Lag0030793 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0030793
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr11: 1441081 .. 1443263 (-)
RNA-Seq Expression	Lag0030793
Synteny	Lag0030793

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCAAGAAGTAGATTTTCCTCCAAGAATCTATCATGAATACCGAACAATGCTCCAAGAATTCAACAATAATCCCTTGTATAGAAGACAACAAGACGGGACGGATTCATCGAGAAGTAAAGACCTTGGAAAGATGGGAAACAAGGAGGAACCAAACGGTAACCTAATGGGGCAAGCTACCATCGAGAGAACTTATCAAGAACAAGATAAAACATCTCGGGAATTGGAAGAAAGGATGGGACAGCAACAAGAAAGACAAACAATGGAGCAAAGAATAGTTCATGAAACACATTTAGCTCCAAGAAAGTATCAAATAATGCATCAAGACTTCCACATCAATCCATTACATAATTGGCAGCAAGAATTCTTCGAGTGGAAGCCTTTAGAAACGCAAGAACACAAGGTAAAATATCATCAAGAAAGGCAAGAAAGGCAAATTTTTGTTCAAAGAACAATCCAAGAATGGGATACAGTCCAAAAATGGAATTTTTTGCCGTTTATTACGTAACTCGAGGTCGAGTTCTTTTTGGGAAGGAGATGTTTGATGTAGCCGTATACTTGTAATAACCCTTAGTCTTTTATTTTACTAAGTCATGTGCCAACCACATGCCTTGTAACTACTTTAGTTAGGATCCTTGCCTATTTAAGGGCAAGTGATTATCAATAAAGGGATATCATTTGTTATTATTCTAAAACAAGTCTACGGCTCCACCACTAGACCACTCCATAATTGGCTTCTCCATAAGAAAATTATTCCTATCGTTCCAAATTGCCCAGAAAGTTATACACGCTCTTTCAAAATCCTCAGTATTAAGTTGGTTAGCTAGCCTCATGAGTCGATCCGCAAAGTTATTAACAACTACAATATCTTTGTCAATGCGAGGAAACATTGTATCGCAAATGAGCTTGGACCATTTACAACCACATAACGCATGGTCAATACTTTCTGGTTTATTCAGACAAATATTACAAACAGTAGAGATATATCCATACCACGCCTCCAGAGACAGAAATTCACCGGCAAACATTCATGATAGGGCTTCCAAATGAATAATTTAATCTTCGATGGAATTTTTACTTTCCATAAATAATCCCACCATCGGCGTTGGAGAGGATTGCTCGTGGATTCCCTCCTCGCTATCAAATTCATTTCCAATTTGTATCCACTTTTAGTGGAGTACTCTCCATTCTTGGAAAAGTGCCAAATCCAAGTATCCTCCACATTTACTACACTAATAGGAATGGAACTAATCAACACTACATCCTCCTCCCCCACAACAGTTCTTAGTTTGTTCATATCCCATTTGTTTGAAGATGTTATAAAGTTAGAAACCAACACCTCTTCTTGGCCATCTGAACAGTTTAAAGCTAACCCTTTCTAAAAGACTGAACTATTCGCCTTAGATATGGTGTCAAAACTTAAGGTCTAATCTTCCATTAATTATTTATTTATTTTTTATAATGTCTCACATAGCCCATGGAAAATAGCAAGTGAGATGAGGAATGAAAACTCCAATGAGAAAAGGAGATAATGGAAATGTATTAAAAAGAAAACAAATGTAATAGGCACCATGTCAACTATGGATAAAAAGAAAATGAATCAAGAAAATAAGAGATGGAAGTAATTGAAAATGAAAGGGAAGCTATCAAGTGTCAATGGCGATTTGTACTTTTAGAAAAGCAAATAGTATAAGTTATAGGAGAATTATTCATTGTTATATCTTACTAAAGCAAATGCTTTTTTTTCTTTTCGGTCATTTTGTTTATTTAAGCGGACGTGAAATCGAAAACGAGATAGGGGATTTGAACATCTAACTTCTAGGTCGAAGATACAAGCTTTGTGACAATCAAGTTATGCTCTTTGTAACGCTCGCCTGGTGACGTCACCATACTTGTTTGAAACTAATTCTAAGAGTGAAGACTCTCCCCACAAACCAACACAGGGTCCTGAACTTCTCCAAAGTTCCTATGATTGAGCCACCGAAAATAACCTCGGGCGTCACATGTCCACCAGCTTCCGTCTTGGTTCGTCTCCGAACCACATCCTATTGGGAAAGATTCCGCTCTGATACCATCTGTAACGTTCCAGGCCCAAGATTCGGCATCTCACGACCCCGACATTCTCCTACATCCCTTGCGGCTTGGCGACGTCACCTCAGGATCTCTCTCATTCGGATGTGA

mRNA sequence

ATGGTCCAAGAAGTAGATTTTCCTCCAAGAATCTATCATGAATACCGAACAATGCTCCAAGAATTCAACAATAATCCCTTGTATAGAAGACAACAAGACGGGACGGATTCATCGAGAAGTAAAGACCTTGGAAAGATGGGAAACAAGGAGGAACCAAACGGTAACCTAATGGGGCAAGCTACCATCGAGAGAACTTATCAAGAACAAGATAAAACATCTCGGGAATTGGAAGAAAGGATGGGACAGCAACAAGAAAGACAAACAATGGAGCAAAGAATAGTTCATGAAACACATTTAGCTCCAAGAAAGTATCAAATAATGCATCAAGACTTCCACATCAATCCATTACATAATTGGCAGCAAGAATTCTTCGAGTGGAAGCCTTTAGAAACGCAAGAACACAAGACTCTCCCCACAAACCAACACAGGGTCCTGAACTTCTCCAAAGTTCCTATGATTGAGCCACCGAAAATAACCTCGGGCGTCACATGTCCACCAGCTTCCGTCTTGGTTCGTCTCCGAACCACATCCTATTGGGAAAGATTCCGCTCTGATACCATCTGTAACGTTCCAGGCCCAAGATTCGGCATCTCACGACCCCGACATTCTCCTACATCCCTTGCGGCTTGGCGACGTCACCTCAGGATCTCTCTCATTCGGATGTGA

Coding sequence (CDS)

ATGGTCCAAGAAGTAGATTTTCCTCCAAGAATCTATCATGAATACCGAACAATGCTCCAAGAATTCAACAATAATCCCTTGTATAGAAGACAACAAGACGGGACGGATTCATCGAGAAGTAAAGACCTTGGAAAGATGGGAAACAAGGAGGAACCAAACGGTAACCTAATGGGGCAAGCTACCATCGAGAGAACTTATCAAGAACAAGATAAAACATCTCGGGAATTGGAAGAAAGGATGGGACAGCAACAAGAAAGACAAACAATGGAGCAAAGAATAGTTCATGAAACACATTTAGCTCCAAGAAAGTATCAAATAATGCATCAAGACTTCCACATCAATCCATTACATAATTGGCAGCAAGAATTCTTCGAGTGGAAGCCTTTAGAAACGCAAGAACACAAGACTCTCCCCACAAACCAACACAGGGTCCTGAACTTCTCCAAAGTTCCTATGATTGAGCCACCGAAAATAACCTCGGGCGTCACATGTCCACCAGCTTCCGTCTTGGTTCGTCTCCGAACCACATCCTATTGGGAAAGATTCCGCTCTGATACCATCTGTAACGTTCCAGGCCCAAGATTCGGCATCTCACGACCCCGACATTCTCCTACATCCCTTGCGGCTTGGCGACGTCACCTCAGGATCTCTCTCATTCGGATGTGA

Protein sequence

MVQEVDFPPRIYHEYRTMLQEFNNNPLYRRQQDGTDSSRSKDLGKMGNKEEPNGNLMGQATIERTYQEQDKTSRELEERMGQQQERQTMEQRIVHETHLAPRKYQIMHQDFHINPLHNWQQEFFEWKPLETQEHKTLPTNQHRVLNFSKVPMIEPPKITSGVTCPPASVLVRLRTTSYWERFRSDTICNVPGPRFGISRPRHSPTSLAAWRRHLRISLIRM

Homology

[Close]

BLAST of Lag0030793 vs. NCBI nr
Match: BAT91927.1 (hypothetical protein VIGAN_07057100 [Vigna angularis var. angularis])

HSP 1 Score: 59.7 bits (143), Expect = 3.7e-05
Identity = 30/54 (55.56%), Postives = 31/54 (57.41%), Query Frame = 0


Query: 155 PPKITSGVTCPPASVLVRLRTTSYWERFRSDTICNVPGPRFGISRPRHSPTSLA 209
           P     GVTCPPA  LVR RTT YWER  SDTICNVP  R     P    T L+
Sbjct: 77  PSSPCPGVTCPPAFALVRPRTTPYWERLGSDTICNVPATRRDHRLPPQITTRLS 130

[Close]

BLAST of Lag0030793 vs. NCBI nr
Match: BAT88197.1 (hypothetical protein VIGAN_05164300 [Vigna angularis var. angularis])

HSP 1 Score: 56.6 bits (135), Expect = 3.1e-04
Identity = 28/55 (50.91%), Postives = 30/55 (54.55%), Query Frame = 0


Query: 155 PPKITSGVTCPPASVLVRLRTTSYWERFRSDTICNVPGPRFGISRPRHSPTSLAA 210
           P     GVTCPPA  LVR RTT YWER  SDTICN P        P    T L++
Sbjct: 69  PSSPCPGVTCPPAFALVRPRTTPYWERLGSDTICNAPATHRDHRLPPQITTRLSS 123

[Close]

BLAST of Lag0030793 vs. NCBI nr
Match: KOM53026.1 (hypothetical protein LR48_Vigan09g168500 [Vigna angularis])

HSP 1 Score: 56.6 bits (135), Expect = 3.1e-04
Identity = 27/48 (56.25%), Postives = 29/48 (60.42%), Query Frame = 0


Query: 162 VTCPPASVLVRLRTTSYWERFRSDTICNVPGPRFGISRPRHSPTSLAA 210
           VTCPPAS LVR RTT YWER  SDTICN P        P    T L++
Sbjct: 76  VTCPPASALVRPRTTPYWERLGSDTICNAPATHRDHRLPPQITTRLSS 123

[Close]

BLAST of Lag0030793 vs. ExPASy TrEMBL
Match: A0A0S3SGK4 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G057100 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-05
Identity = 30/54 (55.56%), Postives = 31/54 (57.41%), Query Frame = 0


Query: 155 PPKITSGVTCPPASVLVRLRTTSYWERFRSDTICNVPGPRFGISRPRHSPTSLA 209
           P     GVTCPPA  LVR RTT YWER  SDTICNVP  R     P    T L+
Sbjct: 77  PSSPCPGVTCPPAFALVRPRTTPYWERLGSDTICNVPATRRDHRLPPQITTRLS 130

[Close]

BLAST of Lag0030793 vs. ExPASy TrEMBL
Match: A0A0L9VD91 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g168500 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-04
Identity = 27/48 (56.25%), Postives = 29/48 (60.42%), Query Frame = 0


Query: 162 VTCPPASVLVRLRTTSYWERFRSDTICNVPGPRFGISRPRHSPTSLAA 210
           VTCPPAS LVR RTT YWER  SDTICN P        P    T L++
Sbjct: 76  VTCPPASALVRPRTTPYWERLGSDTICNAPATHRDHRLPPQITTRLSS 123

[Close]

BLAST of Lag0030793 vs. ExPASy TrEMBL
Match: A0A0S3S5W5 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G164300 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-04
Identity = 28/55 (50.91%), Postives = 30/55 (54.55%), Query Frame = 0


Query: 155 PPKITSGVTCPPASVLVRLRTTSYWERFRSDTICNVPGPRFGISRPRHSPTSLAA 210
           P     GVTCPPA  LVR RTT YWER  SDTICN P        P    T L++
Sbjct: 69  PSSPCPGVTCPPAFALVRPRTTPYWERLGSDTICNAPATHRDHRLPPQITTRLSS 123

[Close]

BLAST of Lag0030793 vs. ExPASy TrEMBL
Match: A0A0L9TKG5 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g051100 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.8e-04
Identity = 26/38 (68.42%), Postives = 26/38 (68.42%), Query Frame = 0


Query: 155 PPKITSGVTCPPASVLVRLRTTSYWERFRSDT-ICNVP 192
           PP    GVTCPPAS LVR RTT YWER  SDT  CN P
Sbjct: 138 PPSQCPGVTCPPASALVRPRTTPYWERLGSDTKQCNTP 175

The following BLAST results are available for this feature:

BLAST of Lag0030793 vs. NCBI nr


Match Name	E-value	Identity	Description
BAT91927.1	3.7e-05	55.56	hypothetical protein VIGAN_07057100 [Vigna angularis var. angularis]	[more]
BAT88197.1	3.1e-04	50.91	hypothetical protein VIGAN_05164300 [Vigna angularis var. angularis]	[more]
KOM53026.1	3.1e-04	56.25	hypothetical protein LR48_Vigan09g168500 [Vigna angularis]	[more]

BLAST of Lag0030793 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0030793 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0S3SGK4	1.8e-05	55.56	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G...	[more]
A0A0L9VD91	1.5e-04	56.25	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g168500 PE...	[more]
A0A0S3S5W5	1.5e-04	50.91	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G...	[more]
A0A0L9TKG5	9.8e-04	68.42	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g051100 PE...	[more]

BLAST of Lag0030793 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 66..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0030793.1	Lag0030793.1	mRNA