.3e-15
Identity = 53/63 (84.13%), Postives = 58/63 (92.06%), Query Frame = 0

Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          ME+K  +CAALFAAAT+T VVAS+ESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA+
Sbjct: 1  MEMKKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 LLN 64
            N
Sbjct: 61 YFN 63

BLAST of Sed0014034 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 2.5e-10
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 0

Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          ME+K  +C  LFAAA++T V+A+EE  +P  APGP+SAASAALPALGSLVGASLVS  +Y
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLFSY 60

Query: 61 LLN 64
           L+
Sbjct: 61 YLH 61

BLAST of Sed0014034 vs. ExPASy TrEMBL
Match: A0A6J1KX42 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.4e-16
Identity = 55/63 (87.30%), Postives = 58/63 (92.06%), Query Frame = 0

Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          ME+K  +CAALFAAATVT VVAS+ESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

Query: 61 LLN 64
            N
Sbjct: 61 YFN 63

BLAST of Sed0014034 vs. ExPASy TrEMBL
Match: A0A6J1H8I1 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.5e-15
Identity = 53/63 (84.13%), Postives = 58/63 (92.06%), Query Frame = 0

Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          ME+K  +CAALFAAAT+T VVAS+ESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA+
Sbjct: 1  MEMKKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 LLN 64
            N
Sbjct: 61 YFN 63

BLAST of Sed0014034 vs. ExPASy TrEMBL
Match: A0A6J1IYE9 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.0e-15
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 0

Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          ME+KN +C ALF AA VT VVAS+ES SPAAAPGPSSAASAALPALGSL+GASLVSFVAY
Sbjct: 1  MEMKNIACTALFTAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60

Query: 61 LLN 64
          +LN
Sbjct: 61 VLN 63

BLAST of Sed0014034 vs. ExPASy TrEMBL
Match: A0A6J1F3F5 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.8e-15
Identity = 53/63 (84.13%), Postives = 56/63 (88.89%), Query Frame = 0

Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          ME+K  +CAALFAAATVT VVAS+ESLSPAAAPGPSSAASA LPALGSLVGASLVS VAY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSLVAY 60

Query: 61 LLN 64
            N
Sbjct: 61 YFN 63

BLAST of Sed0014034 vs. ExPASy TrEMBL
Match: A0A0A0L9U8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697910 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 0

Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          ME+K  +CA LFAAATVT VVA++E+L+P  APGPSS A   +PA+GSLVGASL+SF AY
Sbjct: 1  MEMKKIACAVLFAAATVTAVVAADEALAP--APGPSSGAGIGVPAIGSLVGASLLSFAAY 60

Query: 61 LL 63
           L
Sbjct: 61 YL 60

BLAST of Sed0014034 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-11
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 0

Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          ME+K  +C  LFAAA++T V+A+EE  +P  APGP+SAASAALPALGSLVGASLVS  +Y
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLFSY 60

Query: 61 LLN 64
           L+
Sbjct: 61 YLH 61

BLAST of Sed0014034 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-08
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 0

Query: 1  MEIKNFSCAALFAAATVTVVVASEESLSPAAAPGP-SSAASAALPALGSLVGASLVSFVA 60
          ME+K  +C  +FAAA++T V+A+E     A APGP +S AS A+PALGSLVGASLVS  A
Sbjct: 1  MEMKKIACGVVFAAASMTAVMAAEVG---APAPGPAASGASVAVPALGSLVGASLVSLFA 60

Query: 61 YLLN 64
          Y LN
Sbjct: 61 YYLN 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023528634.12.3e-1687.30arabinogalactan peptide 23 [Cucurbita pepo subsp. pepo][more]
XP_023004714.11.1e-1587.30arabinogalactan peptide 23-like [Cucurbita maxima][more]
KAG7025661.13.3e-1585.71Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG7018419.14.3e-1584.13Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022960230.17.3e-1584.13arabinogalactan peptide 23-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Q8S2W42.5e-1065.08Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A6J1KX425.4e-1687.30arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4... [more]
A0A6J1H8I13.5e-1584.13arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE... [more]
A0A6J1IYE96.0e-1582.54arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4... [more]
A0A6J1F3F57.8e-1584.13arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE... [more]
A0A0A0L9U81.1e-0866.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697910 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G57690.11.8e-1165.08arabinogalactan protein 23 [more]
AT2G41905.11.8e-0859.38BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044702Arabinogalactan protein 23/40PANTHERPTHR34672POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0014034.1Sed0014034.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0031225 anchored component of membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane