ClCG05G013490 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G013490
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	zf-RVT domain-containing protein
Location	CG_Chr05: 19315310 .. 19316724 (+)
RNA-Seq Expression	ClCG05G013490
Synteny	ClCG05G013490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTCTAGTATTCATGGTACTGATGTATTTGATTGGCACACTCTTGGAAAGCATCAAGCCTTCGAACCCCTGGATATATCTCAATCTTGGAAATCTGTGGATACGTTTGCTCCTTTCTCCTTAAAATCTGGTACAAGAATCCTGTTTTGGCATCATTTGTGGCTCGGTTCAGAGGTTTTAAAAGACAAATTCTCTCGTCTTTTTCGGCTATCCACTTTGCCAAATGGGGCTGTTAGTGATTTTTGGGATGCTATTGTTCTGCTTGGCAGATGACTAGGAGACTTTTAAAAGATGATGAAATTTCAGGCTTTGTCGCTCTCATGGAAGATCTTTCATCGGTTTCAGTTAGTGTTGGGACTGACTCCAGAATTTGGAATTTGGAAGCACCAAGCTCATTTACAGTTAAATCCCTTTCTTGCAAATTAAGATCCTCTTCTCCTTTGACAAAAGGGATTTACAAGGCTTTATGGCATTCAGGTTGTCCTTTAAGGGTTTCCATATTATCCTGGATTCTCTTGAATAGTAGTCTCAACACACCGGATGTTCTTCAGAAGAAATTAGCTACTTCATGCCTTCAACCCTCAGTTTGCTTCCTTTGTCATTTGAATGTGGAAAGCTATAATTGTGTGTTTTTGACCTATCCTTTCTCGTACAAATGCTGGAGCAAGCTTCTTAATTCCTTCAGATTTTCATGGGTTTTTGACTCAAATGTTAAAAACAATGTGCTTCAGCTACTTGAGGGTCCTCTTTCAGTGAAGCGACACCTTATTTGGGTTAATGCAGTAAAAGCTTTGCTTTCAGGTCTATGGATAGAAAGAAACCTAAGAATTTTTTAAGAAAAGTGTTGTTCCAGCTCATATATCTTTGCCACAGCTCATCTCAACGCTTCTTTTTGGTGCTCTCTTACTACAATATTTGTTGGATACTTTTCCCAAGACGTCAGTCTTAATTGGCCAGCCTTCCTCTTCCTCTTTCCTTATTAGTTCAACTTTTGTACTCGTTATAATTATGCATTTTATGTTGTTGAATCTTTTATGATTATGCTTGATTATTGAAACTGTACTGCATTTACATTTTTTCCTGTGTGGAGTTTTGTATCTATTGAGCATTAGTCTCTCTTTTCATTCAATCATTAAAAAGTTATGTCATGTTAAAAAAAAATGTGTATTTAATGTTGAATCAAAGTCCAGAAAGACAGATGACTCTGTTATTGGTTATGAGGAAGTCTTCCGGGCTGAAATAATGAATTGAAAAGGTAATTCACTGTAATTCAAAAGCCGGAACTTCTTGGTTTAATGCAATATTAACGGTATCACAAAAACAGATCCAAGCTTGAATTCCTACAATGTCAGTCTCTGTCTTCTCATTTTATATTCATAGCTTATGCATCAAGCCTCGAAAAGCAAAAGTAA

mRNA sequence

ATGATTTCTAGTATTCATGGTACTGATGTATTTGATTGGCACACTCTTGGAAAGCATCAAGCCTTCGAACCCCTGGATATATCTCAATCTTGGAAATCTGTGGATACGTTTGCTCCTTTCTCCTTAAAATCTGGTACAAGAATCCTGTTTTGGCATCATTTGTGGCTCGGTTCAGAGGTTTTAAAAGACAAATTCTCTCGTCTTTTTCGGCTATCCACTTTGCCAAATGGGGCTGTTAGTGATTTTTGGGATGCTATTATGACTAGGAGACTTTTAAAAGATGATGAAATTTCAGGCTTTGTCGCTCTCATGGAAGATCTTTCATCGGTTTCAGTTAGTGTTGGGACTGACTCCAGAATTTGGAATTTGGAAGCACCAAGCTCATTTACAGTTAAATCCCTTTCTTGCAAATTAAGATCCTCTTCTCCTTTGACAAAAGGGATTTACAAGGCTTTATGGCATTCAGCTTATGCATCAAGCCTCGAAAAGCAAAAGTAA

Coding sequence (CDS)

ATGATTTCTAGTATTCATGGTACTGATGTATTTGATTGGCACACTCTTGGAAAGCATCAAGCCTTCGAACCCCTGGATATATCTCAATCTTGGAAATCTGTGGATACGTTTGCTCCTTTCTCCTTAAAATCTGGTACAAGAATCCTGTTTTGGCATCATTTGTGGCTCGGTTCAGAGGTTTTAAAAGACAAATTCTCTCGTCTTTTTCGGCTATCCACTTTGCCAAATGGGGCTGTTAGTGATTTTTGGGATGCTATTATGACTAGGAGACTTTTAAAAGATGATGAAATTTCAGGCTTTGTCGCTCTCATGGAAGATCTTTCATCGGTTTCAGTTAGTGTTGGGACTGACTCCAGAATTTGGAATTTGGAAGCACCAAGCTCATTTACAGTTAAATCCCTTTCTTGCAAATTAAGATCCTCTTCTCCTTTGACAAAAGGGATTTACAAGGCTTTATGGCATTCAGCTTATGCATCAAGCCTCGAAAAGCAAAAGTAA

Protein sequence

MISSIHGTDVFDWHTLGKHQAFEPLDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWDAIMTRRLLKDDEISGFVALMEDLSSVSVSVGTDSRIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYKALWHSAYASSLEKQK

Homology

[Close]

BLAST of ClCG05G013490 vs. NCBI nr
Match: TYK22579.1 (hypothetical protein E5676_scaffold584G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 3.7e-26
Identity = 73/165 (44.24%), Postives = 101/165 (61.21%), Query Frame = 0


Query: 1   MISSIHGTDVFDWHTLGK--HQAFEP-LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLG 60
           +I SIHG++ FDWHT  K  +    P + IS+ WK V+  APF L +G R+ FW   W  
Sbjct: 11  VIRSIHGSETFDWHTQSKSGNSLRSPWVSISREWKKVEILAPFKLGNGRRVAFWADSWAR 70

Query: 61  SEVLKDKFSRLFRLSTLPNGAVSDFWD------AIMTRRLLKDDEISGFVALMEDLSSVS 120
              LK + S+LF+++ LP G+V+  WD      AI+ RRLLKD+EI  F +L+  LSS  
Sbjct: 71  EIPLKTQNSKLFKIALLPIGSVAAHWDSDTNSWAIVFRRLLKDEEIQDFQSLLL-LSSRR 130

Query: 121 VSVGTDSRIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYKALWHSA 157
           ++   D RIW+L+A   ++VKSLS  L  S PL K  YKALW ++
Sbjct: 131 MAELEDGRIWSLDALGHYSVKSLSTHLSPSCPLEKACYKALWKTS 174

[Close]

BLAST of ClCG05G013490 vs. NCBI nr
Match: XP_022155195.1 (uncharacterized protein LOC111022333 [Momordica charantia])

HSP 1 Score: 119.4 bits (298), Expect = 2.9e-23
Identity = 64/137 (46.72%), Postives = 89/137 (64.96%), Query Frame = 0


Query: 25  LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWD 84
           ++IS+ W   + FA F L SG  ILFW H W+ ++ LKD+FS+++++ST P+G+V +FWD
Sbjct: 11  INISRQWSHWNQFAGFKLGSGDSILFWTHEWIENQPLKDRFSKIYQISTNPSGSVVEFWD 70

Query: 85  A------IMTRRLLKDDEISGFVALMEDLSSVSVSVGTDSRIWNLEAPSSFTVKSLSCKL 144
           A      I TRR LKDDEI  F  L+  L S S S   D R+W+LE    F+V S+S KL
Sbjct: 71  AQTLSWRISTRRALKDDEIEEFSVLLYLLHSHSPSNELDRRLWSLEPSGMFSVASIS-KL 130

Query: 145 RSSSPLTKGIYKALWHS 156
            S+S L K ++KA+W S
Sbjct: 131 CSASSLPKALFKAIWKS 146

[Close]

BLAST of ClCG05G013490 vs. NCBI nr
Match: TYK06564.1 (hypothetical protein E5676_scaffold453G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 8.0e-21
Identity = 62/159 (38.99%), Postives = 90/159 (56.60%), Query Frame = 0


Query: 1   MISSIHGTDVFDWHTLGK--HQAFEP-LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLG 60
           ++ SI+G +   WHT+GK  +    P + IS   + ++T   F L +G RI FW  +W+ 
Sbjct: 83  VVRSIYGKESCSWHTIGKFGNSLKSPWIGISMVRRKLETLTSFKLGNGNRIAFWSDVWVE 142

Query: 61  SEVLKDKFSRLFRLSTLPNGAVSDFWD------AIMTRRLLKDDEISGFVALMEDLSSVS 120
               +  FS LFR+S +PNG+V+  WD      +IM RRL K++EIS F  L+  LS+  
Sbjct: 143 ETSFRTCFSMLFRVSLMPNGSVAALWDNSTLSWSIMFRRLFKEEEISEFQQLLHLLSNRQ 202

Query: 121 VSVGTDSRIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYK 151
           V+   D R W+L+  S F+ KS    L  SSPL +G YK
Sbjct: 203 VADSMDRRFWSLDPSSRFSAKSFVNHLAVSSPLNRGTYK 241

[Close]

BLAST of ClCG05G013490 vs. NCBI nr
Match: XP_038903695.1 (uncharacterized protein LOC120090219 [Benincasa hispida])

HSP 1 Score: 110.2 bits (274), Expect = 1.8e-20
Identity = 57/135 (42.22%), Postives = 79/135 (58.52%), Query Frame = 0


Query: 25  LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWD 84
           + IS++W  V+  A F L +G+RI FW   W G       FS LFR++TLPNG+V+D WD
Sbjct: 14  VSISKTWLKVEILATFKLGNGSRIAFWLDTWEGHSPFNILFSSLFRITTLPNGSVADHWD 73

Query: 85  ------AIMTRRLLKDDEISGFVALMEDLSSVSVSVGTDSRIWNLEAPSSFTVKSLSCKL 144
                 +I  RR LKD+E+S F  L+  + S S S+  D R+W++   S +TVKSL   L
Sbjct: 74  NNIASWSITFRRSLKDEEVSAFQDLLRKIVSRSPSLSFDKRVWSISNNSQYTVKSLKNHL 133

Query: 145 RSSSPLTKGIYKALW 154
              SPL K I+  +W
Sbjct: 134 TPFSPLEKPIFSTIW 148

[Close]

BLAST of ClCG05G013490 vs. NCBI nr
Match: KAA0035739.1 (hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 5.7e-19
Identity = 60/158 (37.97%), Postives = 97/158 (61.39%), Query Frame = 0


Query: 1   MISSIHGTDVFDWHTLGK--HQAFEP-LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLG 60
           +I SIHG + FDW T GK  +    P ++I++ W+ VD+ A F+L +G RI F    W+G
Sbjct: 63  VIRSIHGKEAFDWFTKGKSGNSLRSPWVNIARFWRLVDSLASFNLGNGLRIGFRIDPWVG 122

Query: 61  SEVLKDKFSRLFRLSTLPNGAVSDFWDAIMTRRLLKDDEISGFVALMEDLSSVSVSVGTD 120
           +  +K++FSRLFR++  P  +   F   +  RR L+D+EI+ F +L+  LS+  V    D
Sbjct: 123 NTPIKEQFSRLFRIALWPRCSFLFFSWPLAFRRSLEDEEITEFQSLLFLLSTEKVVNSDD 182

Query: 121 SRIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYKALWHS 156
            R W++E+   F+ KSLS  L+++SP+ K ++ A+  S
Sbjct: 183 FRSWSIESHGRFSDKSLSTHLKTASPMDKRLFSAILQS 220

[Close]

BLAST of ClCG05G013490 vs. ExPASy TrEMBL
Match: A0A5D3DH32 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold584G00340 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.8e-26
Identity = 73/165 (44.24%), Postives = 101/165 (61.21%), Query Frame = 0


Query: 1   MISSIHGTDVFDWHTLGK--HQAFEP-LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLG 60
           +I SIHG++ FDWHT  K  +    P + IS+ WK V+  APF L +G R+ FW   W  
Sbjct: 11  VIRSIHGSETFDWHTQSKSGNSLRSPWVSISREWKKVEILAPFKLGNGRRVAFWADSWAR 70

Query: 61  SEVLKDKFSRLFRLSTLPNGAVSDFWD------AIMTRRLLKDDEISGFVALMEDLSSVS 120
              LK + S+LF+++ LP G+V+  WD      AI+ RRLLKD+EI  F +L+  LSS  
Sbjct: 71  EIPLKTQNSKLFKIALLPIGSVAAHWDSDTNSWAIVFRRLLKDEEIQDFQSLLL-LSSRR 130

Query: 121 VSVGTDSRIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYKALWHSA 157
           ++   D RIW+L+A   ++VKSLS  L  S PL K  YKALW ++
Sbjct: 131 MAELEDGRIWSLDALGHYSVKSLSTHLSPSCPLEKACYKALWKTS 174

[Close]

BLAST of ClCG05G013490 vs. ExPASy TrEMBL
Match: A0A6J1DLR8 (uncharacterized protein LOC111022333 OS=Momordica charantia OX=3673 GN=LOC111022333 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.4e-23
Identity = 64/137 (46.72%), Postives = 89/137 (64.96%), Query Frame = 0


Query: 25  LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLGSEVLKDKFSRLFRLSTLPNGAVSDFWD 84
           ++IS+ W   + FA F L SG  ILFW H W+ ++ LKD+FS+++++ST P+G+V +FWD
Sbjct: 11  INISRQWSHWNQFAGFKLGSGDSILFWTHEWIENQPLKDRFSKIYQISTNPSGSVVEFWD 70

Query: 85  A------IMTRRLLKDDEISGFVALMEDLSSVSVSVGTDSRIWNLEAPSSFTVKSLSCKL 144
           A      I TRR LKDDEI  F  L+  L S S S   D R+W+LE    F+V S+S KL
Sbjct: 71  AQTLSWRISTRRALKDDEIEEFSVLLYLLHSHSPSNELDRRLWSLEPSGMFSVASIS-KL 130

Query: 145 RSSSPLTKGIYKALWHS 156
            S+S L K ++KA+W S
Sbjct: 131 CSASSLPKALFKAIWKS 146

[Close]

BLAST of ClCG05G013490 vs. ExPASy TrEMBL
Match: A0A5D3C5F2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00250 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.9e-21
Identity = 62/159 (38.99%), Postives = 90/159 (56.60%), Query Frame = 0


Query: 1   MISSIHGTDVFDWHTLGK--HQAFEP-LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLG 60
           ++ SI+G +   WHT+GK  +    P + IS   + ++T   F L +G RI FW  +W+ 
Sbjct: 83  VVRSIYGKESCSWHTIGKFGNSLKSPWIGISMVRRKLETLTSFKLGNGNRIAFWSDVWVE 142

Query: 61  SEVLKDKFSRLFRLSTLPNGAVSDFWD------AIMTRRLLKDDEISGFVALMEDLSSVS 120
               +  FS LFR+S +PNG+V+  WD      +IM RRL K++EIS F  L+  LS+  
Sbjct: 143 ETSFRTCFSMLFRVSLMPNGSVAALWDNSTLSWSIMFRRLFKEEEISEFQQLLHLLSNRQ 202

Query: 121 VSVGTDSRIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYK 151
           V+   D R W+L+  S F+ KS    L  SSPL +G YK
Sbjct: 203 VADSMDRRFWSLDPSSRFSAKSFVNHLAVSSPLNRGTYK 241

[Close]

BLAST of ClCG05G013490 vs. ExPASy TrEMBL
Match: A0A5A7T2Y0 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00100 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.8e-19
Identity = 60/158 (37.97%), Postives = 97/158 (61.39%), Query Frame = 0


Query: 1   MISSIHGTDVFDWHTLGK--HQAFEP-LDISQSWKSVDTFAPFSLKSGTRILFWHHLWLG 60
           +I SIHG + FDW T GK  +    P ++I++ W+ VD+ A F+L +G RI F    W+G
Sbjct: 63  VIRSIHGKEAFDWFTKGKSGNSLRSPWVNIARFWRLVDSLASFNLGNGLRIGFRIDPWVG 122

Query: 61  SEVLKDKFSRLFRLSTLPNGAVSDFWDAIMTRRLLKDDEISGFVALMEDLSSVSVSVGTD 120
           +  +K++FSRLFR++  P  +   F   +  RR L+D+EI+ F +L+  LS+  V    D
Sbjct: 123 NTPIKEQFSRLFRIALWPRCSFLFFSWPLAFRRSLEDEEITEFQSLLFLLSTEKVVNSDD 182

Query: 121 SRIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYKALWHS 156
            R W++E+   F+ KSLS  L+++SP+ K ++ A+  S
Sbjct: 183 FRSWSIESHGRFSDKSLSTHLKTASPMDKRLFSAILQS 220

[Close]

BLAST of ClCG05G013490 vs. ExPASy TrEMBL
Match: A0A5D3DE60 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00090 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.8e-18
Identity = 58/158 (36.71%), Postives = 93/158 (58.86%), Query Frame = 0


Query: 1   MISSIHGTDVFDWHTLGK---HQAFEPLDISQSWKSVDTFAPFSLKSGTRILFWHHLWLG 60
           +I SIHG + FDW T GK         ++I++ W+ VD+ A F+L +G RI F    W+G
Sbjct: 63  VIRSIHGKEAFDWFTKGKSGNSLRSHWVNIARFWRLVDSLASFNLGNGLRIGFRIDPWVG 122

Query: 61  SEVLKDKFSRLFRLSTLPNGAVSDFWDAIMTRRLLKDDEISGFVALMEDLSSVSVSVGTD 120
           +  +K++FSRLF ++  P      F   +  RR L+D+EI+ F +L+  LS+  V    D
Sbjct: 123 NTPIKEQFSRLFSIALWPRCYFLFFSWPLAFRRSLEDEEITEFQSLLFLLSTEKVVNSDD 182

Query: 121 SRIWNLEAPSSFTVKSLSCKLRSSSPLTKGIYKALWHS 156
            R W++E+   F+ KSLS  L+++SP+ K ++ A+  S
Sbjct: 183 FRSWSIESHGRFSDKSLSTHLKTASPMDKRLFSAILQS 220

The following BLAST results are available for this feature:

BLAST of ClCG05G013490 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK22579.1	3.7e-26	44.24	hypothetical protein E5676_scaffold584G00340 [Cucumis melo var. makuwa]	[more]
XP_022155195.1	2.9e-23	46.72	uncharacterized protein LOC111022333 [Momordica charantia]	[more]
TYK06564.1	8.0e-21	38.99	hypothetical protein E5676_scaffold453G00250 [Cucumis melo var. makuwa]	[more]
XP_038903695.1	1.8e-20	42.22	uncharacterized protein LOC120090219 [Benincasa hispida]	[more]
KAA0035739.1	5.7e-19	37.97	hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa]	[more]

BLAST of ClCG05G013490 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG05G013490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DH32	1.8e-26	44.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1DLR8	1.4e-23	46.72	uncharacterized protein LOC111022333 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5D3C5F2	3.9e-21	38.99	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T2Y0	2.8e-19	37.97	zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3DE60	6.8e-18	36.71	zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of ClCG05G013490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36617	PROTEIN, PUTATIVE-RELATED	coord: 25..144
None	No IPR available	PANTHER	PTHR36617:SF4	SUBFAMILY NOT NAMED	coord: 25..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G013490.1	ClCG05G013490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding