CaUC10G191490 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC10G191490
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionDNA-directed RNA polymerase subunit
LocationCiama_Chr10: 25792017 .. 25799911 (-)
RNA-Seq ExpressionCaUC10G191490
SyntenyCaUC10G191490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTTTTAAGTTTTAGGGTATTTTGAAACATTTGAGTTTAGGAGTAATTTTTTTAAACAAAATTTTAATGGTTTTCATTGAAACCTAATGAAAAGGGTATTTCTTAACTATTTTTGAAAGTTTAAAGGTATTTTTAAAACTTTTAACCGTTTAAAGGTATTTTTGACACAAAATATAAAATTTAAAGACATTTTTTTTTTTTATAATTTAGCAAAAGAAATCATCTTCCTACTCCTTTAATACCACAAAGAAAAAAACTTGTAAATTTGGTATGGTTGGCCTGTTTTTAGGAACTCAGAATGTCCATAATTGAATGAAAAATGACATTCTCCTCGTGTTAGCACCATGTGAAGTTACCAATTCACTCCTAAGATCCATCTGTGCGCCTATACGAGTTCAATACTCGATACTCAGTAACTAAGAAAAAAAATAAACACATGGCAAAAGAGTTAATTTAAATTATTTTTATTAAGGCGAAATACACTTTTTATTCCTAGATTTGAGTTAAAATTTTAAAATAGACACTTTAATCCCTAAAGTTGGGAAAATGACAATACCTAATCCTAGACTATGTGAATAATGTTCAATTAAATAGATGGATAAAATATAAGAAACACTCGATTAAATCAATCAACCCGACCCGAATAAGGTTTCTTCTATCCAATACATAGACACAAAAAAACTCTCTCGATTGTCGTCTAGCAGTCGTCACATCACTCACACTCAGCCACCGTCGATTCAGCCGCCTTTACTGTCTACTACTGAACCACTGCGACGTCGACGTGGGAGAAGCCAGGAAGCAGGCTCGGCCTCTTCTCTGCTAACATCGGCAGAATCCGCGTCGACATCGGAGAAGTGACGCTCATCGAGGAAGTCGATTGCATCGCCAGGCTTAAAGGGCGAGTGTGCTGTACTTTCGGGCGGTTTATCCTCTGTTTTCTTTACTTACATCTCTGTTTTTTAGCCTCTTATGGATTATTCCATTTCTTCAGACGCCTTCCTCTCTTTTTTCTCTATCACGGTTGTCGGAGAAGTAACGATCCTCGGGGAAGTCTGATTTTGGTCGATACGTAATTCAACCATCGGTCCCCATTGTGGTTCTGTTCGCTGATATTTCAGGTAATCTCACTTACAAGGGGATTTGAACTGATTTATTCAATTGACCCAATAATGAATTTCCTGTTCTTGCGATGGGAAATTGTTGTCTGGCTTTAATCTGAGTTTCTTGTTGTTACCTCACTGATTGTTTACTTTGGGTGGGTTTCTTGTTGTTACAGTCATTAATTGTTGTTTAGTCTTGCTCTTGTTATTGAAAATTTATTTTTGGTATGCTGTATTGAACTGATTGTGATTGTTCGGGGTTGTGGATTTTTCCTTCTTAAATGCAATTAACTGATTGTTGTTGTTTCTGTCTCTCGATTGCCAATGTAGAAGAACATCCAGACTTTGATTAAAATCCTGATGAAAAACTTTGTTATTGAGAGAGGAGAAATAAGTCAGTTACTGTAAAAGGACCAAAACCAGACTTTGTTTTCCGAGATTATATTTTGGTTTACTGGTTTGGGAGGTTGAAGCTGCCGCATGATCTGTTTTAATTGCTAATCTCTTCAAGGGATTTCTGTAAAGCAATATTGGATCAATAAGGCAAATGGGTTTCAACTTTTAAGAAAGCCCAAACTCAAGGTGAATTGATTTAATTGCTAATTTCCTTCTAATAGGGTTTTCTTGTGTACACCCATACCAGATTTTTTATAAGGCAATATCGAATTTTGATGTTGGATTGTGGTGAACTATACTAACACTTCCTCTCCATGAATCTCTCCAGTGTCCCACCCTCCTTCACACACCCTGTCAGACTACCTAACCATGAATTGTAACCTCACATTTCACCATGAAAGCCACCGTATATTATCACCATCAATATGAAATCCTTCACCATTGAAGTAGATGCATGTGGAGGGAGCTTGGGCCCATTGCCAACGAGCCAAGACCAAGTTGTTGATTTATAACTCATAATATATTATACATATACGTTGGAAGGTTAGAAATACATTATATATATTACTGCTAAATCAATCTTCTCTTTAATGAAATGCTTATCTACCTCAATATGTTTCGTTCTATCGTGTAGAAATTGGATTATGAGTTATCAAAATGACAACTTTATTGTCATAGTAAATTTGTATAGGTGTCTTCTGAAGGAACTCCAATTCTTTAAGTACACTTTTGATCCATACACCCTCACAAATTCCATGTGCTAAAGCTCTAAATTTTAGAGCAACACTACTTCTTGTTGCCACACTCTATTCTTTGCTCCTCCATGTAATTAAGTTCACTCCAACAAAGGAATAATAACATGAGGTAGATCTTCTTTGATCTATCTATAGCACTTCCTACTCAATCTACATGAGTATAAACTTTTGTTTGAAAGTGATGATGTTTTTGCCATGAGTTCCTTTTAGATATCTCAAAATTCTATAAGCAATTTCAAAATGAATTTGTCCATGTGCATGAATAAATTGACTTTCCATGCTTACAACATATGCAATATCAGGATGTGTATGAGATGGATTGGCCTTCTAATAAGTCTCTGAAATTCTTGTCATTGATTTCTTTTGCTTTGGCAACTCGTAACTTTAGATTGGGCTCAATGGAAGTTTTTGGAACCTTACATCCAAGTAATCCTGTTTCTTCAGGTAAGTCAATAACATATTTTCTTTGAATAACAAAGATACCCTTCTTTGATCCTGTGAATTTCATTCCAAGAACTATTTTAATGTTCCCAGATCCATTTACACCCCTACAAATCACCAAACATTCCTCATCAGTGGGAATGTTTCTTCTCACATTGAAATGTGATTTATGAAAACGTTGCATTTATCTTGAGGTGTCCTTTTTTGTTGCATTCAATTTCTTATTCTTGTTTCATTATATTGAGTGGATTATGTGTTTGATATGTCAGATTATTGATTGATAGATGATGGCTTTGTGTTAGGACTTAGCAAATGGAGTTTTGCCCGACTTGTGGGAACATGCTGCAATTTGAGTTGCCTAATATGGGTAAATCTTCCAGATTCTTCTGCCCGACTTGTCCATATGTGTCCTACTTGGAGAACAGGGTATGTGCTGCTGAAATTTCTTTCTAGTGGCAAGGCCTCAAGTTGTCTAGCTTCCCTTTTTTTCCCATTACTTTCTTATGAGGTGACTTAAGGAGAGCATTCTCGTGGTTCTACTATTCAGGTAAAAATCAAAAGAAAGCAACATTTGGTAAAAAAGGAATTAGAACCCATAATCTCTGATGATGACATGAAAAATGCAGCTCAAACTGAAGGTATACATCCTTCTCCGTGCTTAGTGTTTGTTTTTGAATTAAAATTCTACCTGCCGGAGTTGGGCAAAAGATTTAATCGTATAGCTAATGTAAGGACAATGACCTGATTCACCTTTAAAATTATTCAACTGCTTATGCATATACACGTATATGGTAGGGCAAACTAGTGAAGCAGTTATATTTCCTTTAATTAAATGAAATTTACAGAGACTCCAAGTCACCAAAAGTCAACAAGTAGCAAGAAAGAAAGAATCCCACTGTCTGAAGTCATAATTGAATTGGAGTATTTTACAAACTAGCAACAATACCATTAACCCAAATAATGCTGTTCTCATCTTTGAACCCCCTTGAAGCTTTAAAAATGAAGTGCCTTAAAGCGTGCAACAAACTTGATCAACACTCAAGAAAAAAATGGAGAATTTGAGTCAATTAACCCTTCTAAAATGGAACACCTATTGAGCTAGAGGAACAATGAAAGATTGCCAGTGGTATGACACAGTTAGATTCACTGATGTTGGAGAGAGATAGATCACTTGAAAACTTTGCATTTTCTGGGAAGCTTGACCTCCAATCCTCTTGCACAACTTTAGTAGGGTAGGTGCTTGTCTATCGGCTATAGATTGATTAAGGTAGTTACCGAGAAAGACCCTGAAGGAGTGAGGCTTCATATATTATATATATACACATATATGTGTGTGAATAGATATATATATAAAGAGACTAATGCTCTAAATTAAGATCAGGATAAAAGGACAATAGGAAAGATAAACTCATATTCAGGAATATTGGTTGAGGGAATTATGGATGATATGCACAGGACTGCCCACTACTCTGTTACCTGTATAAAGGTCCTCTTCTAAACCTCAAATTACAGCAAAAAGTATCCTTATACTGCACGTCTTTAGTTGAAATACACCATTAGATATGTAGCACTTTATTGTATAAGGGGGTTAACTTCTTAACTGACTTCTAGGAGCTTTTATCCATAGTATAAGAGCAACCCAAAATGAGTGATCTGTTAGGAACTAAAGTAGTATGGGCTACCTTTGTCCCACATTGGTTAGAATGGGATGACCAATGTAGTACTTAAGTGGCTTGGCTCTCTCACCACAATAGCTAGCTTTTGGAGTