Lag0028251 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0028251
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DUF1985 domain-containing protein
Location	chr8: 16387430 .. 16389654 (+)
RNA-Seq Expression	Lag0028251
Synteny	Lag0028251

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGTGGATGAAGGAACCCCTTCGAGGTCCAACATTTTCAATCAAATAGTTGGAAATGTTGGTAGGATGTTAAGTGCAATAGCCCCAACCAAGAGACAACTTTTTGGGGATGAGGAATTGATTGATGCTGAAGGGAAAAAGGTACATGAATTTTTTTAAAACAAACTTCTTTCAGCCCCAACATGGAATTTCCTTTCTAACCATACAACAAATGTAGGATGATTTGGATATAGAGGAGGTGGATTCAATAGAGACTCAAATAGTCTCGTATGAACAAAATAGATAGGTATTATTTGAAAAACCCTTAGATAGTCTTAACTAAATGAAATATTTGACTTATTTTTTGTTTCAAAAATAGTAAGAATATGCCAAGGGTGAAGATGAATTTTCGAACACCTCGGACAAGATAAATATTCTGGATGATCAAGACAAACGAATGGAAGATGTTTGTGAAGGAGGACAAGAGGAAGATGAACACACCGAAGTCTGGATGATGAGATGATCAATTTGAATAGGAAAAGGATGAATGAAATTGAAAAAAAAAAGGTAAATTGGTAGTTACTTTGTTATTAATGGTTATATATGCATTAATTAATCCTTATGTTGTTAAATGTAGGAAACACCACGTCGGAAGAAACAAAAAAACAAAAAGATATACATCGACACGGTTGAGAAATCAGGGAAAAGGGTATTTCAAAATCTAAATGTTACTTAATGTATTTAGTTGTATTTTATCGCACAACTTCTTATAAGTTGTATAACTTTATAGGTGACAAGACAAAACTCCAGTGCTCTATACACTGGAAAAGATGATCCTAAGGAGATGCTGAAAAAGAAGACTCATCCAACAAAAACTGTAAAAAAGGAAAACAAGAAGGTATGAATTCCTTACAACTTTATTTTACATGCTTTAAACACATACATAACACTAAACTTATTAGGATGAATTATTTGTGCAGGTTTCAAAGAAACAACAAGGAATAAAGGGACAAACAGAAGGAAAAAAAAGAGAAAAGATCGGAAGAGGGTACGTAGTTGGAAAAGACAGAACCTCAAAATACCAAGTATGAGAATTTTAAAGGCATTATTAACGTCAAATCTCGCTAGATGTATGAAATTATATTAGTGACGTCAAATATTGAATTTTGAACAGGATGCCCCACTACTATTGCCAAGAGAAAAATAGTCAAGATCACAAAAACTAAATTTTCATGGGTCTTTAGATGTACTAACACAGATTAAACAAAGACTTAAGAAAAAACACCTTAAAAAATTCAGAGAGAATTGCTTTGATTGGTTTCTTGACATTAATGTTAGTAGTTATCAGATCCAAATTCTGTACCATATAATTAGGAGACAATGTAGCCCAACAAAATCAGATGAGCTTTGGTTCAATTTCGAGGGAATTGTAGTTAAGTTTGGACTTATGGAGTTTGAGTTGATTACTGGTCTGAACTGTGGAGATGTTAGTGTTGTTGATTATTCCAAACTATCTGGTAGATTTCTGAATAAATATTTTGGGAATGAAAGATCGGTTAAGATATCCACAGTTCAAAAACTATTTATGGATGGAACAGTAAAGAAAAAGGACAATGGTCAAGCTTGCCAACCTGTACTTTCTTAGTAATCTTTAGCTTGGAAAGCATGAATGAACAGATGTAGAGATTGATCATATCATGTTATTGAATGATATGAACCAGTTTGAAAAAATCCCTTGGGGTTGGTGTCCTACGAAACCACCATTAAGTCTATTATAAATTCCATAAAAATCCTGGGGCTTCAGTAGCGGGGTTAACTGGATTCCCATATGTCTTATTGGTGTGGGCATACGAGTGTATCCCTTTACCCATAGGACCAAATAGATACTATGCGCGTTGTGTCAGTACAGGACTTCCAAAATGAGACGAGTGTATCCCTTTACCCACAGGACTTCAAAAATTGGAAATCAGACGTGCATCCAAAATGAAGGGACCTTGCACTAAAGATCTTTGAACATGAAGATGTATGTTACTTCTATACCTATTGACATGTTTCAATTCATATGAAAAATTATATACTGTGTATGTTATTTGTAAACACGTTATAAATACTATGTGCAGTTTTCACTCGGTCCTATGACTGTTGAGCAACTTTCTGATATGGATAAGGGGATAAATGAAGAGCCTGAGAATGTAGGGATTGAGAATGTTGGAGAGTGCTCGAAAAGAAATGAGGTAGAATAA

mRNA sequence

ATGAACGTGGATGAAGGAACCCCTTCGAGGTCCAACATTTTCAATCAAATAGTTGGAAATGTTGGTAGGATGTTAAGTGCAATAGCCCCAACCAAGAGACAACTTTTTGGGGATGAGGAATTGATTGATGCTGAAGGGAAAAAGGAAACACCACGTCGGAAGAAACAAAAAAACAAAAAGATATACATCGACACGGTTGAGAAATCAGGGAAAAGGGTGACAAGACAAAACTCCAGTGCTCTATACACTGGAAAAGATGATCCTAAGGAGATGCTGAAAAAGAAGACTCATCCAACAAAAACTGTAAAAAAGGAAAACAAGAAGGTTTCAAAGAAACAACAAGGAATAAAGGGACAAACAGAAGGAAAAAAAAGAGAAAAGATCGGAAGAGGTTATCAGATCCAAATTCTGTACCATATAATTAGGAGACAATGTAGCCCAACAAAATCAGATGAGCTTTGGTTCAATTTCGAGGGAATTGTAGTTAAGTTTGGACTTATGGAGTTTGAGTTGATTACTGGTCTGAACTGTGGAGATGTTAGTGTTGTTGATTATTCCAAACTATCTGGTAGATTTCTGAATAAATATTTTGGGAATGAAAGATCGGTTAAGATATCCACAGTTCAAAAACTATTTATGGATGGAACAGTAAAGAAAAAGGACAATGGTCAAGCTTGCCAACCTTTTTCACTCGGTCCTATGACTGTTGAGCAACTTTCTGATATGGATAAGGGGATAAATGAAGAGCCTGAGAATGTAGGGATTGAGAATGTTGGAGAGTGCTCGAAAAGAAATGAGGTAGAATAA

Coding sequence (CDS)

ATGAACGTGGATGAAGGAACCCCTTCGAGGTCCAACATTTTCAATCAAATAGTTGGAAATGTTGGTAGGATGTTAAGTGCAATAGCCCCAACCAAGAGACAACTTTTTGGGGATGAGGAATTGATTGATGCTGAAGGGAAAAAGGAAACACCACGTCGGAAGAAACAAAAAAACAAAAAGATATACATCGACACGGTTGAGAAATCAGGGAAAAGGGTGACAAGACAAAACTCCAGTGCTCTATACACTGGAAAAGATGATCCTAAGGAGATGCTGAAAAAGAAGACTCATCCAACAAAAACTGTAAAAAAGGAAAACAAGAAGGTTTCAAAGAAACAACAAGGAATAAAGGGACAAACAGAAGGAAAAAAAAGAGAAAAGATCGGAAGAGGTTATCAGATCCAAATTCTGTACCATATAATTAGGAGACAATGTAGCCCAACAAAATCAGATGAGCTTTGGTTCAATTTCGAGGGAATTGTAGTTAAGTTTGGACTTATGGAGTTTGAGTTGATTACTGGTCTGAACTGTGGAGATGTTAGTGTTGTTGATTATTCCAAACTATCTGGTAGATTTCTGAATAAATATTTTGGGAATGAAAGATCGGTTAAGATATCCACAGTTCAAAAACTATTTATGGATGGAACAGTAAAGAAAAAGGACAATGGTCAAGCTTGCCAACCTTTTTCACTCGGTCCTATGACTGTTGAGCAACTTTCTGATATGGATAAGGGGATAAATGAAGAGCCTGAGAATGTAGGGATTGAGAATGTTGGAGAGTGCTCGAAAAGAAATGAGGTAGAATAA

Protein sequence

MNVDEGTPSRSNIFNQIVGNVGRMLSAIAPTKRQLFGDEELIDAEGKKETPRRKKQKNKKIYIDTVEKSGKRVTRQNSSALYTGKDDPKEMLKKKTHPTKTVKKENKKVSKKQQGIKGQTEGKKREKIGRGYQIQILYHIIRRQCSPTKSDELWFNFEGIVVKFGLMEFELITGLNCGDVSVVDYSKLSGRFLNKYFGNERSVKISTVQKLFMDGTVKKKDNGQACQPFSLGPMTVEQLSDMDKGINEEPENVGIENVGECSKRNEVE

Homology

[Close]

BLAST of Lag0028251 vs. NCBI nr
Match: XP_038883715.1 (uncharacterized protein LOC120074618 isoform X1 [Benincasa hispida])

HSP 1 Score: 96.3 bits (238), Expect = 4.3e-16
Identity = 39/84 (46.43%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 132 YQIQILYHIIRRQCSPTKSDELWFNFEGIVVKFGLMEFELITGLNCGDVSVVDYSKL-SG 191
           +  Q+ YH++RRQC  T  +ELWFN EG + KFG+ EF LITGLNCG++  +D SK+  G
Sbjct: 621 FSSQLFYHLVRRQCCSTNRNELWFNLEGRIHKFGMKEFSLITGLNCGELPEIDMSKIQKG 680

Query: 192 RFLNKYFGNERSVKISTVQKLFMD 215
           +F  +YFG E+++K + + ++F +
Sbjct: 681 KFNKRYFGGEKTIKRTKLHEVFTE 704

[Close]

BLAST of Lag0028251 vs. NCBI nr
Match: XP_038883719.1 (uncharacterized protein LOC120074618 isoform X5 [Benincasa hispida])

HSP 1 Score: 96.3 bits (238), Expect = 4.3e-16
Identity = 39/84 (46.43%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 132 YQIQILYHIIRRQCSPTKSDELWFNFEGIVVKFGLMEFELITGLNCGDVSVVDYSKL-SG 191
           +  Q+ YH++RRQC  T  +ELWFN EG + KFG+ EF LITGLNCG++  +D SK+  G
Sbjct: 615 FSSQLFYHLVRRQCCSTNRNELWFNLEGRIHKFGMKEFSLITGLNCGELPEIDMSKIQKG 674

Query: 192 RFLNKYFGNERSVKISTVQKLFMD 215
           +F  +YFG E+++K + + ++F +
Sbjct: 675 KFNKRYFGGEKTIKRTKLHEVFTE 698

[Close]

BLAST of Lag0028251 vs. NCBI nr
Match: XP_038883717.1 (uncharacterized protein LOC120074618 isoform X3 [Benincasa hispida])

HSP 1 Score: 96.3 bits (238), Expect = 4.3e-16
Identity = 39/84 (46.43%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 132 YQIQILYHIIRRQCSPTKSDELWFNFEGIVVKFGLMEFELITGLNCGDVSVVDYSKL-SG 191
           +  Q+ YH++RRQC  T  +ELWFN EG + KFG+ EF LITGLNCG++  +D SK+  G
Sbjct: 619 FSSQLFYHLVRRQCCSTNRNELWFNLEGRIHKFGMKEFSLITGLNCGELPEIDMSKIQKG 678

Query: 192 RFLNKYFGNERSVKISTVQKLFMD 215
           +F  +YFG E+++K + + ++F +
Sbjct: 679 KFNKRYFGGEKTIKRTKLHEVFTE 702

[Close]

BLAST of Lag0028251 vs. NCBI nr
Match: XP_038883718.1 (uncharacterized protein LOC120074618 isoform X4 [Benincasa hispida])

HSP 1 Score: 96.3 bits (238), Expect = 4.3e-16
Identity = 39/84 (46.43%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 132 YQIQILYHIIRRQCSPTKSDELWFNFEGIVVKFGLMEFELITGLNCGDVSVVDYSKL-SG 191
           +  Q+ YH++RRQC  T  +ELWFN EG + KFG+ EF LITGLNCG++  +D SK+  G
Sbjct: 616 FSSQLFYHLVRRQCCSTNRNELWFNLEGRIHKFGMKEFSLITGLNCGELPEIDMSKIQKG 675

Query: 192 RFLNKYFGNERSVKISTVQKLFMD 215
           +F  +YFG E+++K + + ++F +
Sbjct: 676 KFNKRYFGGEKTIKRTKLHEVFTE 699

[Close]

BLAST of Lag0028251 vs. NCBI nr
Match: XP_038883716.1 (uncharacterized protein LOC120074618 isoform X2 [Benincasa hispida])

HSP 1 Score: 96.3 bits (238), Expect = 4.3e-16
Identity = 39/84 (46.43%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 132 YQIQILYHIIRRQCSPTKSDELWFNFEGIVVKFGLMEFELITGLNCGDVSVVDYSKL-SG 191
           +  Q+ YH++RRQC  T  +ELWFN EG + KFG+ EF LITGLNCG++  +D SK+  G
Sbjct: 620 FSSQLFYHLVRRQCCSTNRNELWFNLEGRIHKFGMKEFSLITGLNCGELPEIDMSKIQKG 679

Query: 192 RFLNKYFGNERSVKISTVQKLFMD 215
           +F  +YFG E+++K + + ++F +
Sbjct: 680 KFNKRYFGGEKTIKRTKLHEVFTE 703

[Close]

BLAST of Lag0028251 vs. ExPASy TrEMBL
Match: A0A0A0KI50 (TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G489950 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-15
Identity = 38/84 (45.24%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 132 YQIQILYHIIRRQCSPTKSDELWFNFEGIVVKFGLMEFELITGLNCGDVSVVDYSKL-SG 191
           +  Q+ YH+IRRQC     +ELWFN EG + KFG+ +F LITGLNCG++  +D SK+  G
Sbjct: 628 FSSQLFYHLIRRQCCSKNRNELWFNLEGRIHKFGMKDFALITGLNCGELPAIDMSKIQKG 687

Query: 192 RFLNKYFGNERSVKISTVQKLFMD 215
           +F  +YFG E++++ + + K+F +
Sbjct: 688 KFNKRYFGGEKTIRRAKLHKVFTE 711

[Close]

BLAST of Lag0028251 vs. ExPASy TrEMBL
Match: A0A5D3CNI7 (TF-B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005170 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.1e-15
Identity = 37/84 (44.05%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 132 YQIQILYHIIRRQCSPTKSDELWFNFEGIVVKFGLMEFELITGLNCGDVSVVDYSKL-SG 191
           +  Q+ YH+IRRQC      ELWFN EG + KFG+ +F LITGLNCG++  +D SK+  G
Sbjct: 683 FSSQLFYHLIRRQCCSKNRHELWFNLEGRIHKFGMKDFALITGLNCGELPAIDMSKIQKG 742

Query: 192 RFLNKYFGNERSVKISTVQKLFMD 215
           +F  +YFG E++++ + + ++F +
Sbjct: 743 KFNKRYFGGEKTIRRTKLHEVFTE 766

[Close]

BLAST of Lag0028251 vs. ExPASy TrEMBL
Match: A0A1S3B0L9 (uncharacterized protein LOC103484737 isoform X5 OS=Cucumis melo OX=3656 GN=LOC103484737 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.1e-15
Identity = 37/84 (44.05%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 132 YQIQILYHIIRRQCSPTKSDELWFNFEGIVVKFGLMEFELITGLNCGDVSVVDYSKL-SG 191
           +  Q+ YH+IRRQC      ELWFN EG + KFG+ +F LITGLNCG++  +D SK+  G
Sbjct: 591 FSSQLFYHLIRRQCCSKNRHELWFNLEGRIHKFGMKDFALITGLNCGELPAIDMSKIQKG 650

Query: 192 RFLNKYFGNERSVKISTVQKLFMD 215
           +F  +YFG E++++ + + ++F +
Sbjct: 651 KFNKRYFGGEKTIRRTKLHEVFTE 674

[Close]

BLAST of Lag0028251 vs. ExPASy TrEMBL
Match: A0A1S3B181 (uncharacterized protein LOC103484737 isoform X7 OS=Cucumis melo OX=3656 GN=LOC103484737 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.1e-15
Identity = 37/84 (44.05%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 132 YQIQILYHIIRRQCSPTKSDELWFNFEGIVVKFGLMEFELITGLNCGDVSVVDYSKL-SG 191
           +  Q+ YH+IRRQC      ELWFN EG + KFG+ +F LITGLNCG++  +D SK+  G
Sbjct: 589 FSSQLFYHLIRRQCCSKNRHELWFNLEGRIHKFGMKDFALITGLNCGELPAIDMSKIQKG 648

Query: 192 RFLNKYFGNERSVKISTVQKLFMD 215
           +F  +YFG E++++ + + ++F +
Sbjct: 649 KFNKRYFGGEKTIRRTKLHEVFTE 672

[Close]

BLAST of Lag0028251 vs. ExPASy TrEMBL
Match: A0A1S3B065 (uncharacterized protein LOC103484737 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103484737 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.1e-15
Identity = 37/84 (44.05%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 132 YQIQILYHIIRRQCSPTKSDELWFNFEGIVVKFGLMEFELITGLNCGDVSVVDYSKL-SG 191
           +  Q+ YH+IRRQC      ELWFN EG + KFG+ +F LITGLNCG++  +D SK+  G
Sbjct: 607 FSSQLFYHLIRRQCCSKNRHELWFNLEGRIHKFGMKDFALITGLNCGELPAIDMSKIQKG 666

Query: 192 RFLNKYFGNERSVKISTVQKLFMD 215
           +F  +YFG E++++ + + ++F +
Sbjct: 667 KFNKRYFGGEKTIRRTKLHEVFTE 690

[Close]

BLAST of Lag0028251 vs. TAIR 10
Match: AT1G31150.1 (Domain of unknown function (DUF1985) )

HSP 1 Score: 51.2 bits (121), Expect = 1.5e-06
Identity = 35/111 (31.53%), Postives = 58/111 (52.25%), Query Frame = 0


Query: 108 KVSKKQQGIKGQTEGKKRE-KIGR-GYQIQILYHIIRRQCSPTKSDELWFNFEGIVVKFG 167
           K S++ + IK    GK  E  + R  +  ++++ ++ RQ    K  ELWF F G  ++F 
Sbjct: 44  KGSEEWERIKSSQFGKLFEFPVARCSHSGKLIHGLLSRQVVTKKKHELWFVFGGHPIRFS 103

Query: 168 LMEFELITGLNCGDVSVVDYSK--LSGRFL---NKYFGNERSVKISTVQKL 212
           + EF ++TGL CG +   D  K     ++L   N+ FG +R V I  V ++
Sbjct: 104 IREFHIVTGLRCGKLPTEDEVKKHQDSKYLSVWNRLFGEKRMVTIGDVLEM 154

The following BLAST results are available for this feature:

BLAST of Lag0028251 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883715.1	4.3e-16	46.43	uncharacterized protein LOC120074618 isoform X1 [Benincasa hispida]	[more]
XP_038883719.1	4.3e-16	46.43	uncharacterized protein LOC120074618 isoform X5 [Benincasa hispida]	[more]
XP_038883717.1	4.3e-16	46.43	uncharacterized protein LOC120074618 isoform X3 [Benincasa hispida]	[more]
XP_038883718.1	4.3e-16	46.43	uncharacterized protein LOC120074618 isoform X4 [Benincasa hispida]	[more]
XP_038883716.1	4.3e-16	46.43	uncharacterized protein LOC120074618 isoform X2 [Benincasa hispida]	[more]

BLAST of Lag0028251 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0028251 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI50	1.0e-15	45.24	TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G489950 PE=4 ...	[more]
A0A5D3CNI7	5.1e-15	44.05	TF-B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3B0L9	5.1e-15	44.05	uncharacterized protein LOC103484737 isoform X5 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3B181	5.1e-15	44.05	uncharacterized protein LOC103484737 isoform X7 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3B065	5.1e-15	44.05	uncharacterized protein LOC103484737 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Lag0028251 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31150.1	1.5e-06	31.53	Domain of unknown function (DUF1985)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015410	Domain of unknown function DUF1985	PFAM	PF09331	DUF1985	coord: 143..221 e-value: 4.6E-14 score: 52.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 246..268
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0028251.1	Lag0028251.1	mRNA