Lag0037476 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0037476
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein of unknown function (DUF1677)
Location	chr2: 6621124 .. 6623313 (+)
RNA-Seq Expression	Lag0037476
Synteny	Lag0037476

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTATGTATATATATATATGTGTGTGATAATCATTGCCAGCCCTTTTTGTAGCTTAATTCAATTGGGTTGTTATAGATTTAGAAGTTTCATTATTGACGTTTGTTCTAATTTAATCCTCCTATAATTTCAAGTTTTAATTTGATCTCTATGATTTAGCTTTACCTTACATATTATCTCTAAGGCATGCATGTCTTTCATTTTCCAACTTATTTTCTCATCTCTTTTCTTTCCTATTCAATTTGGATCAACTAGCTCTCTAAACTTAGAAACAAAAATCTTACATTTAGAGCCTCAAATATTGCAACATGCACAAAAACTACCTCTGAATTGAAATAGTTGTTACAGTCAAACTTTCAAATTAATTATAAGTTTGTTACGATTAAACCTAAATTCTTTATAACTGTTTTATGTCTTTTTCATATATCAGAATGATAGCTAAAAATTGATCCAAAAACCAAATTGTTTTAGTGGTTAGTGTTATAGTTAGTTTGCAACAATTTTATGACTCGAGGGTTGACCTTCCTTAATTTAATTTAATTTTTTTTGAAATAAAACCTCAATTTTATTAGAACGCCACAGGGGCAACAATATTACGGTCATTCTCGACCAAAGAAGAGCACCAAATCGGGACTTGATCTATCCAAGTCCCACTAGTTTTCATCGTTCTAGCCCGTTTAGCTAAACAATCCACTATTGAGTTACAACTCCTCGGAACATAAGTAAAACTACACTCCTCAAAATTCAGGCAGAGAGATTGGATTGCTTCCACACTGCTCCATACTGAAGATGATCCTTGAACAAATTTTACCGCTAAAACATTATCAGACTCCACAACGATTTTCTTTCAGCCTTTGTGGCAGACCAATTCGACTAACACAACCAACCAAATAAAAAACATTTCCTCAATGTTAGAGTAGAGTTGGTTTAACTTTTTAAGTGTTTAATTTTGAAAAAAAAAATTCTAGTGTTTTACAACCACTGAAAATGACTTATTAAAAAACAATATTGAGAAATAAACAATAAAGCAAATTTTTTAAGAAGAATTCTTAAAGTATACAATTATAACTTGTGTATAAAAACGAAATAATGTAACCAAACAAGTGAGGGTTTAAATTCTTACAATTTTTATACAAAACCATTTAAAAAATGCATCATTGAAAAACATTTAACTAAAAGGTATTCCAAACAAGCCGCAATAAATTTAAAACATGTCATGTATTTTATATGGGAGCGCCATGGAAATCTATTAGCTCATGAAGGAGCTAGGGTTTATAATCGGCTGTGGCGTTCAGAGGGATTTGGTTAGAAGATCAGGTGCCTTGAGTTGAGTTCTCAACTTAGCTGTCAACGTGAATGTAGGATAGCTCCCATTCACTTCTTTGTCAGTCCTTTTCTGTTTCCCATTAATATTGTGTACTTGCCATTACAAACTAAATTAAAAATCATTAAATCTTAATGACTCAGTCGAAATTTGAGATCATCTCCGAATCATAAAAACCAAATTTATATATCTTTCAAGAAATTATTTGATGAAACTGTCACAATATAACTAAAACCATAAAATAATTAAAGTACTTCACAGTTGTATCTAGTGGTTATTAGGATAGAGAGCATGCAAATTTTTTTAATCTACATCGAATAATGTTCATTAAAAGGGTAGTCATATTGTGATTAATTTTTCATATCTTTGAACAGAACGAGCAAAGGGTGATCATTCGAAAAGCGGTGTCGAATTTAAGCAGGGAGATTGAGAGGCACAAACTGAGCAACAAAGAATTAGAAGAAGAAATTACAATGAGCAGAGTGGAAGAAGAAGCTGAAATAGAGCTACAACAGGCTGAGTGCAGCTGCTGTGGGCTAAAGGAGGAATGCACAAAGCACTACATTTTAGATGTCCAAAAATCCTTTTCAGGGAAGTGGGTTTGTGGGCTTTGCTCTGAAGCTGTGAAAGAGAGAGTCTTGAGATTTCCCAACACAACCATTGACAAAGCTGTGGACTTTCACAGGGAGTTTTGTGACACTTTCAACAGCACCACAAGGCTCAACCCTAAACTTTCCTTGACCAGTTCCATGAGAAAGATTGCTAGAAAAAGTTTTGAGAAACGAAATTCTAGCAATTTGGGCTCTTCGAATAAGCTCTCTCGAAGCATTAGTTGTGATCCCAGAATTGGTCTCCAAGATTGA

mRNA sequence

ATGCAGAACGAGCAAAGGGTGATCATTCGAAAAGCGGTGTCGAATTTAAGCAGGGAGATTGAGAGGCACAAACTGAGCAACAAAGAATTAGAAGAAGAAATTACAATGAGCAGAGTGGAAGAAGAAGCTGAAATAGAGCTACAACAGGCTGAGTGCAGCTGCTGTGGGCTAAAGGAGGAATGCACAAAGCACTACATTTTAGATGTCCAAAAATCCTTTTCAGGGAAGTGGGTTTGTGGGCTTTGCTCTGAAGCTGTGAAAGAGAGAGTCTTGAGATTTCCCAACACAACCATTGACAAAGCTGTGGACTTTCACAGGGAGTTTTGTGACACTTTCAACAGCACCACAAGGCTCAACCCTAAACTTTCCTTGACCAGTTCCATGAGAAAGATTGCTAGAAAAAGTTTTGAGAAACGAAATTCTAGCAATTTGGGCTCTTCGAATAAGCTCTCTCGAAGCATTAGTTGTGATCCCAGAATTGGTCTCCAAGATTGA

Coding sequence (CDS)

ATGCAGAACGAGCAAAGGGTGATCATTCGAAAAGCGGTGTCGAATTTAAGCAGGGAGATTGAGAGGCACAAACTGAGCAACAAAGAATTAGAAGAAGAAATTACAATGAGCAGAGTGGAAGAAGAAGCTGAAATAGAGCTACAACAGGCTGAGTGCAGCTGCTGTGGGCTAAAGGAGGAATGCACAAAGCACTACATTTTAGATGTCCAAAAATCCTTTTCAGGGAAGTGGGTTTGTGGGCTTTGCTCTGAAGCTGTGAAAGAGAGAGTCTTGAGATTTCCCAACACAACCATTGACAAAGCTGTGGACTTTCACAGGGAGTTTTGTGACACTTTCAACAGCACCACAAGGCTCAACCCTAAACTTTCCTTGACCAGTTCCATGAGAAAGATTGCTAGAAAAAGTTTTGAGAAACGAAATTCTAGCAATTTGGGCTCTTCGAATAAGCTCTCTCGAAGCATTAGTTGTGATCCCAGAATTGGTCTCCAAGATTGA

Protein sequence

MQNEQRVIIRKAVSNLSREIERHKLSNKELEEEITMSRVEEEAEIELQQAECSCCGLKEECTKHYILDVQKSFSGKWVCGLCSEAVKERVLRFPNTTIDKAVDFHREFCDTFNSTTRLNPKLSLTSSMRKIARKSFEKRNSSNLGSSNKLSRSISCDPRIGLQD

Homology

[Close]

BLAST of Lag0037476 vs. NCBI nr
Match: XP_022976231.1 (uncharacterized protein LOC111476691 [Cucurbita maxima])

HSP 1 Score: 230.3 bits (586), Expect = 1.2e-56
Identity = 119/163 (73.01%), Postives = 142/163 (87.12%), Query Frame = 0


Query: 1   MQNEQRVIIRKAVSNLSREIERHKLSNKELEEEITMSRVEEEAEIELQQAECSCCGLKEE 60
           MQNEQ+V +R+AVS+LS EIERHKLS  E  EEI MSR+EEE E+ ++QAEC CCGLKEE
Sbjct: 18  MQNEQQVFLRRAVSDLSEEIERHKLSINEEVEEIKMSRIEEEEEVVIEQAECRCCGLKEE 77

Query: 61  CTKHYILDVQKSFSGKWVCGLCSEAVKERVLRFPNTTIDKAVDFHREFCDTFNSTTRLNP 120
           CTK YIL+VQ  FSGKWVCGLCSEAVKER L+FP+ +I +AV+FHREFCD FN+TTRLNP
Sbjct: 78  CTKPYILEVQTFFSGKWVCGLCSEAVKERALKFPSISIGQAVEFHREFCDAFNATTRLNP 137

Query: 121 KLSLTSSMRKIARKSFEKR--NSSNLG-SSNKLSRSISCDPRI 161
           KLSLT+SMR+IARKSFEKR  +S++ G SSN+LSRS+SCDP+I
Sbjct: 138 KLSLTTSMRRIARKSFEKRTHDSTDFGSSSNRLSRSVSCDPKI 180

[Close]

BLAST of Lag0037476 vs. NCBI nr
Match: XP_023534820.1 (uncharacterized protein LOC111796448 [Cucurbita pepo subsp. pepo] >XP_023535298.1 uncharacterized protein LOC111796774 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 225.3 bits (573), Expect = 3.8e-55
Identity = 119/165 (72.12%), Postives = 143/165 (86.67%), Query Frame = 0


Query: 1   MQNEQRVIIRKAVSNLSREIERHKLSNKELEEEITMSRVEEEAEIE--LQQAECSCCGLK 60
           MQNEQ+V +R+AVS+LS+EIERHKLS  E  EE+ MSR+EEE E E  ++QAEC CCGLK
Sbjct: 18  MQNEQQVFLRRAVSDLSKEIERHKLSINEEVEEMKMSRIEEEEEEEVVIEQAECRCCGLK 77

Query: 61  EECTKHYILDVQKSFSGKWVCGLCSEAVKERVLRFPNTTIDKAVDFHREFCDTFNSTTRL 120
           EECTK YIL+VQ  FSGKWVCGLCSEAVKER L+FP+ +I +AV+FHREFCD FN+TTRL
Sbjct: 78  EECTKPYILEVQTFFSGKWVCGLCSEAVKERALKFPDISIGQAVEFHREFCDAFNATTRL 137

Query: 121 NPKLSLTSSMRKIARKSFEKR--NSSNLG-SSNKLSRSISCDPRI 161
           NPKLSLT+SMR+IARKSFEKR  +S++ G SSN+LSRS+SCDP+I
Sbjct: 138 NPKLSLTTSMRRIARKSFEKRTHDSTDFGSSSNRLSRSVSCDPKI 182

[Close]

BLAST of Lag0037476 vs. NCBI nr
Match: XP_038899593.1 (uncharacterized protein LOC120086851 [Benincasa hispida])

HSP 1 Score: 223.4 bits (568), Expect = 1.4e-54
Identity = 125/176 (71.02%), Postives = 146/176 (82.95%), Query Frame = 0


Query: 2   QNEQRVIIRKAV-SNLSREIERHKLS-NKELEEE--ITMSR----VEEEAEIELQQAECS 61
           + EQR++IRKAV S+LS+EIE +KL  + E+EEE  I MS+    VEEE E E ++ ECS
Sbjct: 20  KKEQRMMIRKAVSSDLSKEIESYKLRISNEVEEEIKIMMSKSSLVVEEEEEEEEEEIECS 79

Query: 62  CCGLKEECTKHYILDVQKSFSGKWVCGLCSEAVKERVLRFPNTTIDKAVDFHREFCDTFN 121
           CCGLKEECTK YIL+VQKSFSG WVCGLCSEAVKER+ +FPNTTIDKA++FHREFCD+FN
Sbjct: 80  CCGLKEECTKSYILEVQKSFSGNWVCGLCSEAVKERLFKFPNTTIDKALNFHREFCDSFN 139

Query: 122 STTRLNPKLSLTSSMRKIARKSFEKRN-----SSNLGSSNKLSRSISCDPRIGLQD 165
           +TTRLNPKLSLT+SMRKIARKSFE R      SS+  + NKLSRSISCDPRIGLQD
Sbjct: 140 TTTRLNPKLSLTTSMRKIARKSFENRTNNLGPSSSSNNKNKLSRSISCDPRIGLQD 195

[Close]

BLAST of Lag0037476 vs. NCBI nr
Match: XP_022135903.1 (uncharacterized protein LOC111007738 [Momordica charantia])

HSP 1 Score: 223.0 bits (567), Expect = 1.9e-54
Identity = 121/168 (72.02%), Postives = 140/168 (83.33%), Query Frame = 0


Query: 1   MQNE-QRVIIRKAVSNLSREIERHKLSNKELEEEITMSRVEEEAEIELQQAECSCCGLKE 60
           MQNE Q+ +IRKAVS+LS+EIER  L NK   EE+  SRVEEE E+  +Q ECSCCGLKE
Sbjct: 1   MQNENQQRVIRKAVSDLSKEIERVNLRNKNEVEEMMRSRVEEEEEV--RQVECSCCGLKE 60

Query: 61  ECTKHYILDVQKSFSGKWVCGLCSEAVKERVLRFPNTTIDKAVDFHREFCDTFNSTTRLN 120
           ECT  YIL++Q+ F+GKWVCGLCSEAVKERVLRFPNT I++A++FHREF   FN+TTRLN
Sbjct: 61  ECTAAYILEIQRRFAGKWVCGLCSEAVKERVLRFPNTPINEAINFHREFSHAFNTTTRLN 120

Query: 121 PKLSLTSSMRKIARKSFEKRNS---SNLGSSNKLSRSISCDPRIGLQD 165
           PKLSLT+SMRKIARKSF+KRNS   S+ GSS KLSRSISCDPRI L D
Sbjct: 121 PKLSLTTSMRKIARKSFDKRNSSPDSDFGSSTKLSRSISCDPRIRLND 166

[Close]

BLAST of Lag0037476 vs. NCBI nr
Match: XP_022937189.1 (uncharacterized protein LOC111443561 [Cucurbita moschata])

HSP 1 Score: 222.2 bits (565), Expect = 3.2e-54
Identity = 117/164 (71.34%), Postives = 142/164 (86.59%), Query Frame = 0


Query: 1   MQNEQRVIIRKAVSNLSREIERHKLSNKELEEEITMSRV-EEEAEIELQQAECSCCGLKE 60
           MQNEQ+V + +AVS+LS+EIERHKLS  E  EE+ MSR+ EEE E+ ++QAEC CCGLKE
Sbjct: 18  MQNEQQVFLCRAVSDLSKEIERHKLSINEEVEEMKMSRIEEEEEEVVIEQAECRCCGLKE 77

Query: 61  ECTKHYILDVQKSFSGKWVCGLCSEAVKERVLRFPNTTIDKAVDFHREFCDTFNSTTRLN 120
           ECTK YIL+VQ  FSGKWVCGLCSEAVKER L+FP+ +I +AV+FHREFCD FN+TTRLN
Sbjct: 78  ECTKPYILEVQTFFSGKWVCGLCSEAVKERALKFPDISIGQAVEFHREFCDAFNATTRLN 137

Query: 121 PKLSLTSSMRKIARKSFEKR--NSSNLG-SSNKLSRSISCDPRI 161
           PKLSLT+SMR+IARKSFEKR  +S++ G SSN+LSRS+SCDP+I
Sbjct: 138 PKLSLTTSMRRIARKSFEKRTHDSTDFGSSSNRLSRSVSCDPKI 181

The following BLAST results are available for this feature:

BLAST of Lag0037476 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022976231.1	1.2e-56	73.01	uncharacterized protein LOC111476691 [Cucurbita maxima]	[more]
XP_023534820.1	3.8e-55	72.12	uncharacterized protein LOC111796448 [Cucurbita pepo subsp. pepo] >XP_023535298....	[more]
XP_038899593.1	1.4e-54	71.02	uncharacterized protein LOC120086851 [Benincasa hispida]	[more]
XP_022135903.1	1.9e-54	72.02	uncharacterized protein LOC111007738 [Momordica charantia]	[more]
XP_022937189.1	3.2e-54	71.34	uncharacterized protein LOC111443561 [Cucurbita moschata]	[more]

BLAST of Lag0037476 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 13..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..154
None	No IPR available	PANTHER	PTHR33108:SF14	OS01G0745000 PROTEIN	coord: 4..156
IPR012876	Protein of unknown function DUF1677, plant	PFAM	PF07911	DUF1677	coord: 48..134 e-value: 5.3E-33 score: 113.3
IPR012876	Protein of unknown function DUF1677, plant	PANTHER	PTHR33108	OS01G0745000 PROTEIN	coord: 4..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0037476.1	Lag0037476.1	mRNA