Sed0009487 (gene) Chayote v1

Overview


Name	Sed0009487
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DNA ligase
Location	LG13: 24799508 .. 24799846 (-)
RNA-Seq Expression	Sed0009487
Synteny	Sed0009487

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAACGATCCATTTTCATTCACTCACAAACTCAAATCCTCAATCCGTTGTTTCCATTTCAATCACAGCGATTTTTCCGAAAGCGAAGCCGATGAATCTTCTCCACGAACTCCTAAATCGCCTCTCAAATCCATGGCCGCCGCCGCCGCAGAGTGCCGGAACCTCGTCGCTAAGATCGGCCGGAGTCGCCGCCGGTACCACCACTCCGCCGATTTCCGATACGATCCTTCCAGCTATGCGCTTAATTTCGAGGACGATCGAGTTCGCGATGATGATTATGAGTTTCCGATTAGGGATTTCGCTTCGAGGTTGCCGGCGTCTCCGCCGTCTACATGA

mRNA sequence

ATGTTGAACGATCCATTTTCATTCACTCACAAACTCAAATCCTCAATCCGTTGTTTCCATTTCAATCACAGCGATTTTTCCGAAAGCGAAGCCGATGAATCTTCTCCACGAACTCCTAAATCGCCTCTCAAATCCATGGCCGCCGCCGCCGCAGAGTGCCGGAACCTCGTCGCTAAGATCGGCCGGAGTCGCCGCCGGTACCACCACTCCGCCGATTTCCGATACGATCCTTCCAGCTATGCGCTTAATTTCGAGGACGATCGAGTTCGCGATGATGATTATGAGTTTCCGATTAGGGATTTCGCTTCGAGGTTGCCGGCGTCTCCGCCGTCTACATGA

Coding sequence (CDS)

ATGTTGAACGATCCATTTTCATTCACTCACAAACTCAAATCCTCAATCCGTTGTTTCCATTTCAATCACAGCGATTTTTCCGAAAGCGAAGCCGATGAATCTTCTCCACGAACTCCTAAATCGCCTCTCAAATCCATGGCCGCCGCCGCCGCAGAGTGCCGGAACCTCGTCGCTAAGATCGGCCGGAGTCGCCGCCGGTACCACCACTCCGCCGATTTCCGATACGATCCTTCCAGCTATGCGCTTAATTTCGAGGACGATCGAGTTCGCGATGATGATTATGAGTTTCCGATTAGGGATTTCGCTTCGAGGTTGCCGGCGTCTCCGCCGTCTACATGA

Protein sequence

MLNDPFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAECRNLVAKIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDYEFPIRDFASRLPASPPST

Homology

[Close]

BLAST of Sed0009487 vs. NCBI nr
Match: XP_022981208.1 (uncharacterized protein LOC111480417 [Cucurbita maxima])

HSP 1 Score: 169.9 bits (429), Expect = 1.3e-38
Identity = 93/118 (78.81%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 1   MLND--PFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CR 60
           MLN+  PFSFT KLKSSIRCF  +HSDF ESE D+SSPRTP+SPLKSMAA   E    CR
Sbjct: 2   MLNEYHPFSFTRKLKSSIRCFRRDHSDFFESE-DDSSPRTPRSPLKSMAAEFPEIRGMCR 61

Query: 61  NLVAKIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDYEFPIRDFASRLPASPPST 113
           NLVA+IGR RRRYHHSADFRYDPSSYALNFED++VRDDD EFPIRDFASRLPASPP++
Sbjct: 62  NLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDD-EFPIRDFASRLPASPPTS 117

[Close]

BLAST of Sed0009487 vs. NCBI nr
Match: XP_023523424.1 (uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 167.9 bits (424), Expect = 4.9e-38
Identity = 92/118 (77.97%), Postives = 101/118 (85.59%), Query Frame = 0


Query: 1   MLND--PFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CR 60
           MLND  PFSFT KLKSSI CF  +H DF E+E D+SSPRTP+SPLKSMAA   E    CR
Sbjct: 1   MLNDYHPFSFTRKLKSSILCFRRDHGDFLENE-DDSSPRTPRSPLKSMAAEFPELRGMCR 60

Query: 61  NLVAKIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDYEFPIRDFASRLPASPPST 113
           NLVA+IGRSRRRYHHSADFRYDPSSYALNFED++VRDDD EFPIRDFASRLPASPP++
Sbjct: 61  NLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD-EFPIRDFASRLPASPPTS 116

[Close]

BLAST of Sed0009487 vs. NCBI nr
Match: KAG7031776.1 (hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167.2 bits (422), Expect = 8.3e-38
Identity = 92/118 (77.97%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MLND--PFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CR 60
           MLND  PFSFT KLKSSI CF  +H DF E+E D SSPRTP+SPLKSMAA   E    CR
Sbjct: 1   MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGD-SSPRTPRSPLKSMAAEFPELRGMCR 60

Query: 61  NLVAKIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDYEFPIRDFASRLPASPPST 113
           NLVA+IGRSRRRYHHSADFRYDPSSYALNFED++VRDDD EFPIRDFASRLPASPP++
Sbjct: 61  NLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD-EFPIRDFASRLPASPPTS 116

[Close]

BLAST of Sed0009487 vs. NCBI nr
Match: XP_022940408.1 (uncharacterized protein LOC111446022 [Cucurbita moschata] >KAG6608139.1 hypothetical protein SDJN03_01481, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.2 bits (422), Expect = 8.3e-38
Identity = 92/118 (77.97%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MLND--PFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CR 60
           MLND  PFSFT KLKSSI CF  +H DF E+E D SSPRTP+SPLKSMAA   E    CR
Sbjct: 2   MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGD-SSPRTPRSPLKSMAAEFPELRGMCR 61

Query: 61  NLVAKIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDYEFPIRDFASRLPASPPST 113
           NLVA+IGRSRRRYHHSADFRYDPSSYALNFED++VRDDD EFPIRDFASRLPASPP++
Sbjct: 62  NLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD-EFPIRDFASRLPASPPTS 117

[Close]

BLAST of Sed0009487 vs. NCBI nr
Match: XP_022138148.1 (uncharacterized protein LOC111009386 [Momordica charantia])

HSP 1 Score: 147.9 bits (372), Expect = 5.2e-32
Identity = 80/114 (70.18%), Postives = 91/114 (79.82%), Query Frame = 0


Query: 3   NDPFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CRNLVA 62
           + PFSFTHKLKSSI CF  +H D  + E DE+S R+P+SPLKS A+   E    CRNLVA
Sbjct: 8   SSPFSFTHKLKSSILCFRADHGDLGDHE-DEASLRSPRSPLKSTASEHTELRGMCRNLVA 67

Query: 63  KIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDYEFPIRDFASRLPASPPST 113
           +IGRSRRRYHHSADFRYDPSSYALNFED+  R DD +FPIRDFASRLPASP S+
Sbjct: 68  RIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDD-DFPIRDFASRLPASPHSS 119

[Close]

BLAST of Sed0009487 vs. ExPASy TrEMBL
Match: A0A6J1J1H3 (uncharacterized protein LOC111480417 OS=Cucurbita maxima OX=3661 GN=LOC111480417 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 6.2e-39
Identity = 93/118 (78.81%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 1   MLND--PFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CR 60
           MLN+  PFSFT KLKSSIRCF  +HSDF ESE D+SSPRTP+SPLKSMAA   E    CR
Sbjct: 2   MLNEYHPFSFTRKLKSSIRCFRRDHSDFFESE-DDSSPRTPRSPLKSMAAEFPEIRGMCR 61

Query: 61  NLVAKIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDYEFPIRDFASRLPASPPST 113
           NLVA+IGR RRRYHHSADFRYDPSSYALNFED++VRDDD EFPIRDFASRLPASPP++
Sbjct: 62  NLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDD-EFPIRDFASRLPASPPTS 117

[Close]

BLAST of Sed0009487 vs. ExPASy TrEMBL
Match: A0A6J1FP70 (uncharacterized protein LOC111446022 OS=Cucurbita moschata OX=3662 GN=LOC111446022 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.0e-38
Identity = 92/118 (77.97%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MLND--PFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CR 60
           MLND  PFSFT KLKSSI CF  +H DF E+E D SSPRTP+SPLKSMAA   E    CR
Sbjct: 2   MLNDYHPFSFTRKLKSSILCFRRDHGDFLENEGD-SSPRTPRSPLKSMAAEFPELRGMCR 61

Query: 61  NLVAKIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDYEFPIRDFASRLPASPPST 113
           NLVA+IGRSRRRYHHSADFRYDPSSYALNFED++VRDDD EFPIRDFASRLPASPP++
Sbjct: 62  NLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDD-EFPIRDFASRLPASPPTS 117

[Close]

BLAST of Sed0009487 vs. ExPASy TrEMBL
Match: A0A6J1CC83 (uncharacterized protein LOC111009386 OS=Momordica charantia OX=3673 GN=LOC111009386 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.5e-32
Identity = 80/114 (70.18%), Postives = 91/114 (79.82%), Query Frame = 0


Query: 3   NDPFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CRNLVA 62
           + PFSFTHKLKSSI CF  +H D  + E DE+S R+P+SPLKS A+   E    CRNLVA
Sbjct: 8   SSPFSFTHKLKSSILCFRADHGDLGDHE-DEASLRSPRSPLKSTASEHTELRGMCRNLVA 67

Query: 63  KIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDYEFPIRDFASRLPASPPST 113
           +IGRSRRRYHHSADFRYDPSSYALNFED+  R DD +FPIRDFASRLPASP S+
Sbjct: 68  RIGRSRRRYHHSADFRYDPSSYALNFEDEHARYDD-DFPIRDFASRLPASPHSS 119

[Close]

BLAST of Sed0009487 vs. ExPASy TrEMBL
Match: A0A0A0L4E2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652740 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.1e-23
Identity = 71/112 (63.39%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 4   DPFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CRNLVAK 63
           +PFSFTHKLKS I CF  +H    E   + SSP +P   LKSM +   E    CR+LVA+
Sbjct: 6   NPFSFTHKLKSPISCFRPDHD--PELHDNPSSPTSP--ALKSMTSDLPELRGMCRSLVAR 65

Query: 64  IG-RSRRRYHHSADFRYDPSSYALNFEDDRVRDDDYEFPIRDFASRLPASPP 111
           I   SRRRYHHS DFRYDPSSYALNFED+++R DD EFPIRDF SRLPASPP
Sbjct: 66  ISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDD-EFPIRDFTSRLPASPP 112

[Close]

BLAST of Sed0009487 vs. ExPASy TrEMBL
Match: A0A5A7VBS3 (DNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00970 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.7e-23
Identity = 69/110 (62.73%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 4   DPFSFTHKLKSSI-RCFHFNH-SDFSESEADESSPRTPKSPLKSMAAAAAECRNLVAKIG 63
           +PFSFTHKLKSSI  CF  +H ++  E+E D  + ++  S L  +      CR+LVA+I 
Sbjct: 6   NPFSFTHKLKSSIPSCFRPDHDAELHENEDDNPALKSMTSDLPELRGM---CRSLVARIS 65

Query: 64  -RSRRRYHHSADFRYDPSSYALNFEDDRVRDDDYEFPIRDFASRLPASPP 111
             SRRRYHHSADFRYDPSSYALNFED++VRDD+ EFPIRDF SRLPASPP
Sbjct: 66  WPSRRRYHHSADFRYDPSSYALNFEDEQVRDDN-EFPIRDFTSRLPASPP 111

[Close]

BLAST of Sed0009487 vs. TAIR 10
Match: AT5G35090.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 58.9 bits (141), Expect = 3.0e-09
Identity = 32/83 (38.55%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 40  KSP--LKSMAAAAAECRNLVAKI--------GRSRRRYHHSADFRYDPSSYALNFEDDRV 99
           KSP   ++++ +  +C++L+ ++        G  +    H+ADF YDPSSYALNF+    
Sbjct: 62  KSPRLTRTLSKSHEKCKSLIHRMGGGVGGVGGHGKHIRRHTADFHYDPSSYALNFDKGDE 121

Query: 100 RDDDYEFPIRDFASRLPASPPST 113
            D+   FP+R+F++RLP SPPS+
Sbjct: 122 DDNIDRFPLRNFSARLPHSPPSS 144

[Close]

BLAST of Sed0009487 vs. TAIR 10
Match: AT5G11070.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-08
Identity = 43/121 (35.54%), Postives = 55/121 (45.45%), Query Frame = 0


Query: 10  HKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----------------- 69
           H+++S I C   N     E+       RTP+SP + + + A E                 
Sbjct: 20  HRMRSPICCIGANAVVEPEAMMIGGEQRTPRSPYEWLKSTAQELELRDRCRRVKSRIKVT 79

Query: 70  CRNLVAKIGRSRRRYHHS----ADFRYDPSSYALNFEDDRVRDDDYEFPIRDFASRLPAS 110
           CRN           +HHS     DF YDP SYALNFED+   DDD  FP  +F +RLP S
Sbjct: 80  CRNNNCAYNNCVHHHHHSQSYPGDFSYDPLSYALNFEDNVRADDDGSFP--NFTARLPQS 138

The following BLAST results are available for this feature:

BLAST of Sed0009487 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022981208.1	1.3e-38	78.81	uncharacterized protein LOC111480417 [Cucurbita maxima]	[more]
XP_023523424.1	4.9e-38	77.97	uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo]	[more]
KAG7031776.1	8.3e-38	77.97	hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022940408.1	8.3e-38	77.97	uncharacterized protein LOC111446022 [Cucurbita moschata] >KAG6608139.1 hypothet...	[more]
XP_022138148.1	5.2e-32	70.18	uncharacterized protein LOC111009386 [Momordica charantia]	[more]

BLAST of Sed0009487 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0009487 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J1H3	6.2e-39	78.81	uncharacterized protein LOC111480417 OS=Cucurbita maxima OX=3661 GN=LOC111480417...	[more]
A0A6J1FP70	4.0e-38	77.97	uncharacterized protein LOC111446022 OS=Cucurbita moschata OX=3662 GN=LOC1114460...	[more]
A0A6J1CC83	2.5e-32	70.18	uncharacterized protein LOC111009386 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A0A0L4E2	2.1e-23	63.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652740 PE=4 SV=1	[more]
A0A5A7VBS3	3.7e-23	62.73	DNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00970 PE=...	[more]

BLAST of Sed0009487 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35090.1	3.0e-09	38.55	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]
AT5G11070.1	1.5e-08	35.54	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 9..111
None	No IPR available	PANTHER	PTHR33168:SF61	SUBFAMILY NOT NAMED	coord: 9..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009487.1	Sed0009487.1	mRNA