Lag0036679 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0036679
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	CP12 domain-containing protein
Location	chr2: 347954 .. 348334 (-)
RNA-Seq Expression	Lag0036679
Synteny	Lag0036679

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCGATCGCAGTTCCAGTGGTTGCCTCTCTGAGATCGTCTAGAGGGTTTCAGGAGAAAATAGCAATACCGTATCGGAGACTCAGCGGGAAGAATCAGGGTGTGAGAGCAATGGGCATGGCAAGATACAAATACAAAGGAACGCATATGAGAGAGAAGCATCTGACGGAACTGATCGAGAAGAAGGTGATGGAAGCGGAGGAGGTTTGCAAGGGAGACCACCAGACCTCAGACGAGTGCAAGGTGGCGTGGGACCAAGTGGAGGAGGTTAGCCAAGCCAAGGCCCATCTCCTGCGTAAACTTGAGACTCAAGATCCACTCGAGTATTTCTGTCGAGACAATCCTCAGCTTGACGAGTGTCAGATTTACGAGGAATAA

mRNA sequence

ATGGCTTCGATCGCAGTTCCAGTGGTTGCCTCTCTGAGATCGTCTAGAGGGTTTCAGGAGAAAATAGCAATACCGTATCGGAGACTCAGCGGGAAGAATCAGGGTGTGAGAGCAATGGGCATGGCAAGATACAAATACAAAGGAACGCATATGAGAGAGAAGCATCTGACGGAACTGATCGAGAAGAAGGTGATGGAAGCGGAGGAGGTTTGCAAGGGAGACCACCAGACCTCAGACGAGTGCAAGGTGGCGTGGGACCAAGTGGAGGAGGTTAGCCAAGCCAAGGCCCATCTCCTGCGTAAACTTGAGACTCAAGATCCACTCGAGTATTTCTGTCGAGACAATCCTCAGCTTGACGAGTGTCAGATTTACGAGGAATAA

Coding sequence (CDS)

ATGGCTTCGATCGCAGTTCCAGTGGTTGCCTCTCTGAGATCGTCTAGAGGGTTTCAGGAGAAAATAGCAATACCGTATCGGAGACTCAGCGGGAAGAATCAGGGTGTGAGAGCAATGGGCATGGCAAGATACAAATACAAAGGAACGCATATGAGAGAGAAGCATCTGACGGAACTGATCGAGAAGAAGGTGATGGAAGCGGAGGAGGTTTGCAAGGGAGACCACCAGACCTCAGACGAGTGCAAGGTGGCGTGGGACCAAGTGGAGGAGGTTAGCCAAGCCAAGGCCCATCTCCTGCGTAAACTTGAGACTCAAGATCCACTCGAGTATTTCTGTCGAGACAATCCTCAGCTTGACGAGTGTCAGATTTACGAGGAATAA

Protein sequence

MASIAVPVVASLRSSRGFQEKIAIPYRRLSGKNQGVRAMGMARYKYKGTHMREKHLTELIEKKVMEAEEVCKGDHQTSDECKVAWDQVEEVSQAKAHLLRKLETQDPLEYFCRDNPQLDECQIYEE

Homology

[Close]

BLAST of Lag0036679 vs. NCBI nr
Match: XP_022157376.1 (calvin cycle protein CP12-3, chloroplastic [Momordica charantia])

HSP 1 Score: 177.2 bits (448), Expect = 9.0e-41
Identity = 95/128 (74.22%), Postives = 108/128 (84.38%), Query Frame = 0


Query: 1   MASIAVPVVASLRSSRGFQEKIAIPYRRLSGKNQGVRAMGMA--RYKYKGTHMREKHLTE 60
           MASI  P VA+L+S  GF EK  +PY +LS K+Q VRAMGMA  +YKYKGT MREKHLTE
Sbjct: 1   MASIVAP-VAALKSCNGFLEK-KMPYLKLSDKSQPVRAMGMAKYKYKYKGTQMREKHLTE 60

Query: 61  LIEKKVMEAEEVCKGDHQTSDECKVAWDQVEEVSQAKAHLLRKLETQDPLEYFCRDNPQL 120
           +IEKKVMEA+EVC+GD +TSDECKVAWD VEE+SQAKAH L KL+ QDPLEYFCRDNP L
Sbjct: 61  MIEKKVMEAKEVCEGD-ETSDECKVAWDLVEELSQAKAHFLHKLQNQDPLEYFCRDNPDL 120

Query: 121 DECQIYEE 127
           DECQIY+E
Sbjct: 121 DECQIYQE 125

[Close]

