CaUC11G212770 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC11G212770
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionChalcone-flavonone isomerase family protein
LocationCiama_Chr11: 25841998 .. 25845849 (-)
RNA-Seq ExpressionCaUC11G212770
SyntenyCaUC11G212770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTCCGGTTGGTCGGTTTCCGGCTTCAGCTGCCGCCGATTCTGAAGCCGACTGTTGTTCGAGCAGTGATTGACGACATGTTGGACACGACGAATGGGAAGCCAACCAGGTATCGATACATCGAACGTGAAATCCGTGGTTACATTTGGGGAGTACTTTGATTTTCTCACCGGTGATGAAATCTCCAAGGCAGATAGGGCAATCCGTTTCTCGGATCTCTAGACCCGATTCCGACCCGTATACGGCAACTGGAATTTGGCGTAATGCGCTTTTCTTTAACCCTGTAGCGGCGAGGCGCGAGGCTGTTCCGCCGCCTGTCTCGAAGGCGAACCGCCGGCTGCAGCGGAGGGCGCACCGGACAATCGAGTTGAGTCCTAGAGCGCAAATCAACGCGCAGAGTAACGCGGCAAGAATTATCACCATGTTCGTGTCGAAATTGGCTTCGTTGCTATATGAATTTCGCGTTCTGCTTCCATTAGACGGTGCCGCCGTCGTATCGGCGTCGAGGAGGAGGCGGTGAGGACGGTCACGGTGGTGATCGGACTCCATCGTCATAGGAGCTGCTAACTACTTCAAAACAACAACCGGACTGATTCTGTCAGGTAATTTACTTTTAGATCTTGAACCTGTTTGATGAAATTCCACAGTGAAACTTGATAATTCAGAACTCTATAATTCGTTGAGGAGTGAATCGATCCACGAGAAAGATTGAAAGTAGAAAGTTCATATCCACTCATGTACCAATCAAACCCTTGTGTTCTCTGTTCCCACCTTCTAGCTTTCTCTTCTCTGGACCTTAATCAAAGCTCAACTGTAAAAGTGGGGGCTTTGTTTTGATTCTGCCTGATCTGCCTTCAACTAGAAAGGACGATGAATGATGATTCTTTGAGAGTTAAATCAAACAGCTTTTAGGATTCCAACGAAGTTTCAAAGCATCTTACTAGTCACTCAAAAACCCAAAATACAAGAGCAGGTCAAAGAATAGTATCCATGGCTGCAAAAAGCTTGGTTTCCCATGGCAGACCTTCTGAGAGGAACCAGGATGAAACATCAAAAGAATAGAAAATCTCTTGGCCTCACAAAACCCAAGTCCCTTGTTAGAAACTGAGAACTCCCAGAAAGAATTTTCTTCTGGCCAAACAAGAGAGGAAGAAGAAAATTATAGAGGGGAAGTGGGGTTATTTGAATAGAAGTAAAAGAGAGAATTGAGTAGAATTAGAATATGGACAAGAAAATTAACAGCAAAAAAATGGGTATATTATACTGATACATAAAGTCTAAAGAGGGTGAGATGGGCAGGGCTAGACAATAATTAGAAGGAAATGGGTTGCATAATTAATTGAGAAGAAAAGAACAGAGACAAAAAACTAACCTGTAATGGTACCTGATCCCCGACTAATCAAAGATTAGACAATATAAATAAATGCTGATTCTGAGCACAAAATCCTTCTCTTCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCTCCTTTCAGCTTCAAAAGTTAAAGTAAGCTGTCACTTTGGTTTTGGACCAGTGGCAAATGTTCCAGCCAAAAGCTTTGTCTAGGTAAGATTTGATGTCCTAGGTTGGTTCGTAAGGTTTTAAGATTACAATACCTTCCCTTCCCCCCCCCCACATTAGTCGTTAATGGGTTAAGTTACAAAGTATTTTGGTTCAAATGGTCAAATTTAGTCGTTTACTTTCAATAAATCTTAAATTTAGGTTTTTTTTACAGTGATTATGTTTACAAAACTTATAGACATGATATAGACCGATTATGTTTACAAAACTTATAAACATAATATAGACCAAAGCATTTTATAGTATGGTAGGTTTGGCTTCACTTTCTTGAAATTAAAGGTTCTCAATAGATGAAGAATTCTTACCTGTCATTATAAAAAGAAAAAGGGATGATGTAACTGATTTTCTTAGAAGTTAACTATTACTTTATTGGAGAATATAAAACTTGTATAAAGTAGTTGAATTTATGATGCTATGCAACTTTCTCTGTGATGTGTTTATTTTGAACAAGGTGGTATCAGTTCTTGGGAGTGATAATTCATTTGCGCGTTATATATCGATTTTCCTAGTTGGTTGTTAGAGGCTTACAAATTTGATTGTTCTGTTATTGCCTAAGAACTTAGTTCTAGTTCTAATCAGTAAAATTTTCTTGGCCATTCTTGGCCAAATTGACTAACGGTGGCAGTTGCAATTATATTATTAAGCTTTCAATTTTAAAAATTGAGCCCTCAAACTTATATAAGTATTAAAATTGGGTCAAATTGGACTTTTAAATTTATATATTTGTATAAATTGTAACATTTGTATAAGTTTGAGGGTTCAATTTTTTATCATTTGTGTGTTCAAATTCTACCATTATTGTAAGCTTGAGGATCCAATTTTAACCGTTAGAAGTTGAGTGACCCAATTTTTACAATTGAAACCAATCTTTGGAAGTTTAGTGGCCCATACTTCATGGTGATTTTTGCAATTTATTCTATTTTTTTCGTCTACAAAATAAATAAATAAAACAAAAACAAACAAACAAAAACAAGTGGTATCAGTCGGACAAGCTCGGAGTCATACTCATTGATTGTTTGTCTTAATTTAACTATTAAGACATTGGAGTGAAATTTTCCATAGAAGGGCAGTTTAGAATTTCTAGAAATTTTAAGATTTTACTTTATTTTGCAGCAAATTTTTTTCCATTGATGGTTAAACCTTTTTACTTTATTTTGCAGCAAATTGTGAGACGCAATTTTAGAGAGGAAGGATGA

mRNA sequence

ATGGATTTCCGGTTGGTCGGTTTCCGGCTTCAGCTGCCGCCGATTCTGAAGCCGACTGTTGTTCGAGCAGTGATTGACGACATGTTGGACACGACGAATGGGAAGCCAACCAGGTATCGATACATCGAACGGCAATCCGTTTCTCGGATCTCTAGACCCGATTCCGACCCGTATACGGCAACTGGAATTTGGCGTAATGCGCTTTTCTTTAACCCTGTAGCGGCGAGGCGCGAGGCTGTTCCGCCGCCTGTCTCGAAGGCGAACCGCCGGCTGCAGCGGAGGGCGCACCGGACAATCGAGTTGAGTCCTAGAGCGCAAATCAACGCGCAGAGTAACGCGGCAAGAATTATCACCATGTTCGTGTCGAAATTGGCTTCGTTGCTATATGAATTTCGCGTTCTGCTTCCATTAGACGGTGCCGCCGTCGTATCGGCGTCGAGGAGGAGGCGGTTGGTTCGTAAGGTTTTAAGATTACAATACCTTCCCTTCCCCCCCCCCACATTAGTCGTTAATGGGTTAAGTTACAAAACCAAAGCATTTTATAGTATGCAAATTGTGAGACGCAATTTTAGAGAGGAAGGATGA

Coding sequence (CDS)

ATGGATTTCCGGTTGGTCGGTTTCCGGCTTCAGCTGCCGCCGATTCTGAAGCCGACTGTTGTTCGAGCAGTGATTGACGACATGTTGGACACGACGAATGGGAAGCCAACCAGGTATCGATACATCGAACGGCAATCCGTTTCTCGGATCTCTAGACCCGATTCCGACCCGTATACGGCAACTGGAATTTGGCGTAATGCGCTTTTCTTTAACCCTGTAGCGGCGAGGCGCGAGGCTGTTCCGCCGCCTGTCTCGAAGGCGAACCGCCGGCTGCAGCGGAGGGCGCACCGGACAATCGAGTTGAGTCCTAGAGCGCAAATCAACGCGCAGAGTAACGCGGCAAGAATTATCACCATGTTCGTGTCGAAATTGGCTTCGTTGCTATATGAATTTCGCGTTCTGCTTCCATTAGACGGTGCCGCCGTCGTATCGGCGTCGAGGAGGAGGCGGTTGGTTCGTAAGGTTTTAAGATTACAATACCTTCCCTTCCCCCCCCCCACATTAGTCGTTAATGGGTTAAGTTACAAAACCAAAGCATTTTATAGTATGCAAATTGTGAGACGCAATTTTAGAGAGGAAGGATGA

Protein sequence

MDFRLVGFRLQLPPILKPTVVRAVIDDMLDTTNGKPTRYRYIERQSVSRISRPDSDPYTATGIWRNALFFNPVAARREAVPPPVSKANRRLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASLLYEFRVLLPLDGAAVVSASRRRRLVRKVLRLQYLPFPPPTLVVNGLSYKTKAFYSMQIVRRNFREEG
Homology
[Close]
BLAST of CaUC11G212770 vs. NCBI nr
Match: KCW47523.1 (hypothetical protein EUGRSUZ_K01285 [Eucalyptus grandis])

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-14
Identity = 51/85 (60.00%), Postives = 59/85 (69.41%), Query Frame = 0 

Query: 46  SVSRISRPDSDPYTATGIWRNALFFNPVAARREAVPPPVSKANRRLQRRAHRTIELSPRA 105
           SV+ I    +DPYTATGIWR +   +PV A   A    VS  N RLQR A RT+ELSPRA
Sbjct: 30  SVAGIFAAAADPYTATGIWRRSRLLSPVVASLAAACSGVSAPNLRLQRSAQRTMELSPRA 89

Query: 106 QINAQSNAARIITMFVSKLASLLYE 131
           QI+A S AAR+ITM VSKL SL+YE
Sbjct: 90  QISAHSRAARMITMLVSKLVSLMYE 114

[Close]
BLAST of CaUC11G212770 vs. NCBI nr
Match: KAF7830868.1 (hypothetical protein G2W53_013201 [Senna tora])

HSP 1 Score: 62.4 bits (150), Expect = 5.0e-06
Identity = 38/57 (66.67%), Postives = 40/57 (70.18%), Query Frame = 0 

Query: 71  NPVAARREAVPPPVSKANRRLQRRAHRTIELSPRAQINAQSNAARIITMFVSKLASL 128
           NP AA   A    VSKAN  L  RAH TIE +PRA I+AQS AA IITMFVSKLASL
Sbjct: 61  NPFAANLAAASSGVSKANLLLHLRAHLTIEFNPRAHISAQSKAASIITMFVSKLASL 117

[Close]
BLAST of CaUC11G212770 vs. NCBI nr
Match: KXG33623.1 (hypothetical protein SORBI_3003G338600 [Sorghum bicolor])

HSP 1 Score: 58.9 bits (141), Expect = 5.5e-05
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 0 

Query: 57  PYTATGIWRNALFFNPVAARREAVPPPVSKAN-RRLQRRAHRTIELSPRAQINAQSNAAR 116
           PYT+TG+ R+A F +P A    A  PP S ++ RR QR   R  EL P A+ +A S+AAR
Sbjct: 85  PYTSTGMLRSARFLSPPA---PAPAPPSSPSDARRAQRMRQRASELRPSAKRSANSSAAR 144

Query: 117 IITMFVSKLASLL 129
           ++TM VSKLASLL
Sbjct: 145 MMTMLVSKLASLL 154

[Close]
BLAST of CaUC11G212770 vs. NCBI nr
Match: RCV17245.1 (hypothetical protein SETIT_3G204600v2 [Setaria italica])

HSP 1 Score: 58.5 bits (140), Expect = 7.2e-05
Identity = 39/83 (46.99%), Postives = 47/83 (56.63%), Query Frame = 0 

Query: 51  SRPDSDPYTATGIWRNALFFNPVAA-------RREAVPPPVSKANRRLQRRAHRTIELSP 110
           S P   PYT+TG+ R+A F  P A          +A  PP   A R   R AHR  ELSP
Sbjct: 92  SPPPPPPYTSTGMLRSARFLIPPAQDAPRVDDDADAPSPPPPAAPRIPHRSAHRASELSP 151

Query: 111 RAQINAQSNAARIITMFVSKLAS 127
            A  +A+ +AAR+ITM VSKLAS
Sbjct: 152 MANSSAKKSAARMITMLVSKLAS 174

[Close]
BLAST of CaUC11G212770 vs. NCBI nr
Match: ACR34547.1 (unknown [Zea mays] >ACR38606.1 unknown [Zea mays])

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-04
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 0 

Query: 40  RYIERQSVSRISRPDSD--PYTATGIWRNALFFNPVAARREAVPPPVSKANRRLQRRAHR 99
           R + + S +  + P +   PYT+TG+ R+A FF+P A      PP      RR QR   R
Sbjct: 72  RQMAQTSAATAAAPSAPHAPYTSTGMLRSARFFSPPA------PPSSPAGARRAQRMRQR 131

Query: 100 TIELSPRAQINAQSNAARIITMFVSKLASL 128
             EL P A+ +A S+AAR++TM VSKL SL
Sbjct: 132 ASELRPIAKRSANSSAARMMTMLVSKLPSL 155

[Close]
BLAST of CaUC11G212770 vs. ExPASy TrEMBL
Match: A0A059A153 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K01285 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.4e-15
Identity = 51/85 (60.00%), Postives = 59/85 (69.41%), Query Frame = 0 

Query: 46  SVSRISRPDSDPYTATGIWRNALFFNPVAARREAVPPPVSKANRRLQRRAHRTIELSPRA 105
           SV+ I    +DPYTATGIWR +   +PV A   A    VS  N RLQR A RT+ELSPRA
Sbjct: 30  SVAGIFAAAADPYTATGIWRRSRLLSPVVASLAAACSGVSAPNLRLQRSAQRTMELSPRA 89

Query: 106 QINAQSNAARIITMFVSKLASLLYE 131
           QI+A S AAR+ITM VSKL SL+YE
Sbjct: 90  QISAHSRAARMITMLVSKLVSLMYE 114

[Close]
BLAST of CaUC11G212770 vs. ExPASy TrEMBL
Match: A0A1B6Q6S2 (Uncharacterized protein OS=Sorghum bicolor OX=4558 GN=SORBI_3003G338600 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.7e-05
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 0 

Query: 57  PYTATGIWRNALFFNPVAARREAVPPPVSKAN-RRLQRRAHRTIELSPRAQINAQSNAAR 116
           PYT+TG+ R+A F +P A    A  PP S ++ RR QR   R  EL P A+ +A S+AAR
Sbjct: 85  PYTSTGMLRSARFLSPPA---PAPAPPSSPSDARRAQRMRQRASELRPSAKRSANSSAAR 144

Query: 117 IITMFVSKLASLL 129
           ++TM VSKLASLL
Sbjct: 145 MMTMLVSKLASLL 154

[Close]
BLAST of CaUC11G212770 vs. ExPASy TrEMBL
Match: A0A368QGZ0 (Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_3G204600v2 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.5e-05
Identity = 39/83 (46.99%), Postives = 47/83 (56.63%), Query Frame = 0 

Query: 51  SRPDSDPYTATGIWRNALFFNPVAA-------RREAVPPPVSKANRRLQRRAHRTIELSP 110
           S P   PYT+TG+ R+A F  P A          +A  PP   A R   R AHR  ELSP
Sbjct: 92  SPPPPPPYTSTGMLRSARFLIPPAQDAPRVDDDADAPSPPPPAAPRIPHRSAHRASELSP 151

Query: 111 RAQINAQSNAARIITMFVSKLAS 127
            A  +A+ +AAR+ITM VSKLAS
Sbjct: 152 MANSSAKKSAARMITMLVSKLAS 174

[Close]
BLAST of CaUC11G212770 vs. ExPASy TrEMBL
Match: A0A287LWU2 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.6e-05
Identity = 42/93 (45.16%), Postives = 49/93 (52.69%), Query Frame = 0 

Query: 57  PYTATGIWRNALFFNPV--------AARREAVPPPVSKANRRLQRRAHRTIELSPRAQIN 116
           PYT+ G   +  F +P         AA      PP S A RR  R  HR  ELSP A+  
Sbjct: 88  PYTSMGRLLSVSFLSPPRPPADADDAASSSPPAPPASSAERRAHRMRHRASELSPSAKSR 147

Query: 117 AQSNAARIITMFVSKLASLLYEFRVL-LPLDGA 141
           A+S+AAR+ITM VSKLAS L   R     LDGA
Sbjct: 148 AKSSAARMITMLVSKLASPLLRARCAPSALDGA 180

[Close]
BLAST of CaUC11G212770 vs. ExPASy TrEMBL
Match: C4J047 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.0e-05
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 0 

Query: 40  RYIERQSVSRISRPDSD--PYTATGIWRNALFFNPVAARREAVPPPVSKANRRLQRRAHR 99
           R + + S +  + P +   PYT+TG+ R+A FF+P A      PP      RR QR   R
Sbjct: 72  RQMAQTSAATAAAPSAPHAPYTSTGMLRSARFFSPPA------PPSSPAGARRAQRMRQR 131

Query: 100 TIELSPRAQINAQSNAARIITMFVSKLASL 128
             EL P A+ +A S+AAR++TM VSKL SL
Sbjct: 132 ASELRPIAKRSANSSAARMMTMLVSKLPSL 155

The following BLAST results are available for this feature:
BLAST of CaUC11G212770 vs. NCBI nr
Match NameE-valueIdentityDescription
KCW47523.11.3e-1460.00hypothetical protein EUGRSUZ_K01285 [Eucalyptus grandis][more]
KAF7830868.15.0e-0666.67hypothetical protein G2W53_013201 [Senna tora][more]
KXG33623.15.5e-0552.05hypothetical protein SORBI_3003G338600 [Sorghum bicolor][more]
RCV17245.17.2e-0546.99hypothetical protein SETIT_3G204600v2 [Setaria italica][more]
ACR34547.11.2e-0442.22unknown [Zea mays] >ACR38606.1 unknown [Zea mays][more]
BLAST of CaUC11G212770 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC11G212770 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A059A1536.4e-1560.00Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K01285 PE=4 SV... [more]
A0A1B6Q6S22.7e-0552.05Uncharacterized protein OS=Sorghum bicolor OX=4558 GN=SORBI_3003G338600 PE=4 SV=... [more]
A0A368QGZ03.5e-0546.99Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_3G204600v2 PE=4 SV=1[more]
A0A287LWU24.6e-0545.16Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1[more]
C4J0476.0e-0542.22Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1[more]
BLAST of CaUC11G212770 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC11G212770.1CaUC11G212770.1mRNA