Lag0039583 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039583
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Enzymatic polyprotein
Location	chr2: 46825424 .. 46826322 (+)
RNA-Seq Expression	Lag0039583
Synteny	Lag0039583

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTTTAGAATCTATTACAAGCTTATGAATACAAACATCTCTCCAAGAACCCTTAGATCTTCACCCAAAGGATCCACTGTTCTCTTGGAAGCAAATCTCGACAAATCCGCAATCACTGTTCCCAAAAGTTTATCTTGGGAACAAATCACCAGAAATCCTACATGGAAGCTTACGGAAGCTTTCCCCCCAGCAAAAAGGAATACAAATTTAGCCCAATTTTTCGAACATCCTAATGGATCAGTAAAAGTTCAATTTTCTGAAGAACCAGAAACCTCAAAGGTCAAGGACTTCATGTCTTCACGGCCCAGTACATCTGGATCATCCTCAGAACTTGAATCCAAATTCTATATTGGTAGATCTAACTCTCTACGGGTAAAATCAGTCAATATAGAACAAAATGTGGCAAATGTTCAATACAAAGACCAAACTAGGTCCTCACGATTCTTAGGAAAACAGCCAAGTATCTTCGTCTTCAAAATATAGGATCTTTGATCTTGTTCGTACTGCTGCTTCATCTTCTAAAGCTGTGATTTAGCAGGAATGTATTTACAGTGTAAACTAGACTACTTACAAAGTTTACACCTTTTAAAACTAAAGGAGAGAATTCACAACACTTTTTTTTTTTTTTTTAGGAAATACTTCTTTATGAAGCATCCCTTATGAACACCATTTGTTTCTTTGTGAAACAGGATATTTTAATTGATTCGGAGCTCACATAGGCTGTGAGTCGAGGAACGGGTCGTCCAGATCGTAATCCGGCTCGCTTTCTTCTTCTTATTGTGCTGAAGAAGCTGGAGATGCGCTTCTGTTTGAAGCCGCCATCTGAAGAATCCTTTGGAAGTCTGCATCAGATGTTGTCTGTGCAAGAGCTGCTAGAAGCTTTGATTTATCATTGA

mRNA sequence

ATGATCTTTAGAATCTATTACAAGCTTATGAATACAAACATCTCTCCAAGAACCCTTAGATCTTCACCCAAAGGATCCACTGTTCTCTTGGAAGCAAATCTCGACAAATCCGCAATCACTGTTCCCAAAAGTTTATCTTGGGAACAAATCACCAGAAATCCTACATGGAAGCTTACGGAAGCTTTCCCCCCAGCAAAAAGGAATACAAATTTAGCCCAATTTTTCGAACATCCTAATGGATCAGTAAAAGTTCAATTTTCTGAAGAACCAGAAACCTCAAAGGTCAAGGACTTCATGTCTTCACGGCCCAGTACATCTGGATCATCCTCAGAACTTGAATCCAAATTCTATATTGGTAGATCTAACTCTCTACGGGCTGTGAGTCGAGGAACGGGTCGTCCAGATCGTAATCCGGCTCGCTTTCTTCTTCTTATTGTGCTGAAGAAGCTGGAGATGCGCTTCTGTTTGAAGCCGCCATCTGAAGAATCCTTTGGAAGTCTGCATCAGATGTTGTCTGTGCAAGAGCTGCTAGAAGCTTTGATTTATCATTGA

Coding sequence (CDS)

ATGATCTTTAGAATCTATTACAAGCTTATGAATACAAACATCTCTCCAAGAACCCTTAGATCTTCACCCAAAGGATCCACTGTTCTCTTGGAAGCAAATCTCGACAAATCCGCAATCACTGTTCCCAAAAGTTTATCTTGGGAACAAATCACCAGAAATCCTACATGGAAGCTTACGGAAGCTTTCCCCCCAGCAAAAAGGAATACAAATTTAGCCCAATTTTTCGAACATCCTAATGGATCAGTAAAAGTTCAATTTTCTGAAGAACCAGAAACCTCAAAGGTCAAGGACTTCATGTCTTCACGGCCCAGTACATCTGGATCATCCTCAGAACTTGAATCCAAATTCTATATTGGTAGATCTAACTCTCTACGGGCTGTGAGTCGAGGAACGGGTCGTCCAGATCGTAATCCGGCTCGCTTTCTTCTTCTTATTGTGCTGAAGAAGCTGGAGATGCGCTTCTGTTTGAAGCCGCCATCTGAAGAATCCTTTGGAAGTCTGCATCAGATGTTGTCTGTGCAAGAGCTGCTAGAAGCTTTGATTTATCATTGA

Protein sequence

MIFRIYYKLMNTNISPRTLRSSPKGSTVLLEANLDKSAITVPKSLSWEQITRNPTWKLTEAFPPAKRNTNLAQFFEHPNGSVKVQFSEEPETSKVKDFMSSRPSTSGSSSELESKFYIGRSNSLRAVSRGTGRPDRNPARFLLLIVLKKLEMRFCLKPPSEESFGSLHQMLSVQELLEALIYH

Homology

[Close]

BLAST of Lag0039583 vs. NCBI nr
Match: KAA0041674.1 (movement protein [Cucumis melo var. makuwa] >TYK06295.1 movement protein [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 7.2e-23
Identity = 57/124 (45.97%), Postives = 87/124 (70.16%), Query Frame = 0


Query: 3   FRIYYKLMNTNISPRTLRSSPKGSTVLLEANLDKSAITVPKSLSWEQITRNPTWKLTEAF 62
           +RIY+KLM+TN+SP+ L  SPKG T+L+E N++KS++T+P++L W+++T+NP WKL    
Sbjct: 213 YRIYFKLMHTNLSPKALGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGET 272

Query: 63  PPAKRNTNLAQFFEHPNGSVKVQFSEEPETSKVKDFMSSRPSTSGSSSELESKFYIGRSN 122
            P KR++  A   E P+G+V+VQF+      ++ + MSSRPSTS   +E   K  + RS 
Sbjct: 273 TPIKRSSTEASITEFPDGNVEVQFNTGISYPRISEIMSSRPSTSSIKTETSYKDTLRRSE 332

Query: 123 SLRA 127
           S+RA
Sbjct: 333 SIRA 336

[Close]

BLAST of Lag0039583 vs. NCBI nr
Match: KAA0057417.1 (Enzymatic polyprotein [Cucumis melo var. makuwa] >TYK30116.1 Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 9.5e-23
Identity = 56/124 (45.16%), Postives = 87/124 (70.16%), Query Frame = 0


Query: 3   FRIYYKLMNTNISPRTLRSSPKGSTVLLEANLDKSAITVPKSLSWEQITRNPTWKLTEAF 62
           +RIY+KLM+TN+SP+ L  SPKG T+L+E N++KS++T+P++L W+++T+NP WKL    
Sbjct: 119 YRIYFKLMHTNLSPKALGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGET 178

Query: 63  PPAKRNTNLAQFFEHPNGSVKVQFSEEPETSKVKDFMSSRPSTSGSSSELESKFYIGRSN 122
            P KR++  A   E P+G+V+VQF+      ++ + MSSRPSTS   +E   +  + RS 
Sbjct: 179 TPIKRSSTEASIIEFPDGNVEVQFNTGISYPRISEIMSSRPSTSSIKTETSYRDTLRRSE 238

Query: 123 SLRA 127
           S+RA
Sbjct: 239 SIRA 242

[Close]

BLAST of Lag0039583 vs. NCBI nr
Match: KAA0056776.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 9.5e-23
Identity = 57/124 (45.97%), Postives = 86/124 (69.35%), Query Frame = 0


Query: 3   FRIYYKLMNTNISPRTLRSSPKGSTVLLEANLDKSAITVPKSLSWEQITRNPTWKLTEAF 62
           +RIY+KLM+TN+SP+ L  SPKG T+L+E N++KS++T+P++L W+++T+NP WKL    
Sbjct: 214 YRIYFKLMHTNLSPKALGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGET 273

Query: 63  PPAKRNTNLAQFFEHPNGSVKVQFSEEPETSKVKDFMSSRPSTSGSSSELESKFYIGRSN 122
            P  R++  A   E P+G+V+VQF+      K+ + MSSRPSTS   SE   +  + RS 
Sbjct: 274 APVTRSSTEASITEFPDGNVEVQFNSGLSYPKISEIMSSRPSTSSIKSEASYRETLRRSE 333

Query: 123 SLRA 127
           S+RA
Sbjct: 334 SIRA 337

[Close]

BLAST of Lag0039583 vs. NCBI nr
Match: KAA0050445.1 (hypothetical protein E6C27_scaffold175G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-22
Identity = 56/124 (45.16%), Postives = 87/124 (70.16%), Query Frame = 0


Query: 3   FRIYYKLMNTNISPRTLRSSPKGSTVLLEANLDKSAITVPKSLSWEQITRNPTWKLTEAF 62
           +RIY+KLM+TN+SP+ L  SPKG T+L+E N++KS++T+P++L+W+++T+NP WKL    
Sbjct: 119 YRIYFKLMHTNLSPKALGVSPKGYTMLMEVNIEKSSMTIPRNLNWDELTKNPVWKLQGET 178

Query: 63  PPAKRNTNLAQFFEHPNGSVKVQFSEEPETSKVKDFMSSRPSTSGSSSELESKFYIGRSN 122
            P KR++  A   E P+G+V+VQF+      ++ + MSSRPST    SE   +  + RS 
Sbjct: 179 APIKRSSTEASITEFPDGNVEVQFNTGISYPRISEIMSSRPSTPSIKSETSYRDTLRRSE 238

Query: 123 SLRA 127
           S+RA
Sbjct: 239 SIRA 242

[Close]

BLAST of Lag0039583 vs. NCBI nr
Match: KAA0059217.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-22
Identity = 57/124 (45.97%), Postives = 86/124 (69.35%), Query Frame = 0


Query: 3   FRIYYKLMNTNISPRTLRSSPKGSTVLLEANLDKSAITVPKSLSWEQITRNPTWKLTEAF 62
           +RIY+KLM+TN+SP+ L  SPKG T+L+E N++KS++T+P++L W+++T+NP WKL    
Sbjct: 214 YRIYFKLMHTNLSPKALGISPKGYTMLMEVNVEKSSMTIPRNLKWDELTKNPIWKLQGET 273

Query: 63  PPAKRNTNLAQFFEHPNGSVKVQFSEEPETSKVKDFMSSRPSTSGSSSELESKFYIGRSN 122
            P  R++  A   E P+G+V+VQF+      +V + MSSRPSTS   SE   +  + RS 
Sbjct: 274 APVTRSSTEASITEFPDGNVEVQFNSGLSYPRVSEIMSSRPSTSSIKSEASYRETLRRSE 333

Query: 123 SLRA 127
           S+RA
Sbjct: 334 SIRA 337

The following BLAST results are available for this feature:

BLAST of Lag0039583 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041674.1	7.2e-23	45.97	movement protein [Cucumis melo var. makuwa] >TYK06295.1 movement protein [Cucumi...	[more]
KAA0057417.1	9.5e-23	45.16	Enzymatic polyprotein [Cucumis melo var. makuwa] >TYK30116.1 Enzymatic polyprote...	[more]
KAA0056776.1	9.5e-23	45.97	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]
KAA0050445.1	1.2e-22	45.16	hypothetical protein E6C27_scaffold175G00510 [Cucumis melo var. makuwa]	[more]
KAA0059217.1	1.6e-22	45.97	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0039583 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039583.1	Lag0039583.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity