| ID | Project title | Project description | Reference genome | Sample list |
| P01 | Watermelon resequencing (SNP v3) | Genome resequencing was performed for a total of 547 watermelon accessions, including 243 cultivars, 88 landraces, 18 Citrullus lanatus var. cordophanus, 31 C. mucosospermus, 131 C. amarus and 36 C. colocynthis accessions. SNPs were called and biallelic SNPs with minor allele frequency > 0.01 were kept. | Watermelon 97103 genome (v2.5) | Download |
| P02 | Watermelon resequencing (indel v3) | Genome resequencing was performed for a total of 547 watermelon accessions, including 243 cultivars, 88 landraces, 18 Citrullus lanatus var. cordophanus, 31 C. mucosospermus, 131 C. amarus and 36 C. colocynthis accessions. Small indels were called and biallelic indels with minor allele frequency > 0.01 were kept. | Watermelon 97103 genome (v2.5) | Download |
| P03 | Watermelon GBS SNPs | Genotyping-by-sequencing was performed for a total of 1,365 watermelon accessions, including 1,211 Citrullus lanatus, 52 C. mucosospermus and 102 C. amarus accessions. SNPs were called and biallelic SNPs with minor allele frequency > 0.01 were kept. | Charleston Gray genome (v2.5) | Download |
| P04 | Cucumber core resequencing (SNP) | Genome resequencing was performed for the cucumber core collection comprising a total of 388 accessions. SNPs were called and biallelic SNPs with minor allele frequency > 0.01 were kept. | Gy14 genome (v2.1) | Download |
| P05 | Cucumber core resequencing (indel) | Genome resequencing was performed for the cucumber core collection comprising a total of 388 accessions. Indels were called and biallelic indels with minor allele frequency > 0.01 were kept. | Gy14 genome (v2.1) | Download |
| P06 | Cucumber GBS SNPs | Genotyping-by-sequencing was performed for a total of 1,234 cucumber accessions and three other Cucumis accessions used as the outgroup. SNPs were called and biallelic SNPs with minor allele frequency > 0.01 were kept | Gy14 genome (v2.1) | Download |
| P07 | Melon GBS SNPs | Genotyping-by-sequencing was performed for a total of 2,083 melon accessions. SNPs were called and biallelic SNPs with minor allele frequency > 0.01 were kept | DHL92 genome (v4) | Download |
| P08 | Cucurbita pepo GBS SNPs | Genotyping-by-sequencing was performed for a total of 830 Cucurbita pepo accessions. SNPs were called and biallelic SNPs with minor allele frequency > 0.01 were kept. | C. pepo MU-CU-16 genome (v4.1) | Download |
| P09 | Cucurbita maxima GBS SNPs | Genotyping-by-sequencing was performed for a total of 372 Cucurbita maxima accessions. SNPs were called and biallelic SNPs with minor allele frequency > 0.01 were kept. | C. maxima Rimu genome (v1.1) | Download |
| P10 | Cucurbita moschata GBS SNPs | Genotyping-by-sequencing was performed for a total of 314 Cucurbita moschata accessions. SNPs were called and biallelic SNPs with minor allele frequency > 0.01 were kept. | C. moschata Rifu genome (v1) | Download |
| P11 | Squash core resequencing (SNP) | Genome resequencing was performed for the squash core collection comprising a total of 206 accessions. SNPs were called and biallelic SNPs with minor allele frequency > 0.01 were kept. | MU‐CU‐16 genome (v4.1) | Download |
| P12 | Squash core resequencing (indel) | Genome resequencing was performed for the squash core collection comprising a total of 206 accessions. Indels were called and biallelic indels with minor allele frequency > 0.01 were kept. | MU‐CU‐16 genome (v4.1) | Download |
| P13 | Bottle gourd resequencing (SNP) | Genome resequencing was performed for a total of 197 bottle gourd accessions. SNPs were called and biallelic SNPs with minor allele frequency > 0.01 were kept. | USVL1VR-Ls genome (v1) | Download |
| P14 | Bottle gourd resequencing (indel) | Genome resequencing was performed for a total of 197 bottle gourd accessions. Indels were called and biallelic indels with minor allele frequency > 0.01 were kept. | USVL1VR-Ls genome (v1) | Download |
