Sed0006825 (gene) Chayote v1

Overview


Name	Sed0006825
Type	gene
Organism	Sechium edule (Chayote v1)
Description	TLC domain-containing protein
Location	LG06: 41984036 .. 41984888 (-)
RNA-Seq Expression	Sed0006825
Synteny	Sed0006825

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCATCACAGAGCTTTGAAGTTTGAATATCAATGGAGTTTTTTCAAATCCTGGATTGCCCATCATTGCCTTTGTTCTTCCTCATGTTCCTATTCGTGTATCTTTTCGCCTACTATGTCGTGTTAAGAACCTGGGGGCCGAAGCACAGACTCGAGGCTTCAAGCTGCATCATCTCACTCGCCCATGGCAGCCCCGTTGTCTTCATGGCCATCGTCGCGAATCTTCGAGCTCCCAACATGTTCGATTTTGCTGCTCCCAACACCGAACTCCAGGGCATTGTTCTCCAATACAGCATAGCTTATTTCTTGGTGGATCTTCTACATTACGCGCTGTTTTATCCACACAACTTCGTCTTCATCGCTCATCATTTGGCTGTGCTTTACGTCTTTGTAACCTGCCATTACTTGGTTCGTCGTGGGGCTGTGGCGATCCTGGTGCTGCTGGTGCTTGCGGAGCTCAGCAGCGCGTGCCAGAACGCTTGGACCCTTGCGGGTTATAGAAGGACAGATGTAGCGGCCGCGGCTAAGTTTCAGGACTTTGTGGCTCCTTATTTCTATACCCTTTATAGCATTCTTAGAGGGGGCTTGGCGCCTGTGTTTTTGCATAAGATGGGGGAATTTTATGTTGGGGCTGAGAATTTGATTCCTATGTGGGCTTGGATTTCATGGATGGGTGTAATTGGAACTGCTATTTTTGTCAGTATATTGTGGGTTGGGAACCATTGGGTTCTGTGGTATCAGTACAGAAAGCATGGGAAAGCAGTGTGAATATATTTTAGATGGGAAGATAGGTTTAGTCTAGCGGCAATTGACATATATCTTCAGACAAGAGATCGCATATTCGAATGCCAAAC

mRNA sequence

CATCATCACAGAGCTTTGAAGTTTGAATATCAATGGAGTTTTTTCAAATCCTGGATTGCCCATCATTGCCTTTGTTCTTCCTCATGTTCCTATTCGTGTATCTTTTCGCCTACTATGTCGTGTTAAGAACCTGGGGGCCGAAGCACAGACTCGAGGCTTCAAGCTGCATCATCTCACTCGCCCATGGCAGCCCCGTTGTCTTCATGGCCATCGTCGCGAATCTTCGAGCTCCCAACATGTTCGATTTTGCTGCTCCCAACACCGAACTCCAGGGCATTGTTCTCCAATACAGCATAGCTTATTTCTTGGTGGATCTTCTACATTACGCGCTGTTTTATCCACACAACTTCGTCTTCATCGCTCATCATTTGGCTGTGCTTTACGTCTTTGTAACCTGCCATTACTTGGTTCGTCGTGGGGCTGTGGCGATCCTGGTGCTGCTGGTGCTTGCGGAGCTCAGCAGCGCGTGCCAGAACGCTTGGACCCTTGCGGGTTATAGAAGGACAGATGTAGCGGCCGCGGCTAAGTTTCAGGACTTTGTGGCTCCTTATTTCTATACCCTTTATAGCATTCTTAGAGGGGGCTTGGCGCCTGTGTTTTTGCATAAGATGGGGGAATTTTATGTTGGGGCTGAGAATTTGATTCCTATGTGGGCTTGGATTTCATGGATGGGTGTAATTGGAACTGCTATTTTTGTCAGTATATTGTGGGTTGGGAACCATTGGGTTCTGTGGTATCAGTACAGAAAGCATGGGAAAGCAGTGTGAATATATTTTAGATGGGAAGATAGGTTTAGTCTAGCGGCAATTGACATATATCTTCAGACAAGAGATCGCATATTCGAATGCCAAAC

Coding sequence (CDS)

ATGGAGTTTTTTCAAATCCTGGATTGCCCATCATTGCCTTTGTTCTTCCTCATGTTCCTATTCGTGTATCTTTTCGCCTACTATGTCGTGTTAAGAACCTGGGGGCCGAAGCACAGACTCGAGGCTTCAAGCTGCATCATCTCACTCGCCCATGGCAGCCCCGTTGTCTTCATGGCCATCGTCGCGAATCTTCGAGCTCCCAACATGTTCGATTTTGCTGCTCCCAACACCGAACTCCAGGGCATTGTTCTCCAATACAGCATAGCTTATTTCTTGGTGGATCTTCTACATTACGCGCTGTTTTATCCACACAACTTCGTCTTCATCGCTCATCATTTGGCTGTGCTTTACGTCTTTGTAACCTGCCATTACTTGGTTCGTCGTGGGGCTGTGGCGATCCTGGTGCTGCTGGTGCTTGCGGAGCTCAGCAGCGCGTGCCAGAACGCTTGGACCCTTGCGGGTTATAGAAGGACAGATGTAGCGGCCGCGGCTAAGTTTCAGGACTTTGTGGCTCCTTATTTCTATACCCTTTATAGCATTCTTAGAGGGGGCTTGGCGCCTGTGTTTTTGCATAAGATGGGGGAATTTTATGTTGGGGCTGAGAATTTGATTCCTATGTGGGCTTGGATTTCATGGATGGGTGTAATTGGAACTGCTATTTTTGTCAGTATATTGTGGGTTGGGAACCATTGGGTTCTGTGGTATCAGTACAGAAAGCATGGGAAAGCAGTGTGA

Protein sequence

MEFFQILDCPSLPLFFLMFLFVYLFAYYVVLRTWGPKHRLEASSCIISLAHGSPVVFMAIVANLRAPNMFDFAAPNTELQGIVLQYSIAYFLVDLLHYALFYPHNFVFIAHHLAVLYVFVTCHYLVRRGAVAILVLLVLAELSSACQNAWTLAGYRRTDVAAAAKFQDFVAPYFYTLYSILRGGLAPVFLHKMGEFYVGAENLIPMWAWISWMGVIGTAIFVSILWVGNHWVLWYQYRKHGKAV

Homology

[Close]

BLAST of Sed0006825 vs. NCBI nr
Match: XP_023554709.1 (TLC domain-containing protein At5g14285-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 379.8 bits (974), Expect = 1.8e-101
Identity = 190/236 (80.51%), Postives = 207/236 (87.71%), Query Frame = 0


Query: 11  SLPLFFLMFLFVYLFAYYVVLRTWGPKHRLEASSCIISLAHGSPVVFMAIVANLRAPNMF 70
           +L LFF MFLFVY+FAY VVL+ WGPKHR+EASSC ISLAHGSPVV MAI+A L+APNM 
Sbjct: 13  ALLLFFFMFLFVYVFAYLVVLQNWGPKHRIEASSCFISLAHGSPVVIMAIIAILQAPNMA 72

Query: 71  DFAAPNTELQGIVLQYSIAYFLVDLLHYALFYPHNFVFIAHHLAVLYVFVTCHYLVRRGA 130
           DFAA NT+ QG+VL+YS+AYFL+DLLHY LFYP +FVFI HHLAVLYVF TCHYLVRRGA
Sbjct: 73  DFAALNTKYQGLVLEYSMAYFLMDLLHYILFYPRDFVFICHHLAVLYVFATCHYLVRRGA 132

Query: 131 VAILVLLVLAELSSACQNAWTLAGYRRTDVAAAAKFQDFVAPYFYTLYSILRGGLAPVFL 190
           + ILVLLVLAE SS CQN WTLAGYRR DV AAAKFQDFV+PYF+T YSILRGG APVFL
Sbjct: 133 LPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTFYSILRGGFAPVFL 192

Query: 191 HKMGEFYV--GAENLIPMWAWISWMGVIGTAIFVSILWVGNHWVLWYQYRKHGKAV 245
           HKMGEFYV   AENLIP WAWISWMGVIGTAI VSILWVGNHWVLW++  KHGKAV
Sbjct: 193 HKMGEFYVSSAAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWFRRTKHGKAV 248

[Close]

BLAST of Sed0006825 vs. NCBI nr
Match: XP_022998555.1 (TLC domain-containing protein At5g14285-like [Cucurbita maxima])

HSP 1 Score: 376.7 bits (966), Expect = 1.5e-100
Identity = 192/247 (77.73%), Postives = 211/247 (85.43%), Query Frame = 0


Query: 4   FQILDCPS----LPLFFLMFLFVYLFAYYVVLRTWGPKHRLEASSCIISLAHGSPVVFMA 63
           FQ+ + PS       FF MFLFVY+FAY VVL+ WGPKHRLEASSC ISLAHGSPVV MA
Sbjct: 3   FQMPESPSSLALFFFFFFMFLFVYVFAYLVVLQNWGPKHRLEASSCFISLAHGSPVVIMA 62

Query: 64  IVANLRAPNMFDFAAPNTELQGIVLQYSIAYFLVDLLHYALFYPHNFVFIAHHLAVLYVF 123
           I+A L+APNM DFAA NT+ QG+VLQYS+AYFL+DLLH+ LFYP +FVFI HHLAVLYVF
Sbjct: 63  IIAILQAPNMADFAALNTKYQGLVLQYSMAYFLMDLLHFILFYPRDFVFICHHLAVLYVF 122

Query: 124 VTCHYLVRRGAVAILVLLVLAELSSACQNAWTLAGYRRTDVAAAAKFQDFVAPYFYTLYS 183
            TC+YLVRRGA+ ILVLLVLAE SS CQN WTLAGYRR DV AAAKFQDFV+PYF+T YS
Sbjct: 123 ATCNYLVRRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTFYS 182

Query: 184 ILRGGLAPVFLHKMGEFYV--GAENLIPMWAWISWMGVIGTAIFVSILWVGNHWVLWYQY 243
           ILRGG APVFLHKMGEFYV   AENLIP WAWISWMGVIGTAI VSILWVGNHWVLW++ 
Sbjct: 183 ILRGGFAPVFLHKMGEFYVSRAAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWFRC 242

Query: 244 RKHGKAV 245
           +KHGKAV
Sbjct: 243 KKHGKAV 249

[Close]

BLAST of Sed0006825 vs. NCBI nr
Match: XP_022956623.1 (TLC domain-containing protein At5g14285-like [Cucurbita moschata])

HSP 1 Score: 376.7 bits (966), Expect = 1.5e-100
Identity = 192/247 (77.73%), Postives = 210/247 (85.02%), Query Frame = 0


Query: 4   FQILDCPS----LPLFFLMFLFVYLFAYYVVLRTWGPKHRLEASSCIISLAHGSPVVFMA 63
           FQ+ + PS    L  FF MFLFVY+FAY VVL+ WGPKHRLEASSC ISLAHG PVV MA
Sbjct: 3   FQMPESPSSLALLFFFFFMFLFVYVFAYLVVLQNWGPKHRLEASSCFISLAHGCPVVIMA 62

Query: 64  IVANLRAPNMFDFAAPNTELQGIVLQYSIAYFLVDLLHYALFYPHNFVFIAHHLAVLYVF 123
           I+A L+APNM DFAA NT+ QG+VL+YS+AYFL+DLLH+ LFYP +FVFI HHLAVLYVF
Sbjct: 63  IIAILQAPNMADFAALNTKYQGLVLEYSMAYFLMDLLHFILFYPRDFVFICHHLAVLYVF 122

Query: 124 VTCHYLVRRGAVAILVLLVLAELSSACQNAWTLAGYRRTDVAAAAKFQDFVAPYFYTLYS 183
            TCHYLV RGA+ ILVLLVLAE SS CQN WTLAGYRR DV AAAKFQDFV+PYF+T YS
Sbjct: 123 ATCHYLVSRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTFYS 182

Query: 184 ILRGGLAPVFLHKMGEFYV--GAENLIPMWAWISWMGVIGTAIFVSILWVGNHWVLWYQY 243
           ILRGG APVFLHKMGEFYV   AENLIP WAWISWMGVIGTAIFVSILWVGNHWVLW++ 
Sbjct: 183 ILRGGFAPVFLHKMGEFYVSSAAENLIPKWAWISWMGVIGTAIFVSILWVGNHWVLWFRR 242

Query: 244 RKHGKAV 245
            KHGKAV
Sbjct: 243 TKHGKAV 249

[Close]

BLAST of Sed0006825 vs. NCBI nr
Match: KAG6601580.1 (TLC domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032345.1 TLC domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 376.7 bits (966), Expect = 1.5e-100
Identity = 189/235 (80.43%), Postives = 205/235 (87.23%), Query Frame = 0


Query: 12  LPLFFLMFLFVYLFAYYVVLRTWGPKHRLEASSCIISLAHGSPVVFMAIVANLRAPNMFD 71
           L  FF MFLFVY+FAY VVL+ WGPKHRLEASSC ISLAHGSPVV MAI+A L+APN+ D
Sbjct: 11  LLFFFFMFLFVYVFAYLVVLQNWGPKHRLEASSCFISLAHGSPVVIMAIIAILQAPNVAD 70

Query: 72  FAAPNTELQGIVLQYSIAYFLVDLLHYALFYPHNFVFIAHHLAVLYVFVTCHYLVRRGAV 131
           FAA NT+ QG+VL+YS+AYFL+DLLHY LFYP +FVFI HHLAVLYVF TCHYLVRRGA+
Sbjct: 71  FAALNTKYQGLVLEYSMAYFLMDLLHYILFYPRDFVFICHHLAVLYVFATCHYLVRRGAL 130

Query: 132 AILVLLVLAELSSACQNAWTLAGYRRTDVAAAAKFQDFVAPYFYTLYSILRGGLAPVFLH 191
            ILVLLVLAE SS CQN WTLAGYRR DV AAAKFQDFV+PYF+T YSILRGG APVFLH
Sbjct: 131 PILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTFYSILRGGFAPVFLH 190

Query: 192 KMGEFYV--GAENLIPMWAWISWMGVIGTAIFVSILWVGNHWVLWYQYRKHGKAV 245
           KMGEFYV   AENLIP WAWISWMGVIGTAI VSILWVGNHWVLW++  KHGKAV
Sbjct: 191 KMGEFYVSSAAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWFRRTKHGKAV 245

[Close]

BLAST of Sed0006825 vs. NCBI nr
Match: XP_022151969.1 (TLC domain-containing protein At5g14285-like [Momordica charantia])

HSP 1 Score: 350.1 bits (897), Expect = 1.5e-92
Identity = 178/244 (72.95%), Postives = 198/244 (81.15%), Query Frame = 0


Query: 5   QILDC--PSLPLFFLMFLFVYLFAYYVVLRTWGPKHRLEASSCIISLAHGSPVVFMAIVA 64
           QIL+   P L +FFLMFLF+YLF Y VV R+WGPKHRLEA+S  +SLAHG+P   MAI+A
Sbjct: 4   QILEIPFPLLAVFFLMFLFMYLFGYLVVFRSWGPKHRLEAASSFMSLAHGTPAAAMAILA 63

Query: 65  NLRAPNMFDFAAPNTELQGIVLQYSIAYFLVDLLHYALFYPHNFVFIAHHLAVLYVFVTC 124
            L APN  DFAA NT  QG+VL+YSIAYFLVDLLHY LFYP + VFI HHLAV+YVFVTC
Sbjct: 64  VLHAPNAGDFAALNTNFQGLVLEYSIAYFLVDLLHYVLFYPRDLVFICHHLAVIYVFVTC 123

Query: 125 HYLVRRGAVAILVLLVLAELSSACQNAWTLAGYRRTDVAAAAKFQDFVAPYFYTLYSILR 184
           HYLV  GAV ILVLLVLAEL+S C NAW LAGYRR D  AAAKFQD ++PYFYT YS LR
Sbjct: 124 HYLVHHGAVPILVLLVLAELTSGCHNAWGLAGYRRADAPAAAKFQDALSPYFYTYYSTLR 183

Query: 185 GGLAPVFLHKMGEFYV--GAENLIPMWAWISWMGVIGTAIFVSILWVGNHWVLWYQYRKH 244
           GGLAPVFLHKMG FYV   AEN+IP WAWISWMGVI TAI VSILW+GNHW LW++ R+H
Sbjct: 184 GGLAPVFLHKMGIFYVSGAAENVIPKWAWISWMGVIATAILVSILWIGNHWALWFRQRRH 243

[Close]

BLAST of Sed0006825 vs. ExPASy Swiss-Prot
Match: Q8GYK7 (TLC domain-containing protein At5g14285 OS=Arabidopsis thaliana OX=3702 GN=At5g14285 PE=2 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.5e-60
Identity = 126/240 (52.50%), Postives = 161/240 (67.08%), Query Frame = 0


Query: 7   LDCPSLPLFFLMFLFVYLFAYYVVLRTWGPKHRLEASSCIISLAHGSPVVFMAIVANLRA 66
           +  P LP+FF MFL +YL AY++V R W P+ R EASSC+IS+ HGSP VF+A  A   +
Sbjct: 8   ISIPDLPIFFSMFLTIYLIAYFIVFRNWKPQIRPEASSCLISIFHGSPAVFLATRAVFSS 67

Query: 67  PNMFDFAAPNTELQGIVLQYSIAYFLVDLLHYALFYPHNFVFIAHHLAVLYVFVTCHYLV 126
                FA+ NT  Q  VL +S+AYFL DL HY +F P++ +FI HH+A L+VF+TC +LV
Sbjct: 68  SER-SFASANTAAQNTVLDFSVAYFLTDLFHYIVFNPNDVLFIGHHVATLFVFLTCRFLV 127

Query: 127 RRGAVAILVLLVLAELSSACQNAWTLAGYRRTDVAA--AAKFQDFVAPYFYTLYSILRGG 186
             GA AIL LL+LAE++SACQNAWTLAG R+ D  +  A K  D ++P FY  YSI+RG 
Sbjct: 128 FHGACAILGLLILAEVTSACQNAWTLAGARKNDPESRLAVKVYDLLSPPFYAFYSIVRGV 187

Query: 187 LAPVFLHKMGEFYV--GAENLIPMWAWISWMGVIGTAIFVSILWVGNHWVLWYQYRKHGK 243
           L P+F  KM  FY   GA  +IP W WISW  V+G AI VSILW+ N W+  +  RK  K
Sbjct: 188 LGPLFFGKMVAFYARGGAHGVIPNWLWISWAIVVGIAITVSILWIWNLWIELFSERKANK 246

[Close]

BLAST of Sed0006825 vs. ExPASy TrEMBL
Match: A0A6J1KCU9 (TLC domain-containing protein At5g14285-like OS=Cucurbita maxima OX=3661 GN=LOC111493150 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 7.3e-101
Identity = 192/247 (77.73%), Postives = 211/247 (85.43%), Query Frame = 0


Query: 4   FQILDCPS----LPLFFLMFLFVYLFAYYVVLRTWGPKHRLEASSCIISLAHGSPVVFMA 63
           FQ+ + PS       FF MFLFVY+FAY VVL+ WGPKHRLEASSC ISLAHGSPVV MA
Sbjct: 3   FQMPESPSSLALFFFFFFMFLFVYVFAYLVVLQNWGPKHRLEASSCFISLAHGSPVVIMA 62

Query: 64  IVANLRAPNMFDFAAPNTELQGIVLQYSIAYFLVDLLHYALFYPHNFVFIAHHLAVLYVF 123
           I+A L+APNM DFAA NT+ QG+VLQYS+AYFL+DLLH+ LFYP +FVFI HHLAVLYVF
Sbjct: 63  IIAILQAPNMADFAALNTKYQGLVLQYSMAYFLMDLLHFILFYPRDFVFICHHLAVLYVF 122

Query: 124 VTCHYLVRRGAVAILVLLVLAELSSACQNAWTLAGYRRTDVAAAAKFQDFVAPYFYTLYS 183
            TC+YLVRRGA+ ILVLLVLAE SS CQN WTLAGYRR DV AAAKFQDFV+PYF+T YS
Sbjct: 123 ATCNYLVRRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTFYS 182

Query: 184 ILRGGLAPVFLHKMGEFYV--GAENLIPMWAWISWMGVIGTAIFVSILWVGNHWVLWYQY 243
           ILRGG APVFLHKMGEFYV   AENLIP WAWISWMGVIGTAI VSILWVGNHWVLW++ 
Sbjct: 183 ILRGGFAPVFLHKMGEFYVSRAAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWFRC 242

Query: 244 RKHGKAV 245
           +KHGKAV
Sbjct: 243 KKHGKAV 249

[Close]

BLAST of Sed0006825 vs. ExPASy TrEMBL
Match: A0A6J1GXG9 (TLC domain-containing protein At5g14285-like OS=Cucurbita moschata OX=3662 GN=LOC111458300 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 7.3e-101
Identity = 192/247 (77.73%), Postives = 210/247 (85.02%), Query Frame = 0


Query: 4   FQILDCPS----LPLFFLMFLFVYLFAYYVVLRTWGPKHRLEASSCIISLAHGSPVVFMA 63
           FQ+ + PS    L  FF MFLFVY+FAY VVL+ WGPKHRLEASSC ISLAHG PVV MA
Sbjct: 3   FQMPESPSSLALLFFFFFMFLFVYVFAYLVVLQNWGPKHRLEASSCFISLAHGCPVVIMA 62

Query: 64  IVANLRAPNMFDFAAPNTELQGIVLQYSIAYFLVDLLHYALFYPHNFVFIAHHLAVLYVF 123
           I+A L+APNM DFAA NT+ QG+VL+YS+AYFL+DLLH+ LFYP +FVFI HHLAVLYVF
Sbjct: 63  IIAILQAPNMADFAALNTKYQGLVLEYSMAYFLMDLLHFILFYPRDFVFICHHLAVLYVF 122

Query: 124 VTCHYLVRRGAVAILVLLVLAELSSACQNAWTLAGYRRTDVAAAAKFQDFVAPYFYTLYS 183
            TCHYLV RGA+ ILVLLVLAE SS CQN WTLAGYRR DV AAAKFQDFV+PYF+T YS
Sbjct: 123 ATCHYLVSRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTFYS 182

Query: 184 ILRGGLAPVFLHKMGEFYV--GAENLIPMWAWISWMGVIGTAIFVSILWVGNHWVLWYQY 243
           ILRGG APVFLHKMGEFYV   AENLIP WAWISWMGVIGTAIFVSILWVGNHWVLW++ 
Sbjct: 183 ILRGGFAPVFLHKMGEFYVSSAAENLIPKWAWISWMGVIGTAIFVSILWVGNHWVLWFRR 242

Query: 244 RKHGKAV 245
            KHGKAV
Sbjct: 243 TKHGKAV 249

[Close]

BLAST of Sed0006825 vs. ExPASy TrEMBL
Match: A0A6J1DEM0 (TLC domain-containing protein At5g14285-like OS=Momordica charantia OX=3673 GN=LOC111019804 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 7.3e-93
Identity = 178/244 (72.95%), Postives = 198/244 (81.15%), Query Frame = 0


Query: 5   QILDC--PSLPLFFLMFLFVYLFAYYVVLRTWGPKHRLEASSCIISLAHGSPVVFMAIVA 64
           QIL+   P L +FFLMFLF+YLF Y VV R+WGPKHRLEA+S  +SLAHG+P   MAI+A
Sbjct: 4   QILEIPFPLLAVFFLMFLFMYLFGYLVVFRSWGPKHRLEAASSFMSLAHGTPAAAMAILA 63

Query: 65  NLRAPNMFDFAAPNTELQGIVLQYSIAYFLVDLLHYALFYPHNFVFIAHHLAVLYVFVTC 124
            L APN  DFAA NT  QG+VL+YSIAYFLVDLLHY LFYP + VFI HHLAV+YVFVTC
Sbjct: 64  VLHAPNAGDFAALNTNFQGLVLEYSIAYFLVDLLHYVLFYPRDLVFICHHLAVIYVFVTC 123

Query: 125 HYLVRRGAVAILVLLVLAELSSACQNAWTLAGYRRTDVAAAAKFQDFVAPYFYTLYSILR 184
           HYLV  GAV ILVLLVLAEL+S C NAW LAGYRR D  AAAKFQD ++PYFYT YS LR
Sbjct: 124 HYLVHHGAVPILVLLVLAELTSGCHNAWGLAGYRRADAPAAAKFQDALSPYFYTYYSTLR 183

Query: 185 GGLAPVFLHKMGEFYV--GAENLIPMWAWISWMGVIGTAIFVSILWVGNHWVLWYQYRKH 244
           GGLAPVFLHKMG FYV   AEN+IP WAWISWMGVI TAI VSILW+GNHW LW++ R+H
Sbjct: 184 GGLAPVFLHKMGIFYVSGAAENVIPKWAWISWMGVIATAILVSILWIGNHWALWFRQRRH 243

[Close]

BLAST of Sed0006825 vs. ExPASy TrEMBL
Match: A0A0A0KVB7 (TLC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G590130 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 5.6e-85
Identity = 166/228 (72.81%), Postives = 191/228 (83.77%), Query Frame = 0


Query: 12  LPLFFLMFLFVYLFAYYVVLRTWGPKHRLEASSCIISLAHGSPVVFMAIVANLRAPNMFD 71
           LPLFF MFLFVY FAY V+LR WGPKHRLEASSC ISLAHG+PVV +A +A L++PN  D
Sbjct: 5   LPLFFAMFLFVYTFAYSVLLRNWGPKHRLEASSCFISLAHGTPVVILAAIAILQSPNSTD 64

Query: 72  FAAPNTELQGIVLQYSIAYFLVDLLHYALFYPHNFVFIAHHLAVLYVFVTCHYLVRRGAV 131
           FAAPNT+ Q +VL+YSIAYF +DLLH  LF P++FVFI HHLAVLYVFVTC+Y+V  GAV
Sbjct: 65  FAAPNTKFQALVLEYSIAYFSLDLLHCLLFSPNDFVFIFHHLAVLYVFVTCNYIVGCGAV 124

Query: 132 AILVLLVLAELSSACQNAWTLAGYRRTDVAAAAKFQDFVAPYFYTLYSILRGGLAPVFLH 191
            IL LLV+AELSS CQNAWTLAGYRRT++ AAAKF++FVAPYF T YS+LR GLAPV + 
Sbjct: 125 PILGLLVVAELSSGCQNAWTLAGYRRTEMVAAAKFEEFVAPYFLTFYSVLRVGLAPVVVC 184

Query: 192 KMGEFYVG----AENLIPMWAWISWMGVIGTAIFVSILWVGNHWVLWY 236
           KMGEFYVG    + NLIP WAWISWM VIG AIF S+LWVGNHW+LW+
Sbjct: 185 KMGEFYVGSLGMSGNLIPTWAWISWMCVIGLAIFGSVLWVGNHWLLWF 232

[Close]

BLAST of Sed0006825 vs. ExPASy TrEMBL
Match: A0A5A7SSM3 (TLC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002050 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 3.6e-84
Identity = 164/235 (69.79%), Postives = 193/235 (82.13%), Query Frame = 0


Query: 12  LPLFFLMFLFVYLFAYYVVLRTWGPKHRLEASSCIISLAHGSPVVFMAIVANLRAPNMFD 71
           LPLFF MFLFVY FAY V+LR WGPKHRLEASSC ISLAHG+PVV +A +A L++PN  D
Sbjct: 5   LPLFFSMFLFVYTFAYSVLLRNWGPKHRLEASSCFISLAHGTPVVILATIAILQSPNPTD 64

Query: 72  FAAPNTELQGIVLQYSIAYFLVDLLHYALFYPHNFVFIAHHLAVLYVFVTCHYLVRRGAV 131
           FAAPNT+ Q +VL+YSIAYF +DLLH   F P++FVFI HHLAVLYVFVTC+Y+V  GAV
Sbjct: 65  FAAPNTKFQALVLEYSIAYFSLDLLHCVSFSPNDFVFIFHHLAVLYVFVTCNYIVGCGAV 124

Query: 132 AILVLLVLAELSSACQNAWTLAGYRRTDVAAAAKFQDFVAPYFYTLYSILRGGLAPVFLH 191
            IL LLV+AELSS CQNAWTLAGYRRT++ AAAKF++FV PYF T YS+LR GLAPV + 
Sbjct: 125 PILGLLVVAELSSGCQNAWTLAGYRRTEIVAAAKFEEFVTPYFLTFYSVLRVGLAPVVVC 184

Query: 192 KMGEFYVG----AENLIPMWAWISWMGVIGTAIFVSILWVGNHWVLWYQYRKHGK 243
           KMGEFYVG    + NLIP WAWISW+ VIG AIF S+LWVGNHW+LW++  ++ K
Sbjct: 185 KMGEFYVGSLVMSGNLIPTWAWISWLCVIGMAIFGSVLWVGNHWLLWFRPTQNRK 239

[Close]

BLAST of Sed0006825 vs. TAIR 10
Match: AT5G14280.1 (DNA-binding storekeeper protein-related )

HSP 1 Score: 233.0 bits (593), Expect = 2.5e-61
Identity = 126/240 (52.50%), Postives = 161/240 (67.08%), Query Frame = 0


Query: 7   LDCPSLPLFFLMFLFVYLFAYYVVLRTWGPKHRLEASSCIISLAHGSPVVFMAIVANLRA 66
           +  P LP+FF MFL +YL AY++V R W P+ R EASSC+IS+ HGSP VF+A  A   +
Sbjct: 326 ISIPDLPIFFSMFLTIYLIAYFIVFRNWKPQIRPEASSCLISIFHGSPAVFLATRAVFSS 385

Query: 67  PNMFDFAAPNTELQGIVLQYSIAYFLVDLLHYALFYPHNFVFIAHHLAVLYVFVTCHYLV 126
                FA+ NT  Q  VL +S+AYFL DL HY +F P++ +FI HH+A L+VF+TC +LV
Sbjct: 386 SER-SFASANTAAQNTVLDFSVAYFLTDLFHYIVFNPNDVLFIGHHVATLFVFLTCRFLV 445

Query: 127 RRGAVAILVLLVLAELSSACQNAWTLAGYRRTDVAA--AAKFQDFVAPYFYTLYSILRGG 186
             GA AIL LL+LAE++SACQNAWTLAG R+ D  +  A K  D ++P FY  YSI+RG 
Sbjct: 446 FHGACAILGLLILAEVTSACQNAWTLAGARKNDPESRLAVKVYDLLSPPFYAFYSIVRGV 505

Query: 187 LAPVFLHKMGEFYV--GAENLIPMWAWISWMGVIGTAIFVSILWVGNHWVLWYQYRKHGK 243
           L P+F  KM  FY   GA  +IP W WISW  V+G AI VSILW+ N W+  +  RK  K
Sbjct: 506 LGPLFFGKMVAFYARGGAHGVIPNWLWISWAIVVGIAITVSILWIWNLWIELFSERKANK 564

[Close]

BLAST of Sed0006825 vs. TAIR 10
Match: AT3G25950.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein )

HSP 1 Score: 220.3 bits (560), Expect = 1.7e-57
Identity = 114/236 (48.31%), Postives = 158/236 (66.95%), Query Frame = 0


Query: 11  SLPLFFLMFLFVYLFAYYVVLRTWGPKHRLEASSCIISLAHGSPVVFMAIVANLRAP--N 70
           + P F L+FL VY   Y++V RTW     L A SC++SL HG+P V MA  A L  P  +
Sbjct: 14  TFPSFLLLFLAVYTIGYFLVFRTWKQSSHLGA-SCLMSLFHGTPAVIMASHALLTTPRAD 73

Query: 71  MFDFAAPNTELQGIVLQYSIAYFLVDLLHYALFYPHNFVFIAHHLAVLYVFVTCHYLVRR 130
           +  FA+PNT ++  VL +S+AYF VDLLHY +F P++F+FI HH+A LYVF TC + V  
Sbjct: 74  VHSFASPNTAVESNVLDFSMAYFTVDLLHYLIFLPNDFIFILHHIATLYVFATCRFAVGH 133

Query: 131 GAVAILVLLVLAELSSACQNAWTLAGYRRTDVAAAAKFQDFVAPYFYTLYSILRGGLAPV 190
           GA  +L+LL+LAE +SACQN WT+ GYR+ DVA A + ++ ++P FY  Y+++RG   PV
Sbjct: 134 GAHGLLLLLILAEATSACQNVWTITGYRKNDVALARRVRELLSPPFYLFYTVVRGLAGPV 193