BLAST of Lag0036679 vs. NCBI nr
Match: KAG7037981.1 (Calvin cycle protein CP12-3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167.9 bits (424), Expect = 5.5e-38
Identity = 91/122 (74.59%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 11  SLRSSRGFQEKIAIPYRRLSGKNQGV---RAM--GMARYKYKGTHMREKHLTELIEKKVM 70
           S+R S+G QEKIA     +  + QG    RAM   MA+YKYKGT MREK LTE+IEKKVM
Sbjct: 20  SVRPSKGLQEKIAYLGLSVGSRKQGYQRERAMTVSMAKYKYKGTRMREKLLTEMIEKKVM 79

Query: 71  EAEEVCKGDHQT-SDECKVAWDQVEEVSQAKAHLLRKLETQDPLEYFCRDNPQLDECQIY 127
           EA+EVCKGD  + SDECKVAWDQVEEVSQAKAHLLRKL+TQDPLEYFCRDNPQLDECQIY
Sbjct: 80  EAKEVCKGDETSGSDECKVAWDQVEEVSQAKAHLLRKLQTQDPLEYFCRDNPQLDECQIY 139

[Close]

BLAST of Lag0036679 vs. NCBI nr
Match: KAG6608664.1 (Calvin cycle protein CP12-3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.9 bits (424), Expect = 5.5e-38
Identity = 91/122 (74.59%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 11  SLRSSRGFQEKIAIPYRRLSGKNQGV---RAM--GMARYKYKGTHMREKHLTELIEKKVM 70
           S+R S+G QEKIA     +  + QG    RAM   MA+YKYKGT MREK LTE+IEKKVM
Sbjct: 22  SVRPSKGLQEKIAYLGLSVGSRKQGYQRERAMTVSMAKYKYKGTRMREKLLTEMIEKKVM 81

Query: 71  EAEEVCKGDHQT-SDECKVAWDQVEEVSQAKAHLLRKLETQDPLEYFCRDNPQLDECQIY 127
           EA+EVCKGD  + SDECKVAWDQVEEVSQAKAHLLRKL+TQDPLEYFCRDNPQLDECQIY
Sbjct: 82  EAKEVCKGDETSGSDECKVAWDQVEEVSQAKAHLLRKLQTQDPLEYFCRDNPQLDECQIY 141

[Close]

BLAST of Lag0036679 vs. NCBI nr
Match: XP_022941081.1 (calvin cycle protein CP12-3, chloroplastic [Cucurbita moschata])

HSP 1 Score: 167.9 bits (424), Expect = 5.5e-38
Identity = 91/122 (74.59%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 11  SLRSSRGFQEKIAIPYRRLSGKNQGV---RAM--GMARYKYKGTHMREKHLTELIEKKVM 70
           S+R S+G QEKIA     +  + QG    RAM   MA+YKYKGT MREK LTE+IEKKVM
Sbjct: 22  SVRPSKGLQEKIAYLGLSVGSRKQGYQRERAMTVSMAKYKYKGTRMREKLLTEMIEKKVM 81

Query: 71  EAEEVCKGDHQT-SDECKVAWDQVEEVSQAKAHLLRKLETQDPLEYFCRDNPQLDECQIY 127
           EA+EVCKGD  + SDECKVAWDQVEEVSQAKAHLLRKL+TQDPLEYFCRDNPQLDECQIY
Sbjct: 82  EAKEVCKGDETSGSDECKVAWDQVEEVSQAKAHLLRKLQTQDPLEYFCRDNPQLDECQIY 141

[Close]

BLAST of Lag0036679 vs. NCBI nr
Match: XP_023525595.1 (calvin cycle protein CP12-3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.0 bits (419), Expect = 2.1e-37
Identity = 90/122 (73.77%), Postives = 99/122 (81.15%), Query Frame = 0


Query: 11  SLRSSRGFQEKIAIPYRRLSGKNQGV---RAM--GMARYKYKGTHMREKHLTELIEKKVM 70
           S+R  +G QEKIA     +  + QG    RAM   MA+YKYKGT MREK LTE+IEKKVM
Sbjct: 20  SVRPCKGLQEKIAYLGLSVGSRKQGYQRERAMTVSMAKYKYKGTRMREKLLTEMIEKKVM 79

Query: 71  EAEEVCKGDHQT-SDECKVAWDQVEEVSQAKAHLLRKLETQDPLEYFCRDNPQLDECQIY 127
           EA+EVCKGD  + SDECKVAWDQVEEVSQAKAHLLRKL+TQDPLEYFCRDNPQLDECQIY
Sbjct: 80  EAKEVCKGDETSGSDECKVAWDQVEEVSQAKAHLLRKLQTQDPLEYFCRDNPQLDECQIY 139

[Close]

BLAST of Lag0036679 vs. ExPASy Swiss-Prot
Match: Q9C9K2 (Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP12-3 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-20
Identity = 52/87 (59.77%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 42  ARYKYKGTHMREKHLTELIEKKVMEAEEVCKGDHQTSDECKVAWDQVEEVSQAKAHLLRK 101
           A  KY GT MRE+ L+E+IE+KV EA EVC+ + + S+EC+VAWD+VEEVSQA+A L  K
Sbjct: 49  ATAKYMGTKMREEKLSEMIEEKVKEATEVCEAE-EMSEECRVAWDEVEEVSQARADLRIK 108

Query: 102 LE--TQDPLEYFCRDNPQLDECQIYEE 127
           L+   QDPLE FC++NP+ DEC+IYE+
Sbjct: 109 LKLLNQDPLESFCQENPETDECRIYED 134

[Close]

BLAST of Lag0036679 vs. ExPASy Swiss-Prot
Match: Q9LZP9 (Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP12-2 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-11
Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = 0


Query: 53  EKHLTELIEKKVMEAEEVCKGDHQTSDECKVAWDQVEEVSQAKAHL--LRKLETQDPLEY 112
           E  +++++EK + EA+E C GD   S EC  AWD+VEE+S A +H    +K +  DPLE 
Sbjct: 57  EGGISDVVEKSIKEAQETCAGD-PVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEE 116

Query: 113 FCRDNPQLDECQIYE 126
           +C+DNP+ +EC+ Y+
Sbjct: 117 YCKDNPETNECRTYD 130

[Close]

BLAST of Lag0036679 vs. ExPASy Swiss-Prot
Match: O22914 (Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP12-1 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.5e-11
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 53  EKHLTELIEKKVMEAEEVCKGDHQTSDECKVAWDQVEEVSQAKAHL--LRKLETQDPLEY 112
           E  ++E +EK + EA+E C  D   S EC  AWD+VEE+S A +H    +K    DPLE 
Sbjct: 50  EGEISEKVEKSIQEAKETC-ADDPVSGECVAAWDEVEELSAAASHARDKKKAGGSDPLEE 109

Query: 113 FCRDNPQLDECQIYE 126
           +C DNP+ DEC+ Y+
Sbjct: 110 YCNDNPETDECRTYD 123

[Close]

BLAST of Lag0036679 vs. ExPASy Swiss-Prot
Match: A6Q0K5 (Calvin cycle protein CP12, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CP12 PE=1 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 9.5e-09
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 56  LTELIEKKVMEAEEVC-KGDHQTSDECKVAWDQVEEVSQAKAH----LLRKLETQDPLEY 115
           L + ++  V EAE+ C KG   TS +C VAWD VEE+S A +H    +   +   DPLE 
Sbjct: 35  LNKKVQDAVKEAEDACAKG---TSADCAVAWDTVEELSAAVSHKKDAVKADVTLTDPLEA 94

Query: 116 FCRDNPQLDECQIYEE 127
           FC+D P  DEC++YE+
Sbjct: 95  FCKDAPDADECRVYED 107

The following BLAST results are available for this feature:

BLAST of Lag0036679 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157376.1	9.0e-41	74.22	calvin cycle protein CP12-3, chloroplastic [Momordica charantia]	[more]
KAG7037981.1	5.5e-38	74.59	Calvin cycle protein CP12-3, chloroplastic, partial [Cucurbita argyrosperma subs...	[more]
KAG6608664.1	5.5e-38	74.59	Calvin cycle protein CP12-3, chloroplastic, partial [Cucurbita argyrosperma subs...	[more]
XP_022941081.1	5.5e-38	74.59	calvin cycle protein CP12-3, chloroplastic [Cucurbita moschata]	[more]
XP_023525595.1	2.1e-37	73.77	calvin cycle protein CP12-3, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0036679 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C9K2	1.1e-20	59.77	Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP...	[more]
Q9LZP9	1.2e-11	44.00	Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP...	[more]
O22914	3.5e-11	45.33	Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP...	[more]
A6Q0K5	9.5e-09	44.74	Calvin cycle protein CP12, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003823	Domain of unknown function CP12	SMART	SM01093	CP12_2	coord: 56..126 e-value: 1.5E-14 score: 64.3
IPR003823	Domain of unknown function CP12	PFAM	PF02672	CP12	coord: 56..125 e-value: 5.5E-22 score: 78.2
IPR039314	Calvin cycle protein CP12-like	PANTHER	PTHR33921	CALVIN CYCLE PROTEIN CP12-2, CHLOROPLASTIC	coord: 31..126
None	No IPR available	PANTHER	PTHR33921:SF16	CALVIN CYCLE PROTEIN CP12-3, CHLOROPLASTIC	coord: 31..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0036679.1	Lag0036679.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0080153	negative regulation of reductive pentose-phosphate cycle
cellular_component	GO:0009507	chloroplast