Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACAAACTCTCAATTTCTTCTTCATTTCTGTGTGTTTGTTTAAAGGTTCTATGAGGATCAGAAAACGCCAGATTCCATTACCCTTTTCCTCCCTTTCCCCTCTCTCAGATCCCGCCGCCCTCCTCCTCCTCCGCCGCCCGGTGCAACTCCGACGCCCCACCTCCGCCCTTCCCCCGCCGCCGGTTAGTATTCCAATCCAAACACACCCTTTTTGTCTTTTATTTTGTTTGCTAATCGGGATCTTGATTTGGGATTTTGTTCTAATTAAACTGCACCCCCCTCTCTTGTTATTTGGTCCCTCAAATTGTGTGTATTTGCATCCTTTACTCATATGGGGTTTTTGTTTGTGTACACTGCAGGAGCAACATCATCATCATCATGATACCACCAGGTAAAAACTCTCTCTAAGCCTCTGAGATCAATTTACAAAACCCCCTATTTCTCTTTTTAACACAAATTACACCCATCATTTAAAATAAAATAAAAAAATAAATGTATATGTTTATTTTCATTAATTAATTAATTAATTTATTTTTTATTTTTGTGAGTGGAAACACTGTGTGTGTGTTTGGATGTTTTTATTTATATATATATATATATATATATATATATATTTTTCATTTCTCTGCATGTTCTTTGCTGGTCCACTGCACCCCTCTTCTTCTTCTCCATTATCTCTCTCTCTCTCTCTCTTTAATCCACTTTTTTTTTTTTAATTAGTCTTTTCTCAACTTATTACTTTTCTTTTCTTATATTTCTCTGCATATTATTTGCACTAATATTATTTATTCACTCTTCATCTCTATATGTGTGTTGTGGGTTTGATTTTAGGGACATAAAGCTATTTGGTGCACAAACAAGCAATGGGGTTCTTCCACAATCCACCTCTAATTCACCTCAAGGTCTCATCATCGATCCCCCCCCCCCTTTTTTTATTCATCAAACTCATATTTACATTATCATTCTCACTTACATTTCCCTTAACGAATGTTAAATCATTTATCCAACAACTGCATAACTGAATCAGTCTGAACGGGTAGTTATTATCGAAAGATTATGAGTTCGAATGTCTAGTTACTGAAAAAATTGCACCACTCTCAAACTCAACCTTAGAGCTAGCTTTTGAATTCACATGTGGATTTACAATTATTGTTTGGCAGTCAAAACTTGAGTACATAATAATATATCAAAACTACAACATTATTCCCTATTCTCAAACTAGGTGTAATGTTATCTTCTTCTAAATTGATATTGATGATGGGCATACACACCGTCACTTATGAACTTATGTTGTTGGGTTTAGTATATGATTTATAACACGAATTAAAAAGAAGCAAGTTGTATTTGAATTCTCCTTGTCAAAAATTATTTGATCATATACTCAAAGTATATATTATATGTCCAACCAATATAATCTTTGTCATGCTTCTGTCTTCATCAAATATATTATTTTTGCTTTGATTCTTTGATGATCGAATATGCAATGCTACTTTGTATCATGGGTATCGTATAATGGTTAAAAATAGTCTTAAGAAACCAAAAATTTATGGGTTCAATCCACTTTGGTCACCTGCTTACTAATTCATTTTTTATGAATTTTCTTGACATCCAAATATCATAGAGTTAGTTAGACAATATATTGCGTGAAAATAGTCGAGATGCACATAAGCTAGTCCAAACATTCACAAATATCAATAAAAACAAAGACAAGTTAATATGTGTATTTTTTTAAACCATTATGAAGTGACGTAGGGGTCAAGAGGGTCTTGGAAACGAAGAGGCGATGTGTTCGTGGTAGGCACCTACCTGCATGCCCGGACAATCATGGATATCTGAAAATAAATAAATAGATGCATTTTTTTCAATCTATTCTCATGTTGGGATTTGTTTGTTTGTTGTAGTAATGGGGGAGTGGTGCGAGAGGGAGAAGGCATTTCCATTAAAGAAGAGGAGAGGGAGCTTTAAGAGGCCAAGTGACCATGGAGAAGATGAAGATCAAATGATCACCACAACAGTGAAGACAATGATGATCAACAACAAATGCCCATTGCCACAAAAGCAAGAACAACAAGAACATCAATCCAATCCGCCCGGTCTCAACCTCCCCGGTAAGAAGAAATCCAGAGGCGGCGTGTTGATGGAGGGATCTCGGTGCAGCCGCGTCAATGGAAGAGGATGGCGTTGCTGCCAACAGACTCTCGTCGGTTACTCTCTCTGTGAACATCACTTGGGAAAAGGTCGCCTCCGCAGCATGAACAGCGTCCGCAGCCGCTCCTTGGCTGCTACCGCACCGAAGAGTGTTGTCATTGTTGAGAAAGAAGATGAGAAGAAGCCATCGCCATCCCCACTGTCACCATTGATGGTAACTAGTAAGAAGAGAATGAAGCTCGGTGTGGTGAAAGCGAGGTCGATGAGCAGCTTACTCGGCCAACCCGATTGCACGATCGCAGCCGTGCCGCCTCCGCCTCTACCTCCAACACCGGAGGATGACAACATGGACTGAGTAAGGAAGCAATAATTTGTTACATAAGTGTGTGATCTCTGATCTCTCTTGGGTAATTTTCGGTTACTGTCTAAAGTTTTTAATTTTCATGGTTAATATGTTTGAAATTTTCAATTAGATTACTATGTAAAGAAATTGTCGAAAAGAAGTTGATACGTCGTTAAATTACTGTTTTATAATATATCTAGACATTTAGACATGTACTGTATTTCTACGTGTGAAATTCAGTCTGTCCATTAGTAAAATTTGAACTATTCGTGAA
mRNA sequence
CACAAACTCTCAATTTCTTCTTCATTTCTGTGTGTTTGTTTAAAGGTTCTATGAGGATCAGAAAACGCCAGATTCCATTACCCTTTTCCTCCCTTTCCCCTCTCTCAGATCCCGCCGCCCTCCTCCTCCTCCGCCGCCCGGTGCAACTCCGACGCCCCACCTCCGCCCTTCCCCCGCCGCCGGAGCAACATCATCATCATCATGATACCACCAGGGACATAAAGCTATTTGGTGCACAAACAAGCAATGGGGTTCTTCCACAATCCACCTCTAATTCACCTCAAGTAATGGGGGAGTGGTGCGAGAGGGAGAAGGCATTTCCATTAAAGAAGAGGAGAGGGAGCTTTAAGAGGCCAAGTGACCATGGAGAAGATGAAGATCAAATGATCACCACAACAGTGAAGACAATGATGATCAACAACAAATGCCCATTGCCACAAAAGCAAGAACAACAAGAACATCAATCCAATCCGCCCGGTCTCAACCTCCCCGGTAAGAAGAAATCCAGAGGCGGCGTGTTGATGGAGGGATCTCGGTGCAGCCGCGTCAATGGAAGAGGATGGCGTTGCTGCCAACAGACTCTCGTCGGTTACTCTCTCTGTGAACATCACTTGGGAAAAGGTCGCCTCCGCAGCATGAACAGCGTCCGCAGCCGCTCCTTGGCTGCTACCGCACCGAAGAGTGTTGTCATTGTTGAGAAAGAAGATGAGAAGAAGCCATCGCCATCCCCACTGTCACCATTGATGGTAACTAGTAAGAAGAGAATGAAGCTCGGTGTGGTGAAAGCGAGGTCGATGAGCAGCTTACTCGGCCAACCCGATTGCACGATCGCAGCCGTGCCGCCTCCGCCTCTACCTCCAACACCGGAGGATGACAACATGGACTGAGTAAGGAAGCAATAATTTGTTACATAAGTGTGTGATCTCTGATCTCTCTTGGGTAATTTTCGGTTACTGTCTAAAGTTTTTAATTTTCATGGTTAATATGTTTGAAATTTTCAATTAGATTACTATGTAAAGAAATTGTCGAAAAGAAGTTGATACGTCGTTAAATTACTGTTTTATAATATATCTAGACATTTAGACATGTACTGTATTTCTACGTGTGAAATTCAGTCTGTCCATTAGTAAAATTTGAACTATTCGTGAA
Coding sequence (CDS)
ATGAGGATCAGAAAACGCCAGATTCCATTACCCTTTTCCTCCCTTTCCCCTCTCTCAGATCCCGCCGCCCTCCTCCTCCTCCGCCGCCCGGTGCAACTCCGACGCCCCACCTCCGCCCTTCCCCCGCCGCCGGAGCAACATCATCATCATCATGATACCACCAGGGACATAAAGCTATTTGGTGCACAAACAAGCAATGGGGTTCTTCCACAATCCACCTCTAATTCACCTCAAGTAATGGGGGAGTGGTGCGAGAGGGAGAAGGCATTTCCATTAAAGAAGAGGAGAGGGAGCTTTAAGAGGCCAAGTGACCATGGAGAAGATGAAGATCAAATGATCACCACAACAGTGAAGACAATGATGATCAACAACAAATGCCCATTGCCACAAAAGCAAGAACAACAAGAACATCAATCCAATCCGCCCGGTCTCAACCTCCCCGGTAAGAAGAAATCCAGAGGCGGCGTGTTGATGGAGGGATCTCGGTGCAGCCGCGTCAATGGAAGAGGATGGCGTTGCTGCCAACAGACTCTCGTCGGTTACTCTCTCTGTGAACATCACTTGGGAAAAGGTCGCCTCCGCAGCATGAACAGCGTCCGCAGCCGCTCCTTGGCTGCTACCGCACCGAAGAGTGTTGTCATTGTTGAGAAAGAAGATGAGAAGAAGCCATCGCCATCCCCACTGTCACCATTGATGGTAACTAGTAAGAAGAGAATGAAGCTCGGTGTGGTGAAAGCGAGGTCGATGAGCAGCTTACTCGGCCAACCCGATTGCACGATCGCAGCCGTGCCGCCTCCGCCTCTACCTCCAACACCGGAGGATGACAACATGGACTGA
Protein sequence
MRIRKRQIPLPFSSLSPLSDPAALLLLRRPVQLRRPTSALPPPPEQHHHHHDTTRDIKLFGAQTSNGVLPQSTSNSPQVMGEWCEREKAFPLKKRRGSFKRPSDHGEDEDQMITTTVKTMMINNKCPLPQKQEQQEHQSNPPGLNLPGKKKSRGGVLMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRSLAATAPKSVVIVEKEDEKKPSPSPLSPLMVTSKKRMKLGVVKARSMSSLLGQPDCTIAAVPPPPLPPTPEDDNMD
Homology
BLAST of Sed0001893 vs. NCBI nr
Match:
XP_022930465.1 (uncharacterized protein LOC111436877 isoform X1 [Cucurbita moschata])
HSP 1 Score: 287.0 bits (733), Expect = 1.8e-73
Identity = 175/283 (61.84%), Postives = 193/283 (68.20%), Query Frame = 0
Query: 1 MRIRKRQIPLPFSSLS---PLSDPAALLLLRRPVQLRRPTSALPPPPEQHHHHHDTTRDI 60
MRIRKRQ+PLP + S P+SDP L P PT + P EQ H D TR+
Sbjct: 1 MRIRKRQLPLPLAFSSGPRPVSDP---LHAHAP-----PTVSNPMEKEQQEHIEDNTRER 60
Query: 61 KLFGAQTSNGVLPQSTSNSPQVMGEWCEREKAFPLKKRRGSFKRPSDHGEDEDQMITTTV 120
F A+TSNGV+PQSTS SPQV+G W ERE+ FPLKKRR DH
Sbjct: 61 CEFDAETSNGVVPQSTS-SPQVVGRWGEREREFPLKKRRS-----DDH------------ 120
Query: 121 KTMMINNKCPLPQKQEQQEHQSNPPGLNLPGKKKSRGGVLMEGSRCSRVNGRGWRCCQQT 180
NN K++Q+EHQS GLNL GK+KSRGG LMEGSRCSRVNGRGWRCCQQT
Sbjct: 121 -----NNNGNKKMKKKQEEHQSK-MGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQT 180
Query: 181 LVGYSLCEHHLGKGRLRSMNSVRSRSLAATAPKSVVIVEKEDEKK--PSPSPLSPLMVTS 240
LVGYSLCEHHLGKGRLRSMNSVRSRS AAT +VEKED KK PSPSP PL +TS
Sbjct: 181 LVGYSLCEHHLGKGRLRSMNSVRSRSSAAT------VVEKEDNKKPSPSPSPRPPLTLTS 240
Query: 241 KKRMKLGVVKARSMSSLLGQPDCTIAAVPPPPLPPTPEDDNMD 279
KKR KLGVVKARS+SSLLGQPD +A PPPPLPPTP DDN+D
Sbjct: 241 KKRTKLGVVKARSISSLLGQPDSVMALAPPPPLPPTPPDDNID 245
BLAST of Sed0001893 vs. NCBI nr
Match:
XP_038903168.1 (uncharacterized protein LOC120089834 [Benincasa hispida])
HSP 1 Score: 286.6 bits (732), Expect = 2.3e-73
Identity = 178/309 (57.61%), Postives = 210/309 (67.96%), Query Frame = 0
Query: 1 MRIRKRQIPLPFSSLSPLSDPAALLLLRRPVQLRRPTSALPP-----------PPEQHHH 60
MRIRKRQ+PLPFSS LSDP LLR ++ P S+ PP Q H
Sbjct: 1 MRIRKRQLPLPFSS---LSDP----LLRHSPPVQLPPSSDPPNLHPFPSDNASDNNQKLH 60
Query: 61 HHDTTRDIKLFGAQT-SNGVLPQSTSNSPQVMGEWCEREKAFPLKKRRGSFKRPS----- 120
HD +R + GA+T +NGVLP STS+S Q G WCEREKAFPLKKRRGSF+R +
Sbjct: 61 QHD-SRKTTVIGAETINNGVLPLSTSSSSQGGGRWCEREKAFPLKKRRGSFERSNNDQDD 120
Query: 121 ---DHGEDEDQMITTTVKTMMINNKCPLPQKQEQQEHQSNPP----GLNLPGKKKSRGGV 180
D E++DQ++TT+ ++ + K + K ++ S+ GL+L GKK+SRGG
Sbjct: 121 NDEDDDEEDDQVVTTSTVKLLPDEKKTMKTKMNKKSTLSSQKQTKLGLDLVGKKRSRGGA 180
Query: 181 LMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRSL-AATAPKSVVIV 240
LMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMN+VRSRSL AATA V+V
Sbjct: 181 LMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRSRSLAAATATPKNVVV 240
Query: 241 EKEDEKKPSPSPL-----SPLMVTSKKRMKLGVVKARSMSSLLGQPDCTIAA-VPPPPLP 279
+ EDEKKPSPSP S L + SKKRMKLGVVKARS+SSLLGQPD +A PPPP P
Sbjct: 241 DVEDEKKPSPSPFPAPPSSSLTLASKKRMKLGVVKARSISSLLGQPDGMVATPPPPPPPP 300
BLAST of Sed0001893 vs. NCBI nr
Match:
XP_023521667.1 (uncharacterized protein LOC111785505 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 284.6 bits (727), Expect = 8.9e-73
Identity = 173/283 (61.13%), Postives = 189/283 (66.78%), Query Frame = 0
Query: 1 MRIRKRQIPLPFSSLS---PLSDPAALLLLRRPVQLRRPTSALPPPPEQHHHHHDTTRDI 60
MRIRKRQ+PLP + S P+SDP L A P EQ H D TR+
Sbjct: 1 MRIRKRQLPLPLAFSSGPRPVSDP-----------LHAHAHAPPMEKEQQEHIEDNTRER 60
Query: 61 KLFGAQTSNGVLPQSTSNSPQVMGEWCEREKAFPLKKRRGSFKRPSDHGEDEDQMITTTV 120
F A+TSNGVLPQSTS SPQV+G W ERE+ FPLKKRR DH
Sbjct: 61 CEFDAETSNGVLPQSTS-SPQVVGRWGEREREFPLKKRRS-----DDH------------ 120
Query: 121 KTMMINNKCPLPQKQEQQEHQSNPPGLNLPGKKKSRGGVLMEGSRCSRVNGRGWRCCQQT 180
NN K++Q+EHQS GLNL GK+KSRGG LMEGSRCSRVNGRGWRCCQQT
Sbjct: 121 -----NNNGNKKMKKKQEEHQSK-MGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQT 180
Query: 181 LVGYSLCEHHLGKGRLRSMNSVRSRSLAATAPKSVVIVEKEDEKK--PSPSPLSPLMVTS 240
LVGYSLCEHHLGKGRLRSMNSVRSRS AT +VEKED KK PSPSP PL +TS
Sbjct: 181 LVGYSLCEHHLGKGRLRSMNSVRSRSSPAT------VVEKEDNKKPSPSPSPRPPLTLTS 240
Query: 241 KKRMKLGVVKARSMSSLLGQPDCTIAAVPPPPLPPTPEDDNMD 279
KKR KLGVVKARS+SSLLGQPD +A PPPPLPPTP DDN+D
Sbjct: 241 KKRTKLGVVKARSISSLLGQPDGVMAVAPPPPLPPTPPDDNID 242
BLAST of Sed0001893 vs. NCBI nr
Match:
XP_022930542.1 (uncharacterized protein LOC111436877 isoform X2 [Cucurbita moschata])
HSP 1 Score: 284.3 bits (726), Expect = 1.2e-72
Identity = 172/283 (60.78%), Postives = 189/283 (66.78%), Query Frame = 0
Query: 1 MRIRKRQIPLPFSSLS---PLSDPAALLLLRRPVQLRRPTSALPPPPEQHHHHHDTTRDI 60
MRIRKRQ+PLP + S P+SDP A P EQ H D TR+
Sbjct: 1 MRIRKRQLPLPLAFSSGPRPVSDPL-------------HAHAPPTEKEQQEHIEDNTRER 60
Query: 61 KLFGAQTSNGVLPQSTSNSPQVMGEWCEREKAFPLKKRRGSFKRPSDHGEDEDQMITTTV 120
F A+TSNGV+PQSTS SPQV+G W ERE+ FPLKKRR DH
Sbjct: 61 CEFDAETSNGVVPQSTS-SPQVVGRWGEREREFPLKKRRS-----DDH------------ 120
Query: 121 KTMMINNKCPLPQKQEQQEHQSNPPGLNLPGKKKSRGGVLMEGSRCSRVNGRGWRCCQQT 180
NN K++Q+EHQS GLNL GK+KSRGG LMEGSRCSRVNGRGWRCCQQT
Sbjct: 121 -----NNNGNKKMKKKQEEHQSK-MGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQT 180
Query: 181 LVGYSLCEHHLGKGRLRSMNSVRSRSLAATAPKSVVIVEKEDEKK--PSPSPLSPLMVTS 240
LVGYSLCEHHLGKGRLRSMNSVRSRS AAT +VEKED KK PSPSP PL +TS
Sbjct: 181 LVGYSLCEHHLGKGRLRSMNSVRSRSSAAT------VVEKEDNKKPSPSPSPRPPLTLTS 240
Query: 241 KKRMKLGVVKARSMSSLLGQPDCTIAAVPPPPLPPTPEDDNMD 279
KKR KLGVVKARS+SSLLGQPD +A PPPPLPPTP DDN+D
Sbjct: 241 KKRTKLGVVKARSISSLLGQPDSVMALAPPPPLPPTPPDDNID 240
BLAST of Sed0001893 vs. NCBI nr
Match:
KAG6596241.1 (hypothetical protein SDJN03_09421, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 280.4 bits (716), Expect = 1.7e-71
Identity = 171/283 (60.42%), Postives = 188/283 (66.43%), Query Frame = 0
Query: 1 MRIRKRQIPLPFSSLS---PLSDPAALLLLRRPVQLRRPTSALPPPPEQHHHHHDTTRDI 60
MRIRKRQ+PLP + S P+SDP A P EQ H D TR+
Sbjct: 1 MRIRKRQLPLPLAFSSGPRPVSDPL-------------HAHAPPTEKEQQEHIEDNTRER 60
Query: 61 KLFGAQTSNGVLPQSTSNSPQVMGEWCEREKAFPLKKRRGSFKRPSDHGEDEDQMITTTV 120
F A+TSNGV+PQSTS SPQV+G W ERE+ FPLKKRR DH
Sbjct: 61 CEFDAETSNGVVPQSTS-SPQVVGRWGEREREFPLKKRRS-----DDH------------ 120
Query: 121 KTMMINNKCPLPQKQEQQEHQSNPPGLNLPGKKKSRGGVLMEGSRCSRVNGRGWRCCQQT 180
NN K++Q+EHQS GLNL GK+KSRGG LMEGSRCSRVNGRGWRCCQQT
Sbjct: 121 -----NNNGNKKMKKKQEEHQSK-MGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQT 180
Query: 181 LVGYSLCEHHLGKGRLRSMNSVRSRSLAATAPKSVVIVEKEDEKK--PSPSPLSPLMVTS 240
LVGYSLCEHHLGKGRLRSMNSVRSRS AAT +VEKED KK PSPSP PL +TS
Sbjct: 181 LVGYSLCEHHLGKGRLRSMNSVRSRSSAAT------VVEKEDNKKPSPSPSPRPPLTLTS 240
Query: 241 KKRMKLGVVKARSMSSLLGQPDCTIAAVPPPPLPPTPEDDNMD 279
KKR KL VVKARS+SSLLGQPD +A PPPPLPPTP DDN+D
Sbjct: 241 KKRTKLCVVKARSISSLLGQPDGVMAVAPPPPLPPTPPDDNID 240
BLAST of Sed0001893 vs. ExPASy TrEMBL
Match:
A0A6J1EWY8 (Growth-regulating factor OS=Cucurbita moschata OX=3662 GN=LOC111436877 PE=3 SV=1)
HSP 1 Score: 287.0 bits (733), Expect = 8.7e-74
Identity = 175/283 (61.84%), Postives = 193/283 (68.20%), Query Frame = 0
Query: 1 MRIRKRQIPLPFSSLS---PLSDPAALLLLRRPVQLRRPTSALPPPPEQHHHHHDTTRDI 60
MRIRKRQ+PLP + S P+SDP L P PT + P EQ H D TR+
Sbjct: 1 MRIRKRQLPLPLAFSSGPRPVSDP---LHAHAP-----PTVSNPMEKEQQEHIEDNTRER 60
Query: 61 KLFGAQTSNGVLPQSTSNSPQVMGEWCEREKAFPLKKRRGSFKRPSDHGEDEDQMITTTV 120
F A+TSNGV+PQSTS SPQV+G W ERE+ FPLKKRR DH
Sbjct: 61 CEFDAETSNGVVPQSTS-SPQVVGRWGEREREFPLKKRRS-----DDH------------ 120
Query: 121 KTMMINNKCPLPQKQEQQEHQSNPPGLNLPGKKKSRGGVLMEGSRCSRVNGRGWRCCQQT 180
NN K++Q+EHQS GLNL GK+KSRGG LMEGSRCSRVNGRGWRCCQQT
Sbjct: 121 -----NNNGNKKMKKKQEEHQSK-MGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQT 180
Query: 181 LVGYSLCEHHLGKGRLRSMNSVRSRSLAATAPKSVVIVEKEDEKK--PSPSPLSPLMVTS 240
LVGYSLCEHHLGKGRLRSMNSVRSRS AAT +VEKED KK PSPSP PL +TS
Sbjct: 181 LVGYSLCEHHLGKGRLRSMNSVRSRSSAAT------VVEKEDNKKPSPSPSPRPPLTLTS 240
Query: 241 KKRMKLGVVKARSMSSLLGQPDCTIAAVPPPPLPPTPEDDNMD 279
KKR KLGVVKARS+SSLLGQPD +A PPPPLPPTP DDN+D
Sbjct: 241 KKRTKLGVVKARSISSLLGQPDSVMALAPPPPLPPTPPDDNID 245
BLAST of Sed0001893 vs. ExPASy TrEMBL
Match:
A0A6J1EQU2 (Growth-regulating factor OS=Cucurbita moschata OX=3662 GN=LOC111436877 PE=3 SV=1)
HSP 1 Score: 284.3 bits (726), Expect = 5.6e-73
Identity = 172/283 (60.78%), Postives = 189/283 (66.78%), Query Frame = 0
Query: 1 MRIRKRQIPLPFSSLS---PLSDPAALLLLRRPVQLRRPTSALPPPPEQHHHHHDTTRDI 60
MRIRKRQ+PLP + S P+SDP A P EQ H D TR+
Sbjct: 1 MRIRKRQLPLPLAFSSGPRPVSDPL-------------HAHAPPTEKEQQEHIEDNTRER 60
Query: 61 KLFGAQTSNGVLPQSTSNSPQVMGEWCEREKAFPLKKRRGSFKRPSDHGEDEDQMITTTV 120
F A+TSNGV+PQSTS SPQV+G W ERE+ FPLKKRR DH
Sbjct: 61 CEFDAETSNGVVPQSTS-SPQVVGRWGEREREFPLKKRRS-----DDH------------ 120
Query: 121 KTMMINNKCPLPQKQEQQEHQSNPPGLNLPGKKKSRGGVLMEGSRCSRVNGRGWRCCQQT 180
NN K++Q+EHQS GLNL GK+KSRGG LMEGSRCSRVNGRGWRCCQQT
Sbjct: 121 -----NNNGNKKMKKKQEEHQSK-MGLNLAGKRKSRGGALMEGSRCSRVNGRGWRCCQQT 180
Query: 181 LVGYSLCEHHLGKGRLRSMNSVRSRSLAATAPKSVVIVEKEDEKK--PSPSPLSPLMVTS 240
LVGYSLCEHHLGKGRLRSMNSVRSRS AAT +VEKED KK PSPSP PL +TS
Sbjct: 181 LVGYSLCEHHLGKGRLRSMNSVRSRSSAAT------VVEKEDNKKPSPSPSPRPPLTLTS 240
Query: 241 KKRMKLGVVKARSMSSLLGQPDCTIAAVPPPPLPPTPEDDNMD 279
KKR KLGVVKARS+SSLLGQPD +A PPPPLPPTP DDN+D
Sbjct: 241 KKRTKLGVVKARSISSLLGQPDSVMALAPPPPLPPTPPDDNID 240
BLAST of Sed0001893 vs. ExPASy TrEMBL
Match:
A0A0A0LGX5 (Growth-regulating factor OS=Cucumis sativus OX=3659 GN=Csa_3G806230 PE=3 SV=1)
HSP 1 Score: 270.8 bits (691), Expect = 6.4e-69
Identity = 173/307 (56.35%), Postives = 203/307 (66.12%), Query Frame = 0
Query: 1 MRIRKRQIPLPFSSLSPLSDPAALLLLRRPVQLRRPTSALPPPPEQHHHHHD-----TTR 60
MRIRKRQ+PLP + S LSDP PVQL P+S P P ++ +R
Sbjct: 1 MRIRKRQLPLP--TFSSLSDP--------PVQLPLPSSDPPINPLDNNQKQKLLQQYDSR 60
Query: 61 DIKLFGAQT-SNGVLPQSTSNSPQVMGEWCEREKAFPLKKRRGSFKRPS-----DHGEDE 120
+ L GA+T +N +LP S+S+S Q G WCE+EKAFPLKKRRGSF+R S DH +D
Sbjct: 61 ETILIGAETINNALLPHSSSSSSQGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHSKDS 120
Query: 121 DQMITTTV---KTMM---INNKCPLPQKQEQQEHQSNPPGLN-LPGKKKSRGGVLMEGSR 180
D + T + K MM +N KC L QKQ + GL+ + GKK+SRGG LMEGSR
Sbjct: 121 DHQVATKLQDEKKMMKTKMNKKCTLSQKQSK-------VGLDAVVGKKRSRGGALMEGSR 180
Query: 181 CSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRSLAATAPKSVVIVEKEDEKK 240
CSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMN+VR+RSL A PK++V+VEK DEKK
Sbjct: 181 CSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSLVAATPKNIVVVEK-DEKK 240
Query: 241 PSPS-----------PLSPLMVTSKKRMKLGVVKARSMSSLLGQPDCTIAAVPPPPLPPT 279
PSPS P S +TSKKRMKLGVVKARSMSSLLGQP+ A P P P T
Sbjct: 241 PSPSPPPSPFPSSPPPPSSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVATPLSP-PST 288
BLAST of Sed0001893 vs. ExPASy TrEMBL
Match:
A0A6J1F795 (Growth-regulating factor OS=Cucurbita moschata OX=3662 GN=LOC111441497 PE=3 SV=1)
HSP 1 Score: 270.8 bits (691), Expect = 6.4e-69
Identity = 178/312 (57.05%), Postives = 211/312 (67.63%), Query Frame = 0
Query: 1 MRIRKRQIPLPFSSLS--PLSDPAALLLLRR--PVQLRRPTSALPPP------------- 60
MRIRKRQ+PLPFSSLS PLSDP LLRR PVQL + PP
Sbjct: 1 MRIRKRQVPLPFSSLSPLPLSDP----LLRRTPPVQLHLQLPSSDPPNLHPYACDSAAYH 60
Query: 61 ------PEQHHHHHDTTRDIKLFGAQTSNGVLPQSTSNSPQV-MGEWCEREKAFPLKKRR 120
+ HD +R+ +FGA+ SNGVLP S S+SPQV G+WCER+K FPLKKRR
Sbjct: 61 TNNALGKKDQLEQHD-SRETTVFGAEASNGVLPLS-SSSPQVGDGQWCERDKDFPLKKRR 120
Query: 121 GSFKRPSDHGED--EDQMITTTVKTMMINNKCPLPQKQEQQEHQSNPP-GLNLPGKKKSR 180
GSF+R SD ++ +DQ T M + LP ++ +++ P GLNL GKK+SR
Sbjct: 121 GSFERQSDDDQNNADDQTTTAAAAAAMES----LPDHKKTTKNKKQPKLGLNLAGKKRSR 180
Query: 181 GGVLMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRSLAATAP--KS 240
GG LMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMN+VRSRSLAA A K+
Sbjct: 181 GGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRSRSLAAAAATLKN 240
Query: 241 VVIVEKEDEKKPSPSPLSP---LMVTSKKRMKLGVVKARSMSSLLGQPDCTIAAVPPPPL 279
+V V+K DEKKP P P P L + SKKR KLG+VKARS+SSLLGQPD +AA+PPPP
Sbjct: 241 IVTVDK-DEKKPPPCPPPPSPSLTLASKKRTKLGLVKARSISSLLGQPD-GMAAIPPPPP 300
BLAST of Sed0001893 vs. ExPASy TrEMBL
Match:
A0A6J1J4K8 (Growth-regulating factor OS=Cucurbita maxima OX=3661 GN=LOC111481709 PE=3 SV=1)
HSP 1 Score: 265.0 bits (676), Expect = 3.5e-67
Identity = 175/310 (56.45%), Postives = 208/310 (67.10%), Query Frame = 0
Query: 1 MRIRKRQIPLPFSSLS--PLSDPAALLLLRR--PVQLRRPTSALPPP------------- 60
MRIRKRQ+PL FSSLS PLSDP LLRR PVQL + PP
Sbjct: 1 MRIRKRQVPLSFSSLSPLPLSDP----LLRRTPPVQLHLQLPSSDPPNLHPYACDSAADH 60
Query: 61 ------PEQHHHHHDTTRDIKLFGAQTSNGVLPQSTSNSPQV-MGEWCEREKAFPLKKRR 120
+ HD +R+ +FGA+TSNGVLP S S+SPQV G+WCER+K FPLKKRR
Sbjct: 61 TNNALGKKDQLEQHD-SRETTVFGAETSNGVLPLS-SSSPQVGDGQWCERDKEFPLKKRR 120
Query: 121 GSFKRPSDHGEDE-DQMITTTVKTMMINNKCPLPQKQEQQEHQSNPPGLNLPGKKKSRGG 180
GSF+R SD ++ D TT ++++ + K +KQ + GLNL GKK+SRGG
Sbjct: 121 GSFERQSDDDQNNADDQTTTAMESLQDHKKTTKNKKQPKL-------GLNLAGKKRSRGG 180
Query: 181 VLMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRSLAATAP--KSVV 240
LMEGS CSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMN+VRSRSLAA A K++V
Sbjct: 181 ALMEGSLCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRSRSLAAAAATLKNIV 240
Query: 241 IVEKEDEKKPSPSPLSP---LMVTSKKRMKLGVVKARSMSSLLGQPDCTIAAVP--PPPL 279
V+K DEKKP P P P L + SKKR KLG+VKARS+SSLLGQPD +AA+P PPP
Sbjct: 241 TVDK-DEKKPPPCPPPPSPSLTLASKKRTKLGLVKARSISSLLGQPD-GMAAIPPSPPPS 295
BLAST of Sed0001893 vs. TAIR 10
Match:
AT2G42040.1 (CONTAINS InterPro DOMAIN/s: WRC (InterPro:IPR014977); Has 219 Blast hits to 219 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )
HSP 1 Score: 127.5 bits (319), Expect = 1.7e-29
Identity = 115/292 (39.38%), Postives = 134/292 (45.89%), Query Frame = 0
Query: 1 MRIRKRQIPLPFSSL--SPLSDPAALLLLRRPVQLRR---------------PTSALPPP 60
MRIRKRQ+PLP SSL PLSD L R P R +LPPP
Sbjct: 1 MRIRKRQVPLPLSSLLPVPLSD---LYFNRSPTATARYFRGGYKDGGDDFGSLQLSLPPP 60
Query: 61 ---------------PEQHHHHHDTTRDIKL---FGAQTSNGVLPQSTSNSPQVMGEWCE 120
E+ D D+ + A S V P+ S S + E +
Sbjct: 61 SQISDRLIQRDLIKKKEEVKALDDDNGDVDVKSRTDASGSKNVNPRGESVSSIQVVE--K 120
Query: 121 REKAFPLKKRRGSFKRPSDHGEDEDQMITTTVKTMMINNKCPLPQKQEQQEHQSNPPGLN 180
EK L+KRRG F D+ ++ED E S G
Sbjct: 121 NEKVVSLRKRRG-FINFEDYEDEED-------------------------EEASGGGGRI 180
Query: 181 LPGKKKSR--GGVLMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSVRSRS 240
GKKK++ GG L EGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGR+RSMN
Sbjct: 181 NKGKKKAKKSGGGLEEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRVRSMNKSGG-- 240
Query: 241 LAATAPKSVVIVEKEDEKKPSPSPLSPLMVTSKKRMKLGVVKARSMSSLLGQ 256
K V+VE KKR+KLG+VKARS+SSLLGQ
Sbjct: 241 -GRGGEKKAVVVE-----------------VKKKRVKLGMVKARSISSLLGQ 241
BLAST of Sed0001893 vs. TAIR 10
Match:
AT5G53660.1 (growth-regulating factor 7 )
HSP 1 Score: 43.1 bits (100), Expect = 4.2e-04
Identity = 22/58 (37.93%), Postives = 30/58 (51.72%), Query Frame = 0
Query: 142 PGLNLPGKKKSRGGVLMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNSV 200
P P K+ G L E RC R +G+ WRC ++ + + CE HL +GR RS V
Sbjct: 93 PSSASPCNNKNIAGDL-EPGRCRRTDGKKWRCAKEVVSNHKYCEKHLHRGRPRSRKHV 149
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022930465.1 | 1.8e-73 | 61.84 | uncharacterized protein LOC111436877 isoform X1 [Cucurbita moschata] | [more] |
XP_038903168.1 | 2.3e-73 | 57.61 | uncharacterized protein LOC120089834 [Benincasa hispida] | [more] |
XP_023521667.1 | 8.9e-73 | 61.13 | uncharacterized protein LOC111785505 [Cucurbita pepo subsp. pepo] | [more] |
XP_022930542.1 | 1.2e-72 | 60.78 | uncharacterized protein LOC111436877 isoform X2 [Cucurbita moschata] | [more] |
KAG6596241.1 | 1.7e-71 | 60.42 | hypothetical protein SDJN03_09421, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1EWY8 | 8.7e-74 | 61.84 | Growth-regulating factor OS=Cucurbita moschata OX=3662 GN=LOC111436877 PE=3 SV=1 | [more] |
A0A6J1EQU2 | 5.6e-73 | 60.78 | Growth-regulating factor OS=Cucurbita moschata OX=3662 GN=LOC111436877 PE=3 SV=1 | [more] |
A0A0A0LGX5 | 6.4e-69 | 56.35 | Growth-regulating factor OS=Cucumis sativus OX=3659 GN=Csa_3G806230 PE=3 SV=1 | [more] |
A0A6J1F795 | 6.4e-69 | 57.05 | Growth-regulating factor OS=Cucurbita moschata OX=3662 GN=LOC111441497 PE=3 SV=1 | [more] |
A0A6J1J4K8 | 3.5e-67 | 56.45 | Growth-regulating factor OS=Cucurbita maxima OX=3661 GN=LOC111481709 PE=3 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT2G42040.1 | 1.7e-29 | 39.38 | CONTAINS InterPro DOMAIN/s: WRC (InterPro:IPR014977); Has 219 Blast hits to 219 ... | [more] |
AT5G53660.1 | 4.2e-04 | 37.93 | growth-regulating factor 7 | [more] |