Query: 191 FLHKMGEFY--VGAENLIPMWAWISWMGVIGTAIFVSILWVGNHWVLWYQYRKHGK 243
            L+ M  FY    A+ ++P WAW+SW+ VIG AI VSILWV  +W+ W++     K
Sbjct: 194 VLYDMATFYGSGAADGVVPRWAWLSWLVVIGFAILVSILWVLRNWLDWFRENNSSK 248

[Close]

BLAST of Sed0006825 vs. TAIR 10
Match: AT3G27270.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein )

HSP 1 Score: 201.1 bits (510), Expect = 1.1e-51
Identity = 117/232 (50.43%), Postives = 150/232 (64.66%), Query Frame = 0


Query: 12  LPLFFLMFLFVYLFAYYVVLRTWGPKHRLEASSCIISLAHGSPVVFMAIVANLRAPNMFD 71
           LPLFF +F+FVYL  Y  + + W P+ R  ASSC+ISL HG   V +A  A L  PN   
Sbjct: 10  LPLFFSIFIFVYLLGYLFIFKKWTPETRPLASSCLISLLHGVSAVVLATNALLSDPNR-G 69

Query: 72  FAAPNTELQGIVLQYSIAYFLVDLLHYALF---YPHNFVFIAHHLAVLYVFVTCHYLVRR 131
           F++ NT+ Q  +L +S AYFL DL+H A+F      + +F AHHLAVL+VF+TC Y+V  
Sbjct: 70  FSSVNTQSQNSILDFSSAYFLADLVHLAVFPSPAGGDSLFAAHHLAVLFVFLTCRYMVAH 129

Query: 132 GAVAILVLLVLAELSSACQNAWTLAGYRRTDVAAAAKFQDFVAPYFYTLYSILRGGLAPV 191
           GA A+L LLV+AE +SACQN WTLA  R  D   A     FV   FY  YS+ R  LAP+
Sbjct: 130 GACALLALLVVAEATSACQNTWTLADARGKDAPLAVSLHRFVTVPFYASYSVCRCVLAPL 189

Query: 192 FLHKMGEFYV--GAENLIPMWAWISWMGVIGTAIFVSILWVGNHWVLWYQYR 239
            + KM  FYV  GA+++IP W W+SW  VI TA+ VSILW+ N WVL++Q R
Sbjct: 190 LIVKMTWFYVSGGADDVIPRWVWVSWTVVIVTAVTVSILWIWNLWVLFFQER 240

The following BLAST results are available for this feature:

BLAST of Sed0006825 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023554709.1	1.8e-101	80.51	TLC domain-containing protein At5g14285-like [Cucurbita pepo subsp. pepo]	[more]
XP_022998555.1	1.5e-100	77.73	TLC domain-containing protein At5g14285-like [Cucurbita maxima]	[more]
XP_022956623.1	1.5e-100	77.73	TLC domain-containing protein At5g14285-like [Cucurbita moschata]	[more]
KAG6601580.1	1.5e-100	80.43	TLC domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia] >...	[more]
XP_022151969.1	1.5e-92	72.95	TLC domain-containing protein At5g14285-like [Momordica charantia]	[more]

BLAST of Sed0006825 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYK7	3.5e-60	52.50	TLC domain-containing protein At5g14285 OS=Arabidopsis thaliana OX=3702 GN=At5g1...	[more]

BLAST of Sed0006825 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KCU9	7.3e-101	77.73	TLC domain-containing protein At5g14285-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1GXG9	7.3e-101	77.73	TLC domain-containing protein At5g14285-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1DEM0	7.3e-93	72.95	TLC domain-containing protein At5g14285-like OS=Momordica charantia OX=3673 GN=L...	[more]
A0A0A0KVB7	5.6e-85	72.81	TLC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G590130 PE=4 SV...	[more]
A0A5A7SSM3	3.6e-84	69.79	TLC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of Sed0006825 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14280.1	2.5e-61	52.50	DNA-binding storekeeper protein-related	[more]
AT3G25950.1	1.7e-57	48.31	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]
AT3G27270.1	1.1e-51	50.43	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006634	TRAM/LAG1/CLN8 homology domain	SMART	SM00724	lag1_27	coord: 37..239 e-value: 1.3E-21 score: 87.8
IPR006634	TRAM/LAG1/CLN8 homology domain	PROSITE	PS50922	TLC	coord: 37..225 score: 8.246761
None	No IPR available	PANTHER	PTHR31766:SF8	TRAM, LAG1 AND CLN8 (TLC) LIPID-SENSING DOMAIN CONTAINING PROTEIN	coord: 6..240
IPR040327	TLC domain-containing protein At5g14285-like	PANTHER	PTHR31766	GLABROUS1 ENHANCER-BINDING PROTEIN-LIKE 2	coord: 6..240

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006825.1	Sed0006825.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane