Lag0027989 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0027989
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease H
Location	chr8: 9414196 .. 9414993 (+)
RNA-Seq Expression	Lag0027989
Synteny	Lag0027989

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCACTCAGATTAGGAGAGTCACTCGAAGGGCAGATGAACTAGCAGAAGATGCACGTATTCTCTCTAAAGTCATAGAACCGACACAGTCGAATAGCAAGAATGTGCTCAAGTTTCTGGGAAAGCTTCGTATACGTTTAGAGTATTGGGGGCAATTTTATTAACTTTTTACTTTATTTTATGTTTTTTTTAGATAGTTGAAATATCTTGTAATTCAATTTTGCACAAATTTTGCTAGTACATTGTTTTATCATTTTCCAATTTAATATCAAGACCATTTTTATTTTTATTTTTCTTTTCCTCTTCAATTTTTTAAATGTTTCGTTTTGTCTTTCTCTTTTCTTACACTAAAATCTCTTTTCATTAAAAATATAAACAGTCATAAGATAGCTCAGTCACCTCGAATCTACCGCGCCTACGTCACAAGATACACGACAAGGATCATGAAAGAGCAAAGTACTCAGCTGGAGAAAACGAGAAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCTTGGAGAAAAGCAAAATAGAAGCTGATAGTGCTCAGTCCAGCAATACAATGAATGACCCTCCAATATGGCAATCAACAGAGAGTACTACTCCAAAATATCATCCATTGTACAATATTCCAGTAGAGCAGCACCCATTTTCATTTTTCAAGAATGAGCAAGTGCATGTGCTCCATCAACCTGGATTTTCACTGCCTAAGGAGGCAGCTCCCAAGGTGACCATTACGGTTCCCAATTTAGATGATCCTGTAATCAGAAAAGAGCTAACGTGA

mRNA sequence

ATGCTCACTCAGATTAGGAGAGTCACTCGAAGGGCAGATGAACTAGCAGAAGATGCACGTATTCTCTCTAAAGTCATAGAACCGACACAGTCGAATAGCAAGAATGTGCTCAAGTTTCTGGGAAAGCTTCGTATACGTTTAGATCATAAGATAGCTCAGTCACCTCGAATCTACCGCGCCTACGTCACAAGATACACGACAAGGATCATGAAAGAGCAAAGTACTCAGCTGGAGAAAACGAGAAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCTTGGAGAAAAGCAAAATAGAAGCTGATAGTGCTCAGTCCAGCAATACAATGAATGACCCTCCAATATGGCAATCAACAGAGAGTACTACTCCAAAATATCATCCATTGTACAATATTCCAGTAGAGCAGCACCCATTTTCATTTTTCAAGAATGAGCAAGTGCATGTGCTCCATCAACCTGGATTTTCACTGCCTAAGGAGGCAGCTCCCAAGGTGACCATTACGGTTCCCAATTTAGATGATCCTGTAATCAGAAAAGAGCTAACGTGA

Coding sequence (CDS)

ATGCTCACTCAGATTAGGAGAGTCACTCGAAGGGCAGATGAACTAGCAGAAGATGCACGTATTCTCTCTAAAGTCATAGAACCGACACAGTCGAATAGCAAGAATGTGCTCAAGTTTCTGGGAAAGCTTCGTATACGTTTAGATCATAAGATAGCTCAGTCACCTCGAATCTACCGCGCCTACGTCACAAGATACACGACAAGGATCATGAAAGAGCAAAGTACTCAGCTGGAGAAAACGAGAAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCTTGGAGAAAAGCAAAATAGAAGCTGATAGTGCTCAGTCCAGCAATACAATGAATGACCCTCCAATATGGCAATCAACAGAGAGTACTACTCCAAAATATCATCCATTGTACAATATTCCAGTAGAGCAGCACCCATTTTCATTTTTCAAGAATGAGCAAGTGCATGTGCTCCATCAACCTGGATTTTCACTGCCTAAGGAGGCAGCTCCCAAGGTGACCATTACGGTTCCCAATTTAGATGATCCTGTAATCAGAAAAGAGCTAACGTGA

Protein sequence

MLTQIRRVTRRADELAEDARILSKVIEPTQSNSKNVLKFLGKLRIRLDHKIAQSPRIYRAYVTRYTTRIMKEQSTQLEKTRKDIEELREKMDAILVALEKSKIEADSAQSSNTMNDPPIWQSTESTTPKYHPLYNIPVEQHPFSFFKNEQVHVLHQPGFSLPKEAAPKVTITVPNLDDPVIRKELT

Homology

[Close]

BLAST of Lag0027989 vs. NCBI nr
Match: XP_022147190.1 (uncharacterized protein LOC111016201 [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-07
Identity = 50/108 (46.30%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 20  RILSKVIEPTQSNSKNVLKFLGKLRIRLDHKIAQSPRIYRAYVTRYTTRIMKE-QSTQLE 79
           RILS+ + P QS  +  L            KIA+S   +R Y TR   R+M E Q  + E
Sbjct: 443 RILSE-MSPNQSTQRKGL-----------FKIARSLAPHRTYRTRRRARLMMEDQKAEQE 502

Query: 80  KTRKDIEELREKMDAILVALEKSKIEADSAQSSNTMNDP------PIW 121
           KTRKDIEELREK+D IL+ALEK K  AD A SSN +++P      P+W
Sbjct: 503 KTRKDIEELREKLDVILLALEKGKSAADPATSSNPVHEPQETPPYPLW 538

[Close]

BLAST of Lag0027989 vs. NCBI nr
Match: XP_022157796.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia])

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-07
Identity = 41/96 (42.71%), Postives = 57/96 (59.38%), Query Frame = 0


Query: 70  MKEQSTQLEKTRKDIEELREKMDAILVALEKSKIEADSAQSSNTMND------------P 129
           M++Q  + EKTRKDIEELREK+D I + LEK K  AD A SSN +++            P
Sbjct: 1   MEDQKAEQEKTRKDIEELREKLDXIXLXLEKGKATADPATSSNPIHEPQETPPYPPGYGP 60

Query: 130 PIWQSTESTTPK---YHPLYNIPVEQHPFSFFKNEQ 151
           P+    E   P+   Y+PLY++P+ Q+P +F K  Q
Sbjct: 61  PLRPVAEGFMPQYTTYNPLYDVPIGQYPHTFVKGAQ 96

[Close]

BLAST of Lag0027989 vs. NCBI nr
Match: XP_022149382.1 (uncharacterized protein LOC111017812 [Momordica charantia])

HSP 1 Score: 62.0 bits (149), Expect = 6.3e-06
Identity = 47/117 (40.17%), Postives = 61/117 (52.14%), Query Frame = 0


Query: 70  MKEQSTQLEKTRKDIEELREKMDAILVALEKSKIEADSAQSSNTMN------------DP 129
           MK+Q  + EK RKDIEELREK+D IL+ALEK K  AD   SSN ++            DP
Sbjct: 1   MKDQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPLGYDP 60

Query: 130 PIWQSTE---STTPKYHPLYNIPVEQHPFSFFKNEQVHVLHQPGFSLPKEAAPKVTI 172
           P+    E        Y+PLY+I V Q+P  F K  Q  +     F  P++  P  T+
Sbjct: 61  PLRLVAEGFMQQNTTYNPLYDILVGQYPPPFVKGTQ-QIPTNIIFREPEQMMPPPTV 116

The following BLAST results are available for this feature:

BLAST of Lag0027989 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147190.1	1.1e-07	46.30	uncharacterized protein LOC111016201 [Momordica charantia]	[more]
XP_022157796.1	1.5e-07	42.71	LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]	[more]
XP_022149382.1	6.3e-06	40.17	uncharacterized protein LOC111017812 [Momordica charantia]	[more]

BLAST of Lag0027989 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 70..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0027989.1	Lag0027989.1	mRNA