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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGATATGCTGATTTCTCATCTTAAGGCTGCGAAAACAGATCCTATTGCTGTGGCTACTGTTGTTTCACATGTAACAGGTATTTGCTCTATGGCCTCTTCTGTTAATTCCCTTGCTAATCGATGGATTATCGACTCTGGGGCATCTCACCACATCTGTCATAATAAGTCTGCTTTCTGTAATTGGCATCACATTGATCCCATGTCTGTTATATTGCCTACCACTTACAAAGTTCTTGTTGAATATGTTGGTAATGTTATCATTTCTGATTCATTGGTTCTTCATGTTGTCTTGTTCATCCCGGATTTTGGTTACAACTTGGTATCTGTCAGCGGCCTACTACAAGCCTCAGATATTTCTGTTTTGTTTTCTAATACTGAATGCATCATACAGGACAAACGTCTATTAACAATGATTGGCAAGGCTGATTGTCATCATGGTCTTAACCTGCTTTCTGAGTCCTCGGCACCTAAGGTTTCTAGTCCTGTATGTTCAGTTTCTTCTGCTGTTTGGCACAGTCGTTTAGGGCATTTATCACCTAAACGTTTAAACTTGTTGAAAGATGCTTAA mRNA sequence ATGGATATGCTGATTTCTCATCTTAAGGCTGCGAAAACAGATCCTATTGCTGTGGCTACTGTTGTTTCACATGTAACAGGTATTTGCTCTATGGCCTCTTCTGTTAATTCCCTTGCTAATCGATGGATTATCGACTCTGGGGCATCTCACCACATCTGTCATAATAAGTCTGCTTTCTGTAATTGGCATCACATTGATCCCATGTCTGTTATATTGCCTACCACTTACAAAGTTCTTGTTGAATATGTTGGTAATGTTATCATTTCTGATTCATTGGTTCTTCATGTTGTCTTGTTCATCCCGGATTTTGGTTACAACTTGGTATCTGTCAGCGGCCTACTACAAGCCTCAGATATTTCTGTTTTGTTTTCTAATACTGAATGCATCATACAGGACAAACGTCTATTAACAATGATTGGCAAGGCTGATTGTCATCATGGTCTTAACCTGCTTTCTGAGTCCTCGGCACCTAAGGTTTCTAGTCCTGTATGTTCAGTTTCTTCTGCTGTTTGGCACAGTCGTTTAGGGCATTTATCACCTAAACGTTTAAACTTGTTGAAAGATGCTTAA Coding sequence (CDS) ATGGATATGCTGATTTCTCATCTTAAGGCTGCGAAAACAGATCCTATTGCTGTGGCTACTGTTGTTTCACATGTAACAGGTATTTGCTCTATGGCCTCTTCTGTTAATTCCCTTGCTAATCGATGGATTATCGACTCTGGGGCATCTCACCACATCTGTCATAATAAGTCTGCTTTCTGTAATTGGCATCACATTGATCCCATGTCTGTTATATTGCCTACCACTTACAAAGTTCTTGTTGAATATGTTGGTAATGTTATCATTTCTGATTCATTGGTTCTTCATGTTGTCTTGTTCATCCCGGATTTTGGTTACAACTTGGTATCTGTCAGCGGCCTACTACAAGCCTCAGATATTTCTGTTTTGTTTTCTAATACTGAATGCATCATACAGGACAAACGTCTATTAACAATGATTGGCAAGGCTGATTGTCATCATGGTCTTAACCTGCTTTCTGAGTCCTCGGCACCTAAGGTTTCTAGTCCTGTATGTTCAGTTTCTTCTGCTGTTTGGCACAGTCGTTTAGGGCATTTATCACCTAAACGTTTAAACTTGTTGAAAGATGCTTAA Protein sequence MDMLISHLKAAKTDPIAVATVVSHVTGICSMASSVNSLANRWIIDSGASHHICHNKSAFCNWHHIDPMSVILPTTYKVLVEYVGNVIISDSLVLHVVLFIPDFGYNLVSVSGLLQASDISVLFSNTECIIQDKRLLTMIGKADCHHGLNLLSESSAPKVSSPVCSVSSAVWHSRLGHLSPKRLNLLKDA
Homology
BLAST of Lag0005636 vs. NCBI nr
Match: KAA0065480.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] >TYK08721.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa]) HSP 1 Score: 161.0 bits (406), Expect = 1.0e-35 Identity = 87/189 (46.03%), Postives = 122/189 (64.55%), Query Frame = 0 Query: 1 MDMLISHLKAAKTDPIAVATVVSHVTGICSMASSVNSLANRWIIDSGASHHICHNKSAFC 60 M +L +HL+AA T PI AT ++H +GI ++ S N + WIIDSGAS HICH+KS F Sbjct: 339 MTLLNNHLQAATTAPITTATAITHTSGIFALTSHNNQSHDEWIIDSGASRHICHDKSLFK 398
Query: 61 NWHHIDPMSVILPTTYKVLVEYVGNVIISDSLVLHVVLFIPDFGYNLVSVSGLLQASDIS 120 NW H + M V+LP +++ V+ +G++ I+ SL L VLF+ F YNL+SVS LL +IS Sbjct: 399 NWSHTNNMFVMLPNGHRISVDLIGDIQINGSLTLKDVLFVSQFAYNLISVSCLLITKNIS 458
Query: 121 VLFSNTECIIQDKRLLTMIGKADCHHGLNLLSE---SSAPKVSSPVCSVSSAVWHSRLGH 180 + F +T CIIQD MIGKA C +GL +L++ ++ + ++S WH RLGH Sbjct: 459 LDFQSTCCIIQDLSRPMMIGKASCQNGLYVLNKEANTNCIAAGVKINAISVDTWHQRLGH 518
Query: 181 LSPKRLNLL 187 LSPK L+ L Sbjct: 519 LSPKCLSSL 527
BLAST of Lag0005636 vs. NCBI nr
Match: XP_012857659.1 (PREDICTED: uncharacterized protein LOC105976934 [Erythranthe guttata]) HSP 1 Score: 128.3 bits (321), Expect = 7.2e-26 Identity = 75/178 (42.13%), Postives = 104/178 (58.43%), Query Frame = 0 Query: 12 KTDPIAVATVVSHVTGIC--SMASSVNSLANRWIIDSGASHHICHNKSAFCNWHHIDPMS 71 K I + +S VTGIC + + + + + WI+DSGAS HICHNKS F N + Sbjct: 373 KNSEIFDTSHISRVTGICLFNALHTPSFMPHHWILDSGASRHICHNKSLFLNMKSVSNAR 432
Query: 72 VILPTTYKVLVEYVGNVIISDSLVLHVVLFIPDFGYNLVSVSGLLQASDISVLFSNTECI 131 V+LP + VLV +G+V ++ LVLH V ++P+F +NLVSVS LL S V+F Sbjct: 433 VVLPDSSMVLVNCIGDVQLTTHLVLHNVFYVPEFKFNLVSVSALLHGSSYVVIFDEFSFS 492
Query: 132 IQDKRLLTMIGKADCHHGLNLLSESSAPKVSSPVCS-VSSAVWHSRLGHLSPKRLNLL 187 IQD RL+T IGK + GL +L SA + C+ +S+ VWH RLGH+ +L L Sbjct: 493 IQD-RLMTQIGKGNKVQGLYVLDPVSASPIEHAFCNKISATVWHHRLGHIPQPKLAFL 549
BLAST of Lag0005636 vs. NCBI nr
Match: XP_019420691.1 (PREDICTED: uncharacterized protein LOC109330875 [Lupinus angustifolius]) HSP 1 Score: 120.2 bits (300), Expect = 2.0e-23 Identity = 65/174 (37.36%), Postives = 101/174 (58.05%), Query Frame = 0 Query: 24 HVTGICSMASSVNSLANR-----WIIDSGASHHICHNKSAFCNWHHIDPMSVILPTTYKV 83 H S+NSL+++ WI+DSGA+ H+CH+ S + N+ I P+ + LP +V Sbjct: 287 HALDSTDSGKSLNSLSHKIIFDGWILDSGATDHVCHSMSLYLNFKRIKPLLIALPNGNQV 346
Query: 84 LVEYVGNVIISDSLVLHVVLFIPDFGYNLVSVSGLLQASDISVLFSNTECIIQDKRLLTM 143 + G ++ S+ L L VL++P F +NLVS+S L + ++ FSN C IQD + L M Sbjct: 347 TTHHSGTIVFSNDLYLTNVLYVPTFNFNLVSISKLTTSLACTLTFSNNHCQIQDTQSLKM 406
Query: 144 IGKADCHHGLNLLSESSAPKVSSPVCSV-----SSAVWHSRLGHLSPKRLNLLK 188 IG A+ GL +LS+SS S ++ S +WHSRLGHLS K++ +++ Sbjct: 407 IGAAELRGGLYMLSQSSKKYCESTHVNLYTSYDDSNIWHSRLGHLSHKKMTIMQ 460
BLAST of Lag0005636 vs. NCBI nr
Match: KZV37633.1 (hypothetical protein F511_38248 [Dorcoceras hygrometricum]) HSP 1 Score: 115.2 bits (287), Expect = 6.3e-22 Identity = 69/181 (38.12%), Postives = 106/181 (58.56%), Query Frame = 0 Query: 14 DPIAVATVVSHVTGICSMASSVNSLANR-WIIDSGASHHICHNKSAFCNWHHIDPMS--V 73 +P +S +TGICS S +S+ W++D+GA+HHIC + S F H + P+S + Sbjct: 296 EPQQQEPTISCLTGICSTVSHTSSITQTDWVLDTGATHHICCSLSMF---HSVRPVSSKI 355
Query: 74 ILPTTYKVLVEYVGNVIISDSLVLHVVLFIPDFGYNLVSVSGLLQASDISVLFSNTECII 133 +LP T + V +G+V ++ L+LH VL++P+F +NL+S+S L + SV F+ C I Sbjct: 356 MLPNTLTIQVSVIGSVFLTSDLILHDVLYVPEFQFNLLSISALTNNRECSVSFTANSCQI 415
Query: 134 QDKRLLTMIGKADCHHGLNLLSESSAPKVSSPVCSVS---SAVWHSRLGHLSPKRLNLLK 189 QD + MIG L +L +S +S VC+ S S +WH R+GH SP +L+ LK Sbjct: 416 QDIKRTKMIGTGKRLGNLYVLMKS-----TSYVCNASVPKSELWHLRMGHPSPSKLSSLK 468
BLAST of Lag0005636 vs. NCBI nr
Match: KZV36180.1 (hypothetical protein F511_26362, partial [Dorcoceras hygrometricum]) HSP 1 Score: 114.0 bits (284), Expect = 1.4e-21 Identity = 70/186 (37.63%), Postives = 108/186 (58.06%), Query Frame = 0 Query: 7 HLKAAKTDPIAVATVVSHVTGICSMASSVNSLANR-WIIDSGASHHICHNKSAFCNWHHI 66 H + +P + +S +TGICS S + +A W++D+GA+HHIC + S F + + Sbjct: 147 HSPNLQAEPQQQESTISCITGICSTVSHIPLIAQTDWVLDTGATHHICCSLSLFHSSRTV 206
Query: 67 DPMSVILPTTYKVLVEYVGNVIISDSLVLHVVLFIPDFGYNLVSVSGLLQASDISVLFSN 126 + + LP T+ + V VG+VI+++ L+LH VL++P F +NL+SVS L SV F+ Sbjct: 207 N-SKITLPNTFTIQVTIVGSVILTNDLILHDVLYVPVFKFNLLSVSSLTNILAYSVSFTA 266
Query: 127 TECIIQDKRLLTMIGKADCHHGLNLLSESSAPKVSSPVCSVSSA---VWHSRLGHLSPKR 186 C IQD + MIG L +L +S +S +C+VS + +WH R+GH SP R Sbjct: 267 DSCQIQDIKRTRMIGTGKRLGNLYVLEKS-----TSYICNVSVSKPELWHLRMGHPSPSR 326
Query: 187 LNLLKD 189 L+ LKD Sbjct: 327 LSRLKD 326
BLAST of Lag0005636 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.6e-07 Identity = 46/156 (29.49%), Postives = 76/156 (48.72%), Query Frame = 0 Query: 39 ANRWIIDSGASHHICHNKSAFCNWHHIDPMS----VILPTTYKVLVEYVGNVIISDS--- 98 +N W++DSGA+HHI S F N P + V++ + + + G+ +S Sbjct: 328 SNNWLLDSGATHHI---TSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRP 387
Query: 99 LVLHVVLFIPDFGYNLVSVSGLLQASDISVLFSNTECIIQDKR--LLTMIGKA-DCHHGL 158 L LH +L++P+ NL+SV L A+ +SV F ++D + + GK D + Sbjct: 388 LNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEW 447
Query: 159 NLLSESSAPKVSSPVCSVSSAVWHSRLGHLSPKRLN 185 + S +SP + + WH+RLGH +P LN Sbjct: 448 PIASSQPVSLFASPSSKATHSSWHARLGHPAPSILN 480
BLAST of Lag0005636 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 3.5e-07 Identity = 48/156 (30.77%), Postives = 76/156 (48.72%), Query Frame = 0 Query: 39 ANRWIIDSGASHHICHNKSAFCNWHHIDPMS----VILPTTYKVLVEYVGNVII---SDS 98 AN W++DSGA+HHI S F N P + V++ + + + G+ + S S Sbjct: 307 ANNWLLDSGATHHI---TSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRS 366
Query: 99 LVLHVVLFIPDFGYNLVSVSGLLQASDISVLFSNTECIIQDKR--LLTMIGKA-DCHHGL 158 L L+ VL++P+ NL+SV L + +SV F ++D + + GK D + Sbjct: 367 LDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEW 426
Query: 159 NLLSESSAPKVSSPVCSVSSAVWHSRLGHLSPKRLN 185 + S + +SP + + WHSRLGH S LN Sbjct: 427 PIASSQAVSMFASPCSKATHSSWHSRLGHPSLAILN 459
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0065480.1 | 1.0e-35 | 46.03 | Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] >T... | [more] |
XP_012857659.1 | 7.2e-26 | 42.13 | PREDICTED: uncharacterized protein LOC105976934 [Erythranthe guttata] | [more] |
XP_019420691.1 | 2.0e-23 | 37.36 | PREDICTED: uncharacterized protein LOC109330875 [Lupinus angustifolius] | [more] |
KZV37633.1 | 6.3e-22 | 38.12 | hypothetical protein F511_38248 [Dorcoceras hygrometricum] | [more] |
KZV36180.1 | 1.4e-21 | 37.63 | hypothetical protein F511_26362, partial [Dorcoceras hygrometricum] | [more] |
Match Name | E-value | Identity | Description | |
Q94HW2 | 1.6e-07 | 29.49 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... | [more] |
Q9ZT94 | 3.5e-07 | 30.77 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... | [more] |
Relationships
The following mRNA feature(s) are a part of this gene:
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