Lag0015451.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015451.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr12: 13287185 .. 13287577 (+)
Sequence length	393
RNA-Seq Expression	Lag0015451.1
Synteny	Lag0015451.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCTTCAAAGGGCAAAAGCCAAACTTCTTCTTCTTCAGCACCTCCACCTATGAGTGTTGATCTATACGCTATGAATTTAAGGTTTACTCCGGTAACCCGATCTAGAGCAAGAACGGGCGTCATACATCCAATGTCTCCAATGGAGTCATCCACTCCACCAAGGCCTTCGGCCAACCTAGTCCGTCCTTCTGGCGGAGTTGTTCAATTGAGACCTCCAGTCTCACTAGATTCAAAGATAGGGTCATCAACCCCATCACCTTCTTCTTATTCTCAGGTTGTTACACCAGAAAAGAGATTTTACCTCGTCTTGAGATCAAATCCTATTTTCAAAAATCTCTGGTTATCACTAAACCCATCATTGAACCAAATTTCAAGGTCTCAACCTTGA

mRNA sequence

ATGTCCTCTTCAAAGGGCAAAAGCCAAACTTCTTCTTCTTCAGCACCTCCACCTATGAGTGTTGATCTATACGCTATGAATTTAAGGTTTACTCCGGTAACCCGATCTAGAGCAAGAACGGGCGTCATACATCCAATGTCTCCAATGGAGTCATCCACTCCACCAAGGCCTTCGGCCAACCTAGTCCGTCCTTCTGGCGGAGTTGTTCAATTGAGACCTCCAGTCTCACTAGATTCAAAGATAGGGTCATCAACCCCATCACCTTCTTCTTATTCTCAGGTTGTTACACCAGAAAAGAGATTTTACCTCGTCTTGAGATCAAATCCTATTTTCAAAAATCTCTGGTTATCACTAAACCCATCATTGAACCAAATTTCAAGGTCTCAACCTTGA

Coding sequence (CDS)

ATGTCCTCTTCAAAGGGCAAAAGCCAAACTTCTTCTTCTTCAGCACCTCCACCTATGAGTGTTGATCTATACGCTATGAATTTAAGGTTTACTCCGGTAACCCGATCTAGAGCAAGAACGGGCGTCATACATCCAATGTCTCCAATGGAGTCATCCACTCCACCAAGGCCTTCGGCCAACCTAGTCCGTCCTTCTGGCGGAGTTGTTCAATTGAGACCTCCAGTCTCACTAGATTCAAAGATAGGGTCATCAACCCCATCACCTTCTTCTTATTCTCAGGTTGTTACACCAGAAAAGAGATTTTACCTCGTCTTGAGATCAAATCCTATTTTCAAAAATCTCTGGTTATCACTAAACCCATCATTGAACCAAATTTCAAGGTCTCAACCTTGA

Protein sequence

MSSSKGKSQTSSSSAPPPMSVDLYAMNLRFTPVTRSRARTGVIHPMSPMESSTPPRPSANLVRPSGGVVQLRPPVSLDSKIGSSTPSPSSYSQVVTPEKRFYLVLRSNPIFKNLWLSLNPSLNQISRSQP

Homology

[Close]

BLAST of Lag0015451.1 vs. NCBI nr
Match: KAA0032939.1 (hypothetical protein E6C27_scaffold269G00120 [Cucumis melo var. makuwa] >TYK22024.1 hypothetical protein E5676_scaffold482G00650 [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 4.2e-25
Identity = 74/115 (64.35%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 2   SSSKGKSQTSSSSAPPPMSVDLYAMNLRFTPVTRSRARTGVIHPMSPMESSTPPRPSANL 61
           SS +    +SS+SAP PMS D YAM+LRFT VTRSR+R+ VI   SP ESSTPPRPSANL
Sbjct: 16  SSKRNSPSSSSNSAPSPMSADQYAMDLRFTIVTRSRSRSFVIRIGSPTESSTPPRPSANL 75

Query: 62  VRPSGGVVQLRPPVSLDSKIGSSTPSPSSYSQVVTPEKRFYLVLRSNPIFKNLWL 117
           +RPSG VVQ+RPP S  S   SSTP P++YSQ VTP KRF   L+SN IFK+L L
Sbjct: 76  IRPSGEVVQMRPPASPFSNRESSTP-PTTYSQAVTPNKRFVPNLKSNLIFKSLSL 129

[Close]

BLAST of Lag0015451.1 vs. NCBI nr
Match: KAA0056175.1 (hypothetical protein E6C27_scaffold697G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 8.2e-21
Identity = 65/101 (64.36%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 2   SSSKGKSQTSSS-SAPPPMSVDLYAMNLRFTPVTRSRARTGVIHPMSPMESSTPPRPSAN 61
           +SSKG   +SSS SA  PM+ D YAM+L FT VTRSR+R+  I   SP ESSTPPRP AN
Sbjct: 15  TSSKGNHPSSSSNSASSPMNSDQYAMDLEFTTVTRSRSRSSSIRTGSPTESSTPPRPLAN 74

Query: 62  LVRPSGGVVQLRPPVSLDSKIGSSTPSPSSYSQVVTPEKRF 102
           L+RPSGGVVQ+RPP S  S   SSTP P++YSQ VTP+KRF
Sbjct: 75  LIRPSGGVVQMRPPTSPSSNRESSTP-PTTYSQAVTPDKRF 114

[Close]

BLAST of Lag0015451.1 vs. NCBI nr
Match: KAA0049709.1 (hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-20
Identity = 64/104 (61.54%), Postives = 78/104 (75.00%), Query Frame = 0


Query: 2   SSSKG-KSQTSSSSAPPPMSVDLYAMNLRFTPVTRSRARTGVIHPMSPMESSTPPRPSAN 61
           +SSKG +  +SS+S P PMS D YAM+L FT VTRSR+R+  I   SP ESSTPP+PS N
Sbjct: 15  TSSKGNRPSSSSNSTPSPMSADQYAMDLGFTTVTRSRSRSSSIRIGSPTESSTPPKPSTN 74

Query: 62  LVRPSGGVVQLRPPVSLDSKIGSSTPSPSSYSQVVTPEKRFYLV 105
           L+RPSGGVVQ+R PVS  S   SSTP P++YSQ VTP+KR  L+
Sbjct: 75  LIRPSGGVVQMRSPVSPSSNRKSSTP-PTTYSQAVTPDKRSKLL 117

[Close]

BLAST of Lag0015451.1 vs. NCBI nr
Match: TYK11076.1 (hypothetical protein E5676_scaffold73G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 5.3e-20
Identity = 63/101 (62.38%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 2   SSSKG-KSQTSSSSAPPPMSVDLYAMNLRFTPVTRSRARTGVIHPMSPMESSTPPRPSAN 61
           +SSKG +  +SS+SAP PMS D Y M+L FT V RSR+R+  I   SP ESSTPPRP AN
Sbjct: 15  TSSKGNRPSSSSNSAPSPMSADQYEMDLGFTTVIRSRSRSSSIRTESPTESSTPPRPLAN 74

Query: 62  LVRPSGGVVQLRPPVSLDSKIGSSTPSPSSYSQVVTPEKRF 102
           L+RPSG VVQ+RPP S  S   SSTP P++YSQ VTP+KRF
Sbjct: 75  LIRPSGRVVQMRPPASPSSNRESSTP-PTTYSQAVTPDKRF 114

[Close]

BLAST of Lag0015451.1 vs. NCBI nr
Match: KAA0026217.1 (hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa] >TYK30739.1 hypothetical protein E5676_scaffold343G00750 [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 5.9e-19
Identity = 63/101 (62.38%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 2   SSSKG-KSQTSSSSAPPPMSVDLYAMNLRFTPVTRSRARTGVIHPMSPMESSTPPRPSAN 61
           +SSKG +  +SS+SAP PMS D YAM+L FT VTRSR+R   I    P ESSTPPRPSAN
Sbjct: 15  TSSKGNRLSSSSNSAPSPMSADQYAMDLGFTIVTRSRSRLSGIGIGFPTESSTPPRPSAN 74

Query: 62  LVRPSGGVVQLRPPVSLDSKIGSSTPSPSSYSQVVTPEKRF 102
           L+RP G VVQ++PP S  S   SSTP P++YSQ VTP+KRF
Sbjct: 75  LIRPFGRVVQMKPPASPSSNRKSSTP-PTTYSQAVTPDKRF 114

The following BLAST results are available for this feature:

BLAST of Lag0015451.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032939.1	4.2e-25	64.35	hypothetical protein E6C27_scaffold269G00120 [Cucumis melo var. makuwa] >TYK2202...	[more]
KAA0056175.1	8.2e-21	64.36	hypothetical protein E6C27_scaffold697G00720 [Cucumis melo var. makuwa]	[more]
KAA0049709.1	3.1e-20	61.54	hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa]	[more]
TYK11076.1	5.3e-20	62.38	hypothetical protein E5676_scaffold73G00620 [Cucumis melo var. makuwa]	[more]
KAA0026217.1	5.9e-19	62.38	hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa] >TYK3073...	[more]

BLAST of Lag0015451.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0015451	Lag0015451	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0015451.1.exon1	Lag0015451.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0015451.1	cds.Lag0015451.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0015451.1	Lag0015451.1-protein	polypeptide