ClCG11G017340 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG11G017340
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	histidine-rich glycoprotein-like
Location	CG_Chr11: 30596447 .. 30597207 (+)
RNA-Seq Expression	ClCG11G017340
Synteny	ClCG11G017340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCACCAAAAAAGAAAAAATAGCCCAAAGTTAAGCAAACCACTTTTGCATTTCCAACTGAGCTTGGTTAACCAAAAATGGCTTACTCTAAGACCTTTCTCCTTCTCGGTCTCCTCCTCGCTCTTCTTTTCATCTCCTCTCATGTCTCGGCTCGTCTACTCGGTTAGTTTGCTTATACCAAACTCGGCCTCTCTAAAAAAATTTGTTTAATAATATATTAAATATATTTTTTAGTGTATTTGTTTTTTAGACATTGTGGTAACTTTAGTACATGAGAAAATTATGAGTTTAAAAACTTAGTTTATTTAGTCACCATTACAAAACAGTTGAGTAGCTAGGCTCATGAATAGTAGAATCTCTATGGATTTTATAAATGTTATATTGATTTTTAGATATGGTGGTGTTTTAACCTAATGTGTTATTTAAACTCTTCTTATTTTCATTGATTTTATACGTAAGAGGAAAAGAAAGGTGATATAGAGAGTGATGATCATGGACATCACGACCACGGTCACCATGGTGGAGGGCATGGTGGACACCACGACCACGATGCTGAGGTCAATTACCTAGACGGTCATCATCACCATGACCACGACCATGGACACCATGACCACGGCCACCACGGTCACGACCATGATGCTGATGTCGATGGTTTAGATGATCACCATGGACACCACGGCGGAGGACATGGTGGACACCATGGCGGACACCACGGCGGACACCACGACCACGATGCAGAAGCTCAAGGCATTAAGAATTAG

mRNA sequence

AAGCACCAAAAAAGAAAAAATAGCCCAAAGTTAAGCAAACCACTTTTGCATTTCCAACTGAGCTTGGTTAACCAAAAATGGCTTACTCTAAGACCTTTCTCCTTCTCGGTCTCCTCCTCGCTCTTCTTTTCATCTCCTCTCATGTCTCGGCTCGTCTACTCGAGGAAAAGAAAGGTGATATAGAGAGTGATGATCATGGACATCACGACCACGGTCACCATGGTGGAGGGCATGGTGGACACCACGACCACGATGCTGAGGTCAATTACCTAGACGGTCATCATCACCATGACCACGACCATGGACACCATGACCACGGCCACCACGGTCACGACCATGATGCTGATGTCGATGGTTTAGATGATCACCATGGACACCACGGCGGAGGACATGGTGGACACCATGGCGGACACCACGGCGGACACCACGACCACGATGCAGAAGCTCAAGGCATTAAGAATTAG

Coding sequence (CDS)

ATGGCTTACTCTAAGACCTTTCTCCTTCTCGGTCTCCTCCTCGCTCTTCTTTTCATCTCCTCTCATGTCTCGGCTCGTCTACTCGAGGAAAAGAAAGGTGATATAGAGAGTGATGATCATGGACATCACGACCACGGTCACCATGGTGGAGGGCATGGTGGACACCACGACCACGATGCTGAGGTCAATTACCTAGACGGTCATCATCACCATGACCACGACCATGGACACCATGACCACGGCCACCACGGTCACGACCATGATGCTGATGTCGATGGTTTAGATGATCACCATGGACACCACGGCGGAGGACATGGTGGACACCATGGCGGACACCACGGCGGACACCACGACCACGATGCAGAAGCTCAAGGCATTAAGAATTAG

Protein sequence

MAYSKTFLLLGLLLALLFISSHVSARLLEEKKGDIESDDHGHHDHGHHGGGHGGHHDHDAEVNYLDGHHHHDHDHGHHDHGHHGHDHDADVDGLDDHHGHHGGGHGGHHGGHHGGHHDHDAEAQGIKN

Homology

[Close]

BLAST of ClCG11G017340 vs. NCBI nr
Match: XP_022138889.1 (histidine-rich membrane protein KE4 homolog 2-like [Momordica charantia])

HSP 1 Score: 128.6 bits (322), Expect = 3.7e-26
Identity = 91/148 (61.49%), Postives = 97/148 (65.54%), Query Frame = 0


Query: 1   MAYSKTFLLLGLLLALLFISSHVSARLLEEKKGDIESDDHGHHDHGHHGGGHGGHHDHDA 60
           MAYSKT LLLGLLLALLF+SSHVSARLL EKKG +E DDH HHDH          HDH  
Sbjct: 1   MAYSKTTLLLGLLLALLFVSSHVSARLLAEKKGSVEGDDH-HHDH---------DHDH-- 60

Query: 61  EVNYLDGHHHHDHDHGHHDHGHH---GHDHDADVDGLDDHHGHHGGGHGGHHGGHHG--- 120
                 GHH HDHDHGHHDH H    GH HDAD+D LDDHHGHHGGGHGGHHGG HG   
Sbjct: 61  ------GHHDHDHDHGHHDHDHDHHGGHHHDADIDSLDDHHGHHGGGHGGHHGGGHGHDA 120

Query: 121 --------------GHHDHDAEAQGIKN 129
                         GHHDHD++  G+KN
Sbjct: 121 DIDSLDDHHGHHDHGHHDHDSKTDGVKN 130

[Close]

BLAST of ClCG11G017340 vs. NCBI nr
Match: XP_038900076.1 (histidine-rich glycoprotein-like [Benincasa hispida])

HSP 1 Score: 127.5 bits (319), Expect = 8.3e-26
Identity = 87/129 (67.44%), Postives = 91/129 (70.54%), Query Frame = 0


Query: 1   MAYSKTFLLLGLLLALLFISSHVSARLLEEKKGDIESDDHGHHDHGHHGGGHGGHHDHDA 60
           MAYSKT L+LGLLLALLF+SSHVSARLLEE KG +ESD HGHH           HHDH  
Sbjct: 1   MAYSKTLLVLGLLLALLFVSSHVSARLLEEDKGGVESDHHGHH-----------HHDH-- 60

Query: 61  EVNYLDGHHHHDHDHGHHDHGHHGHDHDADVDGLDDHHGHHGGGHGGHHGGHHG------ 120
                 GHHHHDH H  HDHGHHGHDHDA+VDGLD HHGHHGGGH GHHGGHHG      
Sbjct: 61  ------GHHHHDHGHHDHDHGHHGHDHDANVDGLDGHHGHHGGGH-GHHGGHHGHDANVN 109

[Close]

BLAST of ClCG11G017340 vs. NCBI nr
Match: KAG6591765.1 (hypothetical protein SDJN03_14111, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.3 bits (303), Expect = 6.0e-24
Identity = 92/141 (65.25%), Postives = 97/141 (68.79%), Query Frame = 0


Query: 1   MAYSKTFLLLGLLLALLFISSHVSARLLEEKKGDIESDDHGHHDHGHHGGGH--GGHHDH 60
           MAYSKTFLLLGLLLALLFISSHVSAR LEEKK D+ESD HGHHDHGHH  GH   GHH H
Sbjct: 1   MAYSKTFLLLGLLLALLFISSHVSARFLEEKKSDVESDGHGHHDHGHHDHGHHDHGHHGH 60

Query: 61  DAEVNYLDGHHHHDHDHGHHDHGHHG-HDHDADVDGLDDHHGHHG-------GGHGGHHG 120
           DA V+ LDGH      HGHH  GH G H HDADVD LD HHGHH          H  HH 
Sbjct: 61  DANVDGLDGH------HGHHGGGHGGHHGHDADVDDLDGHHGHHDHHDHHDHHDHHDHHD 120

Query: 121 --GHHGGH-HDHDAEAQGIKN 129
              HHG H HDHDA+ + +KN
Sbjct: 121 HHDHHGHHGHDHDAKIEDVKN 135

[Close]

BLAST of ClCG11G017340 vs. NCBI nr
Match: KAG7024647.1 (hypothetical protein SDJN02_13465, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.9 bits (302), Expect = 7.8e-24
Identity = 91/141 (64.54%), Postives = 97/141 (68.79%), Query Frame = 0


Query: 1   MAYSKTFLLLGLLLALLFISSHVSARLLEEKKGDIESDDHGHHDHGHHGGGH--GGHHDH 60
           MAYSKTFLLLGLLLALLF+SSHVSAR LEEKK D+ESD HGHHDHGHH  GH   GHH H
Sbjct: 1   MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESDGHGHHDHGHHDHGHHDHGHHGH 60

Query: 61  DAEVNYLDGHHHHDHDHGHHDHGHHG-HDHDADVDGLDDHHGHHG-------GGHGGHHG 120
           DA V+ LDGH      HGHH  GH G H HDADVD LD HHGHH          H  HH 
Sbjct: 61  DANVDGLDGH------HGHHGGGHGGHHGHDADVDDLDGHHGHHDHHDHHDHHDHHDHHD 120

Query: 121 --GHHGGH-HDHDAEAQGIKN 129
              HHG H HDHDA+ + +KN
Sbjct: 121 HHDHHGHHGHDHDAKIEDVKN 135

[Close]

BLAST of ClCG11G017340 vs. NCBI nr
Match: XP_022935989.1 (histidine-rich glycoprotein-like [Cucurbita moschata])

HSP 1 Score: 118.2 bits (295), Expect = 5.1e-23
Identity = 89/132 (67.42%), Postives = 95/132 (71.97%), Query Frame = 0


Query: 1   MAYSKTFLLLGLLLALLFISSHVSARLLEEKKGDIESDDHGHHDHGHHGGGHGGHHDHDA 60
           MAYSKTFLLLGLLLALLFISSHVSAR LEEKK D+ESD HGHHDHGHH     GHH HDA
Sbjct: 1   MAYSKTFLLLGLLLALLFISSHVSARFLEEKKSDVESDGHGHHDHGHH---DHGHHGHDA 60

Query: 61  EVNYLDGHHHHDHDHGHHDHGHHGHDHDADVDGLDDHHGHHG-GGHGGHHG--GHHGGH- 120
            V+ LDGHH H   HG    GHHG  HDAD+D LD HHGHH    H  HH    HHG H 
Sbjct: 61  NVDGLDGHHEH---HGGGHGGHHG--HDADIDDLDGHHGHHDHHDHHDHHDHHDHHGHHG 120

Query: 121 HDHDAEAQGIKN 129
           HDHDA+ + +KN
Sbjct: 121 HDHDAKTEDVKN 124

[Close]

BLAST of ClCG11G017340 vs. ExPASy TrEMBL
Match: A0A6J1CBC6 (histidine-rich membrane protein KE4 homolog 2-like OS=Momordica charantia OX=3673 GN=LOC111009957 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.8e-26
Identity = 91/148 (61.49%), Postives = 97/148 (65.54%), Query Frame = 0


Query: 1   MAYSKTFLLLGLLLALLFISSHVSARLLEEKKGDIESDDHGHHDHGHHGGGHGGHHDHDA 60
           MAYSKT LLLGLLLALLF+SSHVSARLL EKKG +E DDH HHDH          HDH  
Sbjct: 1   MAYSKTTLLLGLLLALLFVSSHVSARLLAEKKGSVEGDDH-HHDH---------DHDH-- 60

Query: 61  EVNYLDGHHHHDHDHGHHDHGHH---GHDHDADVDGLDDHHGHHGGGHGGHHGGHHG--- 120
                 GHH HDHDHGHHDH H    GH HDAD+D LDDHHGHHGGGHGGHHGG HG   
Sbjct: 61  ------GHHDHDHDHGHHDHDHDHHGGHHHDADIDSLDDHHGHHGGGHGGHHGGGHGHDA 120

Query: 121 --------------GHHDHDAEAQGIKN 129
                         GHHDHD++  G+KN
Sbjct: 121 DIDSLDDHHGHHDHGHHDHDSKTDGVKN 130

[Close]

BLAST of ClCG11G017340 vs. ExPASy TrEMBL
Match: A0A6J1F6Z7 (histidine-rich glycoprotein-like OS=Cucurbita moschata OX=3662 GN=LOC111442725 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.5e-23
Identity = 89/132 (67.42%), Postives = 95/132 (71.97%), Query Frame = 0


Query: 1   MAYSKTFLLLGLLLALLFISSHVSARLLEEKKGDIESDDHGHHDHGHHGGGHGGHHDHDA 60
           MAYSKTFLLLGLLLALLFISSHVSAR LEEKK D+ESD HGHHDHGHH     GHH HDA
Sbjct: 1   MAYSKTFLLLGLLLALLFISSHVSARFLEEKKSDVESDGHGHHDHGHH---DHGHHGHDA 60

Query: 61  EVNYLDGHHHHDHDHGHHDHGHHGHDHDADVDGLDDHHGHHG-GGHGGHHG--GHHGGH- 120
            V+ LDGHH H   HG    GHHG  HDAD+D LD HHGHH    H  HH    HHG H 
Sbjct: 61  NVDGLDGHHEH---HGGGHGGHHG--HDADIDDLDGHHGHHDHHDHHDHHDHHDHHGHHG 120

Query: 121 HDHDAEAQGIKN 129
           HDHDA+ + +KN
Sbjct: 121 HDHDAKTEDVKN 124

[Close]

BLAST of ClCG11G017340 vs. ExPASy TrEMBL
Match: A0A6J1IKT3 (histidine-rich glycoprotein-like OS=Cucurbita maxima OX=3661 GN=LOC111476525 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 7.1e-23
Identity = 92/151 (60.93%), Postives = 99/151 (65.56%), Query Frame = 0


Query: 1   MAYSKTFLLLGLLLALLFISSHVSARLLEEKKGDIESDDHGHHD---------------- 60
           MAYSKTFLLLGLLLALLF+SSHVSAR LEEKK D+ESD HGHHD                
Sbjct: 1   MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESDSHGHHDHGHHDHGHHGHDANVD 60

Query: 61  -----HGHHGGGHGGHHDHDAEVNYLDGHH-HHDHDHGHHDHGHHGHDHDADVDGLDDHH 120
                HGHHGGGHGGHH HDA+V+ LDGHH HHDH H HHDH H  HDH        DHH
Sbjct: 61  GLDGHHGHHGGGHGGHHGHDADVDDLDGHHGHHDH-HDHHDH-HDHHDH-------HDHH 120

Query: 121 GHHGGGHGGHHGGHHGGH-HDHDAEAQGIKN 129
            HH   H  HH  HHG H HDHDA+ + +KN
Sbjct: 121 DHH--DHHDHH-DHHGHHGHDHDAKMEDVKN 139

[Close]

BLAST of ClCG11G017340 vs. ExPASy TrEMBL
Match: A0A6J1J1J4 (histidine-rich glycoprotein-like OS=Cucurbita maxima OX=3661 GN=LOC111480431 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.8e-08
Identity = 70/129 (54.26%), Postives = 79/129 (61.24%), Query Frame = 0


Query: 1   MAYSKTFLLLGLLLALLFISSHVSARLLEEKKGDIESDDHGHHDHGHHGGGHGGHHDHDA 60
           MAYSKTFLLL LLLALL++SSHVSARLLEEKK  ++SDDH   DH H  G H   HDHD 
Sbjct: 1   MAYSKTFLLLSLLLALLYVSSHVSARLLEEKKSVVKSDDH-DDDHDHGLGYHYDGHDHDH 60

Query: 61  EVNY-LDGHHHHDH-DHGHHDHGHHGH-DHDADVDGLDDHHGHHGGGHGGHHGGHHGGHH 120
           E ++  D H H DH DH H DH  H H DHD D     DH+ H    H  H    H   H
Sbjct: 61  EDDHDHDKHDHDDHDDHDHDDHDDHDHNDHDKDDHDDHDHNDHDKDDHDDHDHDDHDHDH 120

Query: 121 DHDAEAQGI 127
           DHDA+   +
Sbjct: 121 DHDADVNSL 128

[Close]

BLAST of ClCG11G017340 vs. ExPASy TrEMBL
Match: A0A6J1F6Z1 (histidine-rich protein PFHRP-II-like OS=Cucurbita moschata OX=3662 GN=LOC111442913 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.5e-08
Identity = 78/181 (43.09%), Postives = 89/181 (49.17%), Query Frame = 0


Query: 1   MAYSKTFLLLGLLLALLFISSHVSARLLEEKKGDIESDDHGH----------------HD 60
           M Y +T LLL LLLALLF+SSHVSAR L E+  D ESD HG+                HD
Sbjct: 1   MTYYRTLLLLDLLLALLFVSSHVSARFLGEEPSDGESDGHGYDPYSQEQYLYGDGHNVHD 60

Query: 61  HGHHG----------------GGHG-------GHHDHDAEVNYLD---GH------HHHD 120
           HGHHG                GG G       GHH  + +V+ LD   GH       HH 
Sbjct: 61  HGHHGHGADVDILDDHIGHHVGGSGGDHVYDEGHHGQNVDVDGLDDRYGHPIEAHGAHHI 120

The following BLAST results are available for this feature:

BLAST of ClCG11G017340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138889.1	3.7e-26	61.49	histidine-rich membrane protein KE4 homolog 2-like [Momordica charantia]	[more]
XP_038900076.1	8.3e-26	67.44	histidine-rich glycoprotein-like [Benincasa hispida]	[more]
KAG6591765.1	6.0e-24	65.25	hypothetical protein SDJN03_14111, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7024647.1	7.8e-24	64.54	hypothetical protein SDJN02_13465, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022935989.1	5.1e-23	67.42	histidine-rich glycoprotein-like [Cucurbita moschata]	[more]

BLAST of ClCG11G017340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG11G017340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CBC6	1.8e-26	61.49	histidine-rich membrane protein KE4 homolog 2-like OS=Momordica charantia OX=367...	[more]
A0A6J1F6Z7	2.5e-23	67.42	histidine-rich glycoprotein-like OS=Cucurbita moschata OX=3662 GN=LOC111442725 P...	[more]
A0A6J1IKT3	7.1e-23	60.93	histidine-rich glycoprotein-like OS=Cucurbita maxima OX=3661 GN=LOC111476525 PE=...	[more]
A0A6J1J1J4	3.8e-08	54.26	histidine-rich glycoprotein-like OS=Cucurbita maxima OX=3661 GN=LOC111480431 PE=...	[more]
A0A6J1F6Z1	8.5e-08	43.09	histidine-rich protein PFHRP-II-like OS=Cucurbita moschata OX=3662 GN=LOC1114429...	[more]

BLAST of ClCG11G017340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G017340.1	ClCG11G017340.1	mRNA