Homology
BLAST of Sed0006598 vs. NCBI nr
Match:
XP_022150277.1 (DNA repair helicase XPD [Momordica charantia])
HSP 1 Score: 1471.1 bits (3807), Expect = 0.0e+00
Identity = 730/758 (96.31%), Postives = 746/758 (98.42%), Query Frame = 0
Query: 1 MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
MKF+LEDVTV FPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY
Sbjct: 1 MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYT 60
Query: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQV LG RAQILAVGLSSRKNLCVN +
Sbjct: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVHQLGPRAQILAVGLSSRKNLCVNPR 120
Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
VLASENRDSVDAGCRKLTASWVRA+AAEN NV +CEFFEQYEKAGS AVLPPGVYTLQDL
Sbjct: 121 VLASENRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSTAVLPPGVYTLQDL 180
Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
NVCIEALSVSVRRQTIEGARRNLNKMRQ+IERFKETDAGRLRAEYNRLVEGLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
+DTWLSNPALPDDILKEAVPGNIRRAEHF+HVLRRLVQYLE RLDTENV KEGLVNFVG+
Sbjct: 301 TDTWLSNPALPDDILKEAVPGNIRRAEHFVHVLRRLVQYLEGRLDTENVEKEGLVNFVGS 360
Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
+GSQAGIDQKTLKFCYDRLHSL++TLEITDTDEFLHIQTICDFATL+GTYARGFSIIIEP
Sbjct: 361 VGSQAGIDQKTLKFCYDRLHSLLLTLEITDTDEFLHIQTICDFATLIGTYARGFSIIIEP 420
Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDG+VCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SYSYMDGI+NSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIINSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
LRKMAQPYDKAGSSG+KTLLSQEDLEKMSE NMN+MLY
Sbjct: 721 LRKMAQPYDKAGSSGRKTLLSQEDLEKMSEGNMNEMLY 758
BLAST of Sed0006598 vs. NCBI nr
Match:
XP_038898338.1 (general transcription and DNA repair factor IIH helicase subunit XPD isoform X1 [Benincasa hispida])
HSP 1 Score: 1471.1 bits (3807), Expect = 0.0e+00
Identity = 734/758 (96.83%), Postives = 748/758 (98.68%), Query Frame = 0
Query: 1 MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
MKF+LEDVTV FPYD IYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA
Sbjct: 1 MKFQLEDVTVYFPYDQIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
Query: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQV+ LG RAQILAVGLSSRKNLCVN K
Sbjct: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120
Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
VLASE+RDSVDAGCRKLTASWVRA+AAEN NV +CEFFEQYEKAGS+AVLPPGVYTLQDL
Sbjct: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
NVCIEALSVSVRRQTIEGARRNLNKMRQ+I+RFKETDAGRLRAEYNRLVEGLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIDRFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLE RLDTENV KEGLV FVG+
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKEGLVTFVGS 360
Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
IGSQAGIDQKTLKFCYDRLHSLM+TLEITDTDEFLHIQTICDFATL+GTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHIQTICDFATLIGTYARGFSIIIEP 420
Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDG+VCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
LRKMAQPYDKAGSSGKKTLLSQEDLEKMSE+NMN+MLY
Sbjct: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSEANMNEMLY 758
BLAST of Sed0006598 vs. NCBI nr
Match:
XP_008451374.1 (PREDICTED: DNA repair helicase XPD isoform X2 [Cucumis melo])
HSP 1 Score: 1470.3 bits (3805), Expect = 0.0e+00
Identity = 732/758 (96.57%), Postives = 748/758 (98.68%), Query Frame = 0
Query: 1 MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
MKF+LEDVTV FPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA
Sbjct: 1 MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
Query: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQV+ LG RAQILAVGLSSRKNLCVN K
Sbjct: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120
Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
VLASE+RDSVDAGCRKLTASWVRA+AAEN NV +CEFFEQYEKAGS+AVLPPGVYTLQDL
Sbjct: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
NVCIEALSVSVRRQTIEGARRNLNKMRQ+IERFKETDAGRLRAEYNRLVEGLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLE RLDT+NV KEGLV FVG+
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360
Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
IGSQAGIDQKTLKFCYDRLHSLM+TLEITDTDEFLH+QTICDFATLVGTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420
Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVS VPDG+VCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSTVPDGIVCFFV 540
Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
LRKMAQPYDKAGS+G+KTLLSQEDLEKMSE+NMN+MLY
Sbjct: 721 LRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY 758
BLAST of Sed0006598 vs. NCBI nr
Match:
XP_011659313.1 (general transcription and DNA repair factor IIH helicase subunit XPD [Cucumis sativus] >KGN44823.1 hypothetical protein Csa_016833 [Cucumis sativus])
HSP 1 Score: 1469.9 bits (3804), Expect = 0.0e+00
Identity = 732/758 (96.57%), Postives = 748/758 (98.68%), Query Frame = 0
Query: 1 MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
MKF+LEDVTV FPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA
Sbjct: 1 MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
Query: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQV+ LG RAQILAVGLSSRKNLCVN
Sbjct: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPN 120
Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
VLASE+RDSVDAGCRKLTASWVRA+AAEN +V +CEFFEQYEKAGS+AVLPPGVYTLQDL
Sbjct: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPDVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
NVCIEALSVSVRRQTIEGARRNLNKMRQ+IERFKETDAGRLRAEYNRLVEGLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLE RLDTENV KEGLV FVG+
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKEGLVTFVGS 360
Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
IGSQAGIDQKTLKFCYDRLHSLM+TLEITDTDEFLH+QTICDFATLVGTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420
Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDG+VCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SYSYMDGI+NSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIINSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
LRKMAQPYDKAGSSG+KTLLSQEDLEKMSE+NMN+MLY
Sbjct: 721 LRKMAQPYDKAGSSGRKTLLSQEDLEKMSEANMNEMLY 758
BLAST of Sed0006598 vs. NCBI nr
Match:
XP_022953477.1 (DNA repair helicase XPD [Cucurbita moschata])
HSP 1 Score: 1465.7 bits (3793), Expect = 0.0e+00
Identity = 731/758 (96.44%), Postives = 746/758 (98.42%), Query Frame = 0
Query: 1 MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
MKF+LEDVTV FPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY
Sbjct: 1 MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
Query: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQV+ +G RAQILAVGLSSRKNLCVN
Sbjct: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQVGPRAQILAVGLSSRKNLCVNPA 120
Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
VLASENRDSVDAGCRKLTASWVRA+AAEN NV +CEFFEQYEKAGS+AVLPPGVYTLQDL
Sbjct: 121 VLASENRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
NVCIEALSVSVRRQTIEGARRNLNKMRQ+IERFKETDAGRLRAEYNRLV+GLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVDGLAQRGNLPI 300
Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLE RLDTENV KEGLV FV +
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKEGLVTFVSS 360
Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
IGSQAGIDQKTLKFCYDRL+SLM+TLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLYSLMLTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDG+VCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
LRKMAQPYDKAGSSG+KTLLSQEDLEKMSE+NMN+MLY
Sbjct: 721 LRKMAQPYDKAGSSGRKTLLSQEDLEKMSEANMNEMLY 758
BLAST of Sed0006598 vs. ExPASy Swiss-Prot
Match:
Q8W4M7 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Arabidopsis thaliana OX=3702 GN=XPD PE=1 SV=1)
HSP 1 Score: 1330.9 bits (3443), Expect = 0.0e+00
Identity = 651/758 (85.88%), Postives = 707/758 (93.27%), Query Frame = 0
Query: 1 MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
M F++EDVTV FPYD+IYPEQY YM+ELKRALDAKGHCLLEMPTGTGKTIALLSLITSY
Sbjct: 1 MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR 60
Query: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
LS+P +P+KL+YCTRTVHEMEKTL EL+LLHDYQVR LG++A+ILA+GLSSRKNLCVN+K
Sbjct: 61 LSRPDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNTK 120
Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
VLA+ENRDSVDA CRK TASWVRAL+ EN NV C+FFE YEKA NA+LPPGVYTL+DL
Sbjct: 121 VLAAENRDSVDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVYTLEDL 180
Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
RAFG +GWCPYFLARHM+QFANV+VYSYQYLLDPKVA ISKE+Q+ESVVVFDEAHNID
Sbjct: 181 RAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
NVCIEALSVSVRR T+EGA RNLNK+RQ+I+RFK TDAGRLRAEYNRLVEGLA RG+L
Sbjct: 241 NVCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVEGLALRGDLSG 300
Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
D WL+NPALP DILKEAVPGNIRRAEHF+HVLRRL+QYL RLDTENV KE V+FV +
Sbjct: 301 GDQWLANPALPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTENVEKESPVSFVSS 360
Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
+ SQAGI+QKTLKFCYDRL SLM+TLEITDTDEFL IQT+CDFATLVGTYARGFSIIIEP
Sbjct: 361 LNSQAGIEQKTLKFCYDRLQSLMLTLEITDTDEFLPIQTVCDFATLVGTYARGFSIIIEP 420
Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
DERMPHIPDP+LQLSCHDASLAIKPVF+RFQSVVITSGTLSPIDLYPRLLNF PVVSRS
Sbjct: 421 YDERMPHIPDPILQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFTPVVSRS 480
Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
F MS+TRDCICPMVLTRGSDQLPVSTKFDMRSD GVVRNYG+LL+EMVS VPDGVVCFFV
Sbjct: 481 FKMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCFFV 540
Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SYSYMDGI+ +WNETGILKEIMQ KLVFIETQDVVETTLALDNYR+ACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIIATWNETGILKEIMQQKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
RGKVAEGIDFDRHYGRLV+M+GVPFQYTLSKIL ARLEYL +TFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVVMYGVPFQYTLSKILRARLEYLHDTFQIKEGDFLTFDALRQA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMA+HIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAIHIAREF 720
Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
LRKMAQPYDKAG+ G+KTLL+QEDLEKM+E+ + DM Y
Sbjct: 721 LRKMAQPYDKAGTMGRKTLLTQEDLEKMAETGVQDMAY 758
BLAST of Sed0006598 vs. ExPASy Swiss-Prot
Match:
A6QLJ0 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Bos taurus OX=9913 GN=ERCC2 PE=2 SV=1)
HSP 1 Score: 866.3 bits (2237), Expect = 2.6e-250
Identity = 419/746 (56.17%), Postives = 558/746 (74.80%), Query Frame = 0
Query: 1 MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
MK ++ + V FPYD+IYPEQ++YMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
+ P KLIYC+RTV E+EK + ELR L + + G + L + LSSRKNLC++ +
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
V VD C LTAS+VRA +S++ C F+E+++ G LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQRDSSLPHCRFYEEFDVHGRQVPLPTGIYNLDDL 180
Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
+A G ++GWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ R++VVVFDEAHNID
Sbjct: 181 KAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
NVCI+++SV++ R+T++ + NL +++ + R KETD RLR EY RLVEGL +
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQANLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARE 300
Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
+D L+NP LPD++LKEAVPG+IR AEHF+ LRRL++Y++ RL ++VV+E F+
Sbjct: 301 TDAHLANPVLPDEVLKEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
+ + I +K L+FC +RL SL+ TLEI+D +F + + +FATLV TYA+GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLYTLEISDLTDFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
D+R P I +P+L SC DASLAIKPVFERFQSV+ITSGTLSP+D+YP++L+F+PV +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
FTM+L R C+CPM++ RG+DQ+ +S+KF+ R D+ V+RNYG LLLEM + VPDG+V FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ V SW E GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
RGKV+EGIDF HYGR VIMFGVP+ YT S+IL ARLEYLR+ FQI+E DFLTFDA+R A
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
AQCVGR IR K DYG+M+FADKR++R DKR KLP WI HL DA+LNL+ D + +A+ F
Sbjct: 661 AQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDANLNLTVDEGVQVAKYF 720
Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLE 747
LR+MAQP+ + G +LLS E LE
Sbjct: 721 LRQMAQPFHREDQLG-LSLLSLEQLE 745
BLAST of Sed0006598 vs. ExPASy Swiss-Prot
Match:
P18074 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Homo sapiens OX=9606 GN=ERCC2 PE=1 SV=1)
HSP 1 Score: 862.4 bits (2227), Expect = 3.7e-249
Identity = 417/746 (55.90%), Postives = 558/746 (74.80%), Query Frame = 0
Query: 1 MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
MK ++ + V FPYD+IYPEQ++YM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
+ P KLIYC+RTV E+EK + ELR L ++ + G + L + LSSRKNLC++ +
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
V VD C LTAS+VRA ++++ C F+E+++ G LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180
Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
+A G ++GWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ R++VVVFDEAHNID
Sbjct: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
NVCI+++SV++ R+T++ + NL +++ + R KETD RLR EY RLVEGL +
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
+D L+NP LPD++L+EAVPG+IR AEHF+ LRRL++Y++ RL ++VV+E F+
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
+ + I +K L+FC +RL SL+ TLEITD +F + + +FATLV TYA+GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
D+R P I +P+L SC DASLAIKPVFERFQSV+ITSGTLSP+D+YP++L+F+PV +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
FTM+L R C+CPM++ RG+DQ+ +S+KF+ R D+ V+RNYG LLLEM + VPDG+V FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ V SW E GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
RGKV+EGIDF HYGR VIMFGVP+ YT S+IL ARLEYLR+ FQI+E DFLTFDA+R A
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
AQCVGR IR K DYG+M+FADKR++R DKR KLP WI HL DA+LNL+ D + +A+ F
Sbjct: 661 AQCVGRAIRGKTDYGLMVFADKRFARGDKRGKLPRWIQEHLTDANLNLTVDEGVQVAKYF 720
Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLE 747
LR+MAQP+ + G +LLS E LE
Sbjct: 721 LRQMAQPFHREDQLG-LSLLSLEQLE 745
BLAST of Sed0006598 vs. ExPASy Swiss-Prot
Match:
Q60452 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Cricetulus griseus OX=10029 GN=ERCC2 PE=1 SV=1)
HSP 1 Score: 861.3 bits (2224), Expect = 8.2e-249
Identity = 415/746 (55.63%), Postives = 559/746 (74.93%), Query Frame = 0
Query: 1 MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
MK ++ + V FPYD+IYPEQ++YMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60
Query: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
+ P KLIYC+RTV E+EK + ELR L + + G + L + LSSRKNLC++ +
Sbjct: 61 RAFPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
V VD C LTAS+VRA +++++ C F+E+++ G LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDAHGRQVPLPAGIYNLDDL 180
Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
+A G ++GWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ R++VVVFDEAHNID
Sbjct: 181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
NVCI+++SV++ R+T++ + NL+ +++ + R KETD RLR EY RLVEGL +
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
+D L+NP LPD++L+EAVPG+IR AEHF+ LRRL++Y++ RL ++VV+E F+
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
+ + I +K L+FC +RL SL+ TLEI D +F + + +FATLV TYA+GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
D+R P I +P+L SC DASLAIKPVFERFQSV+ITSGTLSP+D+YP++L+F+PV +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
FTM+L R C+CPM++ RG+DQ+ +S+KF+ R D+ V+RNYG LLLEM + VPDG+V FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ V SW E GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
RGKV+EGIDF HYGR VIMFGVP+ YT S+IL ARLEYLR+ FQI+E DFLTFDA+R A
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
AQCVGR IR K DYG+M+FADKR++R DKR KLP WI HL D++LNL+ D + +A+ F
Sbjct: 661 AQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDSNLNLTVDEGVQVAKYF 720
Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLE 747
LR+MAQP+ + G +LLS E L+
Sbjct: 721 LRQMAQPFHREDQLG-LSLLSLEQLQ 745
BLAST of Sed0006598 vs. ExPASy Swiss-Prot
Match:
O08811 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Mus musculus OX=10090 GN=Ercc2 PE=1 SV=2)
HSP 1 Score: 860.5 bits (2222), Expect = 1.4e-248
Identity = 416/746 (55.76%), Postives = 559/746 (74.93%), Query Frame = 0
Query: 1 MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
MK ++ + V FPYD+IYPEQ++YMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60
Query: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
+ P KLIYC+RTV E+EK + ELR L + + G + L + LSSRKNLC++ +
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
V VD C LTAS+VRA +++++ C F+E+++ G LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDIHGRQMPLPAGIYNLDDL 180
Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
+A G ++GWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ R++VVVFDEAHNID
Sbjct: 181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
NVCI+++SV++ R+T++ + NL+ +++ + R KETD RLR EY RLVEGL +
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASVARE 300
Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
+D L+NP LPD++L+EAVPG+IR AEHF+ LRRL++Y++ RL ++VV+E F+
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
+ + I +K L+FC +RL SL+ TLEI D +F + + +FATLV TYA+GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
D+R P I +PVL SC DASLAIKPVFERFQSV+ITSGTLSP+D+YP++L+F+PV +
Sbjct: 421 FDDRTPTIANPVLHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
FTM+L R C+CPM++ RG+DQ+ +S+KF+ R D+ V+RNYG LLLEM + VPDG+V FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ V SW E GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
RGKV+EGIDF HYGR VIMFGVP+ YT S+IL ARLEYLR+ FQI+E DFLTFDA+R A
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
AQCVGR IR K DYG+M+FADKR++R DKR KLP WI HL D++LNL+ D + +A+ F
Sbjct: 661 AQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDSNLNLTVDEGVQVAKYF 720
Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLE 747
LR+MAQP+ + G +LLS E L+
Sbjct: 721 LRQMAQPFHREDQLG-LSLLSLEQLQ 745
BLAST of Sed0006598 vs. ExPASy TrEMBL
Match:
A0A6J1DAB3 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Momordica charantia OX=3673 GN=LOC111018482 PE=3 SV=1)
HSP 1 Score: 1471.1 bits (3807), Expect = 0.0e+00
Identity = 730/758 (96.31%), Postives = 746/758 (98.42%), Query Frame = 0
Query: 1 MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
MKF+LEDVTV FPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY
Sbjct: 1 MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYT 60
Query: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQV LG RAQILAVGLSSRKNLCVN +
Sbjct: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVHQLGPRAQILAVGLSSRKNLCVNPR 120
Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
VLASENRDSVDAGCRKLTASWVRA+AAEN NV +CEFFEQYEKAGS AVLPPGVYTLQDL
Sbjct: 121 VLASENRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSTAVLPPGVYTLQDL 180
Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
NVCIEALSVSVRRQTIEGARRNLNKMRQ+IERFKETDAGRLRAEYNRLVEGLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
+DTWLSNPALPDDILKEAVPGNIRRAEHF+HVLRRLVQYLE RLDTENV KEGLVNFVG+
Sbjct: 301 TDTWLSNPALPDDILKEAVPGNIRRAEHFVHVLRRLVQYLEGRLDTENVEKEGLVNFVGS 360
Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
+GSQAGIDQKTLKFCYDRLHSL++TLEITDTDEFLHIQTICDFATL+GTYARGFSIIIEP
Sbjct: 361 VGSQAGIDQKTLKFCYDRLHSLLLTLEITDTDEFLHIQTICDFATLIGTYARGFSIIIEP 420
Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDG+VCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SYSYMDGI+NSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIINSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
LRKMAQPYDKAGSSG+KTLLSQEDLEKMSE NMN+MLY
Sbjct: 721 LRKMAQPYDKAGSSGRKTLLSQEDLEKMSEGNMNEMLY 758
BLAST of Sed0006598 vs. ExPASy TrEMBL
Match:
A0A1S3BRE4 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucumis melo OX=3656 GN=LOC103492682 PE=3 SV=1)
HSP 1 Score: 1470.3 bits (3805), Expect = 0.0e+00
Identity = 732/758 (96.57%), Postives = 748/758 (98.68%), Query Frame = 0
Query: 1 MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
MKF+LEDVTV FPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA
Sbjct: 1 MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
Query: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQV+ LG RAQILAVGLSSRKNLCVN K
Sbjct: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPK 120
Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
VLASE+RDSVDAGCRKLTASWVRA+AAEN NV +CEFFEQYEKAGS+AVLPPGVYTLQDL
Sbjct: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
NVCIEALSVSVRRQTIEGARRNLNKMRQ+IERFKETDAGRLRAEYNRLVEGLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLE RLDT+NV KEGLV FVG+
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTDNVEKEGLVTFVGS 360
Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
IGSQAGIDQKTLKFCYDRLHSLM+TLEITDTDEFLH+QTICDFATLVGTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420
Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVS VPDG+VCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSTVPDGIVCFFV 540
Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
LRKMAQPYDKAGS+G+KTLLSQEDLEKMSE+NMN+MLY
Sbjct: 721 LRKMAQPYDKAGSTGRKTLLSQEDLEKMSEANMNEMLY 758
BLAST of Sed0006598 vs. ExPASy TrEMBL
Match:
A0A0A0K5Q0 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucumis sativus OX=3659 GN=Csa_7G390040 PE=3 SV=1)
HSP 1 Score: 1469.9 bits (3804), Expect = 0.0e+00
Identity = 732/758 (96.57%), Postives = 748/758 (98.68%), Query Frame = 0
Query: 1 MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
MKF+LEDVTV FPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA
Sbjct: 1 MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
Query: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQV+ LG RAQILAVGLSSRKNLCVN
Sbjct: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQLGPRAQILAVGLSSRKNLCVNPN 120
Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
VLASE+RDSVDAGCRKLTASWVRA+AAEN +V +CEFFEQYEKAGS+AVLPPGVYTLQDL
Sbjct: 121 VLASESRDSVDAGCRKLTASWVRAMAAENPDVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
NVCIEALSVSVRRQTIEGARRNLNKMRQ+IERFKETDAGRLRAEYNRLVEGLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLE RLDTENV KEGLV FVG+
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKEGLVTFVGS 360
Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
IGSQAGIDQKTLKFCYDRLHSLM+TLEITDTDEFLH+QTICDFATLVGTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420
Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDG+VCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SYSYMDGI+NSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIINSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
LRKMAQPYDKAGSSG+KTLLSQEDLEKMSE+NMN+MLY
Sbjct: 721 LRKMAQPYDKAGSSGRKTLLSQEDLEKMSEANMNEMLY 758
BLAST of Sed0006598 vs. ExPASy TrEMBL
Match:
A0A6J1GNB9 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucurbita moschata OX=3662 GN=LOC111456016 PE=3 SV=1)
HSP 1 Score: 1465.7 bits (3793), Expect = 0.0e+00
Identity = 731/758 (96.44%), Postives = 746/758 (98.42%), Query Frame = 0
Query: 1 MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
MKF+LEDVTV FPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY
Sbjct: 1 MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
Query: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQV+ +G RAQILAVGLSSRKNLCVN
Sbjct: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQVGPRAQILAVGLSSRKNLCVNPA 120
Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
VLASENRDSVDAGCRKLTASWVRA+AAEN NV +CEFFEQYEKAGS+AVLPPGVYTLQDL
Sbjct: 121 VLASENRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
NVCIEALSVSVRRQTIEGARRNLNKMRQ+IERFKETDAGRLRAEYNRLV+GLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVDGLAQRGNLPI 300
Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLE RLDTENV KEGLV FV +
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKEGLVTFVSS 360
Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
IGSQAGIDQKTLKFCYDRL+SLM+TLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLYSLMLTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDG+VCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
LRKMAQPYDKAGSSG+KTLLSQEDLEKMSE+NMN+MLY
Sbjct: 721 LRKMAQPYDKAGSSGRKTLLSQEDLEKMSEANMNEMLY 758
BLAST of Sed0006598 vs. ExPASy TrEMBL
Match:
A0A6J1JQ08 (General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucurbita maxima OX=3661 GN=LOC111488815 PE=3 SV=1)
HSP 1 Score: 1464.5 bits (3790), Expect = 0.0e+00
Identity = 729/758 (96.17%), Postives = 746/758 (98.42%), Query Frame = 0
Query: 1 MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
MKF+LEDVTV FPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY
Sbjct: 1 MKFQLEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
Query: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQV+ +G RAQILAVGLSSRKNLCVN
Sbjct: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVQQVGPRAQILAVGLSSRKNLCVNPA 120
Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
VLASENRDSVDAGCRKLTASWVRA+AAEN NV +CEFFEQYEKAGS+AVLPPGVYTLQDL
Sbjct: 121 VLASENRDSVDAGCRKLTASWVRAMAAENPNVPTCEFFEQYEKAGSSAVLPPGVYTLQDL 180
Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID
Sbjct: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
NVCIEALSVSVRRQTIEGARRNLNKMRQ+IERFKETDAGRLRAEYNRLV+GLAQRGNLPI
Sbjct: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQEIERFKETDAGRLRAEYNRLVDGLAQRGNLPI 300
Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLE RLDTENV KEG+V FV +
Sbjct: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKEGIVTFVSS 360
Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
IGSQAGIDQKTLKFCYDRL+SLM+TLEITDTDEFLH+QTICDFATLVGTYARGFSIIIEP
Sbjct: 361 IGSQAGIDQKTLKFCYDRLYSLMLTLEITDTDEFLHVQTICDFATLVGTYARGFSIIIEP 420
Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
Sbjct: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDG+VCFFV
Sbjct: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGIVCFFV 540
Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
LRKMAQPYDKAGSSG+KTLLSQEDLEKMSE+NMN+MLY
Sbjct: 721 LRKMAQPYDKAGSSGRKTLLSQEDLEKMSEANMNEMLY 758
BLAST of Sed0006598 vs. TAIR 10
Match:
AT1G03190.1 (RAD3-like DNA-binding helicase protein )
HSP 1 Score: 1330.9 bits (3443), Expect = 0.0e+00
Identity = 651/758 (85.88%), Postives = 707/758 (93.27%), Query Frame = 0
Query: 1 MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
M F++EDVTV FPYD+IYPEQY YM+ELKRALDAKGHCLLEMPTGTGKTIALLSLITSY
Sbjct: 1 MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR 60
Query: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
LS+P +P+KL+YCTRTVHEMEKTL EL+LLHDYQVR LG++A+ILA+GLSSRKNLCVN+K
Sbjct: 61 LSRPDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNTK 120
Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
VLA+ENRDSVDA CRK TASWVRAL+ EN NV C+FFE YEKA NA+LPPGVYTL+DL
Sbjct: 121 VLAAENRDSVDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVYTLEDL 180
Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
RAFG +GWCPYFLARHM+QFANV+VYSYQYLLDPKVA ISKE+Q+ESVVVFDEAHNID
Sbjct: 181 RAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
NVCIEALSVSVRR T+EGA RNLNK+RQ+I+RFK TDAGRLRAEYNRLVEGLA RG+L
Sbjct: 241 NVCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVEGLALRGDLSG 300
Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
D WL+NPALP DILKEAVPGNIRRAEHF+HVLRRL+QYL RLDTENV KE V+FV +
Sbjct: 301 GDQWLANPALPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTENVEKESPVSFVSS 360
Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
+ SQAGI+QKTLKFCYDRL SLM+TLEITDTDEFL IQT+CDFATLVGTYARGFSIIIEP
Sbjct: 361 LNSQAGIEQKTLKFCYDRLQSLMLTLEITDTDEFLPIQTVCDFATLVGTYARGFSIIIEP 420
Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
DERMPHIPDP+LQLSCHDASLAIKPVF+RFQSVVITSGTLSPIDLYPRLLNF PVVSRS
Sbjct: 421 YDERMPHIPDPILQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFTPVVSRS 480
Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
F MS+TRDCICPMVLTRGSDQLPVSTKFDMRSD GVVRNYG+LL+EMVS VPDGVVCFFV
Sbjct: 481 FKMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCFFV 540
Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SYSYMDGI+ +WNETGILKEIMQ KLVFIETQDVVETTLALDNYR+ACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIIATWNETGILKEIMQQKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
RGKVAEGIDFDRHYGRLV+M+GVPFQYTLSKIL ARLEYL +TFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVVMYGVPFQYTLSKILRARLEYLHDTFQIKEGDFLTFDALRQA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMA+HIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAIHIAREF 720
Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
LRKMAQPYDKAG+ G+KTLL+QEDLEKM+E+ + DM Y
Sbjct: 721 LRKMAQPYDKAGTMGRKTLLTQEDLEKMAETGVQDMAY 758
BLAST of Sed0006598 vs. TAIR 10
Match:
AT1G03190.2 (RAD3-like DNA-binding helicase protein )
HSP 1 Score: 1330.9 bits (3443), Expect = 0.0e+00
Identity = 651/758 (85.88%), Postives = 707/758 (93.27%), Query Frame = 0
Query: 1 MKFELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYA 60
M F++EDVTV FPYD+IYPEQY YM+ELKRALDAKGHCLLEMPTGTGKTIALLSLITSY
Sbjct: 1 MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR 60
Query: 61 LSKPQNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSK 120
LS+P +P+KL+YCTRTVHEMEKTL EL+LLHDYQVR LG++A+ILA+GLSSRKNLCVN+K
Sbjct: 61 LSRPDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNTK 120
Query: 121 VLASENRDSVDAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDL 180
VLA+ENRDSVDA CRK TASWVRAL+ EN NV C+FFE YEKA NA+LPPGVYTL+DL
Sbjct: 121 VLAAENRDSVDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVYTLEDL 180
Query: 181 RAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNID 240
RAFG +GWCPYFLARHM+QFANV+VYSYQYLLDPKVA ISKE+Q+ESVVVFDEAHNID
Sbjct: 181 RAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEGLAQRGNLPI 300
NVCIEALSVSVRR T+EGA RNLNK+RQ+I+RFK TDAGRLRAEYNRLVEGLA RG+L
Sbjct: 241 NVCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVEGLALRGDLSG 300
Query: 301 SDTWLSNPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGN 360
D WL+NPALP DILKEAVPGNIRRAEHF+HVLRRL+QYL RLDTENV KE V+FV +
Sbjct: 301 GDQWLANPALPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTENVEKESPVSFVSS 360
Query: 361 IGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP 420
+ SQAGI+QKTLKFCYDRL SLM+TLEITDTDEFL IQT+CDFATLVGTYARGFSIIIEP
Sbjct: 361 LNSQAGIEQKTLKFCYDRLQSLMLTLEITDTDEFLPIQTVCDFATLVGTYARGFSIIIEP 420
Query: 421 VDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS 480
DERMPHIPDP+LQLSCHDASLAIKPVF+RFQSVVITSGTLSPIDLYPRLLNF PVVSRS
Sbjct: 421 YDERMPHIPDPILQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFTPVVSRS 480
Query: 481 FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFV 540
F MS+TRDCICPMVLTRGSDQLPVSTKFDMRSD GVVRNYG+LL+EMVS VPDGVVCFFV
Sbjct: 481 FKMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCFFV 540
Query: 541 SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SYSYMDGI+ +WNETGILKEIMQ KLVFIETQDVVETTLALDNYR+ACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIIATWNETGILKEIMQQKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA 660
RGKVAEGIDFDRHYGRLV+M+GVPFQYTLSKIL ARLEYL +TFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVVMYGVPFQYTLSKILRARLEYLHDTFQIKEGDFLTFDALRQA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF 720
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMA+HIAREF
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAIHIAREF 720
Query: 721 LRKMAQPYDKAGSSGKKTLLSQEDLEKMSESNMNDMLY 759
LRKMAQPYDKAG+ G+KTLL+QEDLEKM+E+ + DM Y
Sbjct: 721 LRKMAQPYDKAGTMGRKTLLTQEDLEKMAETGVQDMAY 758
BLAST of Sed0006598 vs. TAIR 10
Match:
AT1G20720.1 (RAD3-like DNA-binding helicase protein )
HSP 1 Score: 167.9 bits (424), Expect = 3.1e-41
Identity = 196/837 (23.42%), Postives = 332/837 (39.67%), Query Frame = 0
Query: 3 FELEDVTVCFPYDHIYPEQYAYMLELKRALD---AKGHC--LLEMPTGTGKTIALLSLIT 62
+++ + V FPY Y Q A+M + LD GHC LLE PTGTGK+++LL +
Sbjct: 27 YQIGGLQVEFPYQP-YGTQLAFMSRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSVL 86
Query: 63 SYA----------------------------------------------LSKPQNPVKLI 122
++ + K + K
Sbjct: 87 AWQQNYKSRLLKGNLSHSKAAPEAATDPLNHGGGFIPETQPSDTPASTNVEKAETATKKR 146
Query: 123 YCTRTVHEMEKTLAEL-RLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSKVLASENRDSV 182
T++ +T +++ +++ +Y R G R + L+SRK+ C N VL +D+V
Sbjct: 147 TKIPTIYYASRTHSQITQVIREY--RKTGYRVPMAV--LASRKHYCTNRHVL---GKDNV 206
Query: 183 DAGCRKLTASWVRALAAENSNVASCEFFEQYEKAGSNAVLPPGVYTLQDLRAFGTKKGWC 242
D CR L +E NV + G N V+ ++DL G C
Sbjct: 207 DDECRLLLKDKANIQCSEFKNVNKITSHPSLQPRGHNE-----VHDIEDLVKVGKNVRGC 266
Query: 243 PYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVVVFDEAHNIDNVCIEALSVS 302
PYF + M + A +V Y Y+++P + + + ++ + ++++FDEAHN++++ EA S++
Sbjct: 267 PYFASWSMAENAQLVFCPYSYIVNPVIRAGVEVDL-KGAIIIFDEAHNMEDIAREAGSIN 326
Query: 303 VRRQTIEGARRNLNKMR----QDIERFKETDAGRLRAEYNRLVEGLAQRGNLPISDTWLS 362
+ T+ + L +M + E G L + R + LA+R +W
Sbjct: 327 LEEDTLFKLQNELEQMSVAQPMIYQPLCEVVEG-LISWIGRKKDSLAKRDFQHYFSSWTG 386
Query: 363 NPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTENVVKEGLVNFVGNIGSQAG 422
D L+E NI R E F +L + + + E ++ +G
Sbjct: 387 -----DKALRELEESNITR-ECFPILLECFTKAIRTSKEAE---------MESDMLYLSG 446
Query: 423 IDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEPVDERMP 482
I TL+ + L D L +Q GT+ FS
Sbjct: 447 ISVLTLEELFSSLTYFFSRNGSHILDYQLGLQRSTKRGDPSGTWTHTFS----------- 506
Query: 483 HIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRSFTMSLT 542
L C + ++ K + + SV++TSGTLSP++ +F+ + F SL
Sbjct: 507 --------LWCMNPAVVFKDLADISLSVILTSGTLSPMN------SFSSELGMQFGTSLE 566
Query: 543 RDCICPM-------VLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFF 602
+ ++ G P++ + G+ L E+ + VP G + FF
Sbjct: 567 APHVIDPNMQVWAGAISNGPSNYPLNASYKTADAYSFQDALGKSLEEICTIVPGGSLVFF 626
Query: 603 VSYSYMDGIVNSWNETGILKEIMQHKLVFIE----TQDVVETTL------------ALDN 662
SY M+ + W ET + K +F+E QD ++ L +
Sbjct: 627 PSYKLMEKLCMRWRETEQWSRLCLKKDLFVEPRGGAQDEFDSVLKGYYDSIRGKNKIIGR 686
Query: 663 YRKACDCG-----------RGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKI 722
R+A G +GA F +V RGKV+EGIDF R VI+ G+PF L I
Sbjct: 687 NRRAKKAGPIKTETQDDSKKGAAFLAVCRGKVSEGIDFADDNARAVIIVGIPFP-NLHDI 746
Query: 723 LLARLEYLRETFQIKE-----GDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRH 745
+ + +T++ + ++ A R Q GR IR + DYG +IF D+RY
Sbjct: 747 QVGLKKKYNDTYKSSKSLLGGSEWYCQQAYRALNQAAGRCIRHRFDYGAIIFLDERYKEQ 798
BLAST of Sed0006598 vs. TAIR 10
Match:
AT1G79950.1 (RAD3-like DNA-binding helicase protein )
HSP 1 Score: 162.9 bits (411), Expect = 9.9e-40
Identity = 175/807 (21.69%), Postives = 330/807 (40.89%), Query Frame = 0
Query: 3 FELEDVTVCFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY--- 62
+ + + V FP++ Y Q YM + +L K H LLE PTGTGKT+ LL ++
Sbjct: 49 YSIRGINVEFPFE-AYQSQIIYMDRVIESLQNKCHALLESPTGTGKTLCLLCATLAWRKS 108
Query: 63 ---------------ALSKPQNPVK------------LIYCTRTVHEMEKTLAELRLLHD 122
S P+ ++Y +RT ++ + + EL+
Sbjct: 109 LGSFSTRKDRKNSAIPWSDSDEPLSQSGGGGGGAFPTIVYASRTHSQLRQVIKELK-RSS 168
Query: 123 YQVRLLGSRAQILAVGLSSRKNLCVNSKVLASENRDSVDAGCRKLTASWVRALAAENSNV 182
Y+ ++ V L SR+ LCVN +V + + +A C+ L +
Sbjct: 169 YRPKM---------VVLGSREQLCVNEEVNSLRGKALTNA-CQYL---------CKKRGK 228
Query: 183 ASCEFFEQY-EKAGSNAVLPPGVYTLQDLRAFGTKKGWCPYFLARHMVQFANVVVYSYQY 242
C F + + N + ++DL G G CPY++ R + + +++ Y Y
Sbjct: 229 RQCNHFNRLPDYLKHNPHIGDEPVDIEDLVNIGKDSGPCPYYITRELHKDVDIIFAPYNY 288
Query: 243 LLDPKVASIISKEMQRESVVVFDEAHNIDNVCIEALSVSVRRQTIEGARRNLNKMRQ-DI 302
L+ + K SV++FDEAHN++++C ++ S + + + Q
Sbjct: 289 LISNGYRKFL-KVNWTNSVLIFDEAHNLESLCADSASFDLPSVLLSACISEAQECVQLAA 348
Query: 303 ERFKETDAGRLRAEYNRLVEGLAQRGNLPISDTWLSNPALPDDILKEAVPGNIRRAEHFI 362
R + + E +++GL + L + I K +P +R E F
Sbjct: 349 ARRDSLNDVSINPENFAILKGLLLK--------------LQELISKVPIP---KRDEGF- 408
Query: 363 HVLRRLVQYLEARLDTENVVKEGLVNFVGNIGSQAGIDQKTLKFCYDRLHSLMMTLEITD 422
+ Y+ L + N+ E +G + A L + T
Sbjct: 409 ---TKPGPYIYEMLKSLNITHETAPKLIGTVEEAAVF--------------LEEEKQRTA 468
Query: 423 TDEFLHIQTICDFATLV-----GTYARGFSIIIEPVDERMPHI----PDPVLQLSCHDAS 482
T+ ++ I D L+ +A + + ++ +++ + L C
Sbjct: 469 TNAGSKLEIIADMLKLIFRENGSNHADVYRVHVQELEQNSTDVMKGKVSRTLSWWCFSPG 528
Query: 483 LAIKPVFER-FQSVVITSGTLSPIDLYPRLLNFNPVVSRSFTMSLTRDCICPMVLTRGSD 542
+ + + ++ S+++TSGTLSP+D + L + + ++ + + V++ G
Sbjct: 529 ITMLDIAQKGVGSIILTSGTLSPMDSLAQELKLDFPIRLENPHVISSNQLWAGVVSTGPS 588
Query: 543 QLPVSTKFDMRSDLGVVRNYGRLLLEMVSAVPDGVVCFFVSYSYMDGIVNSW------NE 602
+++ + R + G ++ VP+G++ FF SY MD + W N
Sbjct: 589 GYVLNSSYRNRDVPEYKQELGNAIVNFSRVVPEGLLIFFPSYYLMDSCITFWKNGCYRNS 648
Query: 603 TGILKEIMQHKLVFIETQDVVETTLALDNYRKACD--CGRGAVFFSVARGKVAEGIDFDR 662
+ + I + K IE +D A+ ++ + G VFF+V RGKV+EG+DF
Sbjct: 649 MTVWERICKLKKPVIEPKDSSLFPAAMRDFSEKLQDRATSGVVFFAVCRGKVSEGLDFAD 708
Query: 663 HYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKE-----------GDFLTFDALRQAA 722
GR V++ G+P+ + + E+L E Q+ + + + +A R
Sbjct: 709 GAGRAVVITGLPYARVTDPRVKLKREFLDEQSQLADVKLPRSTLLSGSMWYSQEAARAVN 768
Query: 723 QCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLR--DAHLNLSTDMALHIARE 747
Q +GRVIR + DYG +IF D R+ + ++SK+ WI +++ + + +D+A E
Sbjct: 769 QAIGRVIRHRHDYGAIIFCDDRFEQPSQQSKISLWIRPNVKCYSRYGEVISDLARFFRTE 798
BLAST of Sed0006598 vs. TAIR 10
Match:
AT1G79890.1 (RAD3-like DNA-binding helicase protein )
HSP 1 Score: 151.4 bits (381), Expect = 3.0e-36
Identity = 153/697 (21.95%), Postives = 282/697 (40.46%), Query Frame = 0
Query: 65 QNPVKLIYCTRTVHEMEKTLAELRLLHDYQVRLLGSRAQILAVGLSSRKNLCVNSKVLAS 124
Q K+ +C+RT ++ + + ELR + + +++ +G SRKNLC+N VL
Sbjct: 180 QGGFKVFFCSRTHSQLSQFVKELR------KTVFAKKLKVVCLG--SRKNLCINEDVLKL 239
Query: 125 ENRDSVDAGCRKLTASWVRALAAE---NSNV------ASCEF----FEQYEKAGSNAVLP 184
N ++ C L + ++ + +NV ASC + ++
Sbjct: 240 GNVTRINERCLDLQKKKISQVSKKKNLGANVRIVRTKASCRCPMLRKHKLQREFKAESFQ 299
Query: 185 PGVYTLQDLRAFGTKKGWCPYFLARHMVQFANVVVYSYQYLLDPKVASIISKEMQRESVV 244
++DL G + CPY+ +R M A++V+ YQ LL + + + SVV
Sbjct: 300 QEAMDIEDLVQLGREMRTCPYYGSRRMAPAADLVILPYQSLLSKSSRESLGLSL-KNSVV 359
Query: 245 VFDEAHNIDNVCIEALSVSVRRQTIEGARRNLNKMRQDIERFKETDAGRLRAEYNRLVEG 304
+ DEAHN+ + + + +E ++ + RF+ G Y +++
Sbjct: 360 IIDEAHNLADTLLSMHDAKLTVSQLEDIHCSIESY---LGRFQNL-LGAGNRRYIQIMLI 419
Query: 305 LAQRGNLPI-SDTWLS--NPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEARLDTEN 364
L + P+ SD LS N L + ++ P + + + +
Sbjct: 420 LTRAFLKPLASDRNLSSVNVGLDTENPSKSKPCGACSMAIYDFLFSLNIDNINLVKLLAY 479
Query: 365 VVKEGLVNFVGNIGSQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVG 424
+ + +++ V G + + ++ + L +D L
Sbjct: 480 IKESNIIHKVSGYGERVAAMLQKDPVAHEEMSKLTSFRAFSDM-----------LVALTN 539
Query: 425 TYARGFSIIIEPVDERMPHIPDPVLQLSCHDASLAIKPVFERFQSVVITSGTLSPID--- 484
G II + + A L V + +V++ GTL PI+
Sbjct: 540 NNGDGRIIISRTSSSTSGQHGGYIKYVMLTGAKL-FSEVVDEAHAVILAGGTLQPIEETR 599
Query: 485 --LYPRLLNFNPVVSRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRL 544
L+P L + N + S + + + I P+ ++ G RS +G+++ G L
Sbjct: 600 ERLFPWLPS-NQLQFFSCSHIVPPESIMPIAVSHGPSGQSFDFSHSSRSSIGMIQELGLL 659
Query: 545 LLEMVSAVPDGVVCFFVSYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDN 604
+ +V+ VP+G++ FF S+ Y + +W+ +GIL+ I++ K VF E + E L +
Sbjct: 660 MSNLVAVVPEGIIVFFSSFEYETQVHTAWSNSGILRRIVKKKRVFREPRKNTEVEAVLRD 719
Query: 605 YRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLR-- 664
Y++A + RGA+ +V GKV+EGI+F R V+M G+P+ LL R++++
Sbjct: 720 YKEAIESERGAIMLAVVGGKVSEGINFSDSMCRCVVMVGLPYPSPSDIELLERIKHIEGR 779
Query: 665 -ETFQIKEGDFLTFDA----------------------------LRQAAQCVGRVIRSKA 702
++ IK L D+ ++ Q +GR IR +
Sbjct: 780 ADSDSIKPSVTLVDDSYYSGDVQAGFGVLKSCKRRGKEYYENLCMKAVNQSIGRAIRHEK 839
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022150277.1 | 0.0e+00 | 96.31 | DNA repair helicase XPD [Momordica charantia] | [more] |
| XP_038898338.1 | 0.0e+00 | 96.83 | general transcription and DNA repair factor IIH helicase subunit XPD isoform X1 ... | [more] |
| XP_008451374.1 | 0.0e+00 | 96.57 | PREDICTED: DNA repair helicase XPD isoform X2 [Cucumis melo] | [more] |
| XP_011659313.1 | 0.0e+00 | 96.57 | general transcription and DNA repair factor IIH helicase subunit XPD [Cucumis sa... | [more] |
| XP_022953477.1 | 0.0e+00 | 96.44 | DNA repair helicase XPD [Cucurbita moschata] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Q8W4M7 | 0.0e+00 | 85.88 | General transcription and DNA repair factor IIH helicase subunit XPD OS=Arabidop... | [more] |
| A6QLJ0 | 2.6e-250 | 56.17 | General transcription and DNA repair factor IIH helicase subunit XPD OS=Bos taur... | [more] |
| P18074 | 3.7e-249 | 55.90 | General transcription and DNA repair factor IIH helicase subunit XPD OS=Homo sap... | [more] |
| Q60452 | 8.2e-249 | 55.63 | General transcription and DNA repair factor IIH helicase subunit XPD OS=Cricetul... | [more] |
| O08811 | 1.4e-248 | 55.76 | General transcription and DNA repair factor IIH helicase subunit XPD OS=Mus musc... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1DAB3 | 0.0e+00 | 96.31 | General transcription and DNA repair factor IIH helicase subunit XPD OS=Momordic... | [more] |
| A0A1S3BRE4 | 0.0e+00 | 96.57 | General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucumis ... | [more] |
| A0A0A0K5Q0 | 0.0e+00 | 96.57 | General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucumis ... | [more] |
| A0A6J1GNB9 | 0.0e+00 | 96.44 | General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucurbit... | [more] |
| A0A6J1JQ08 | 0.0e+00 | 96.17 | General transcription and DNA repair factor IIH helicase subunit XPD OS=Cucurbit... | [more] |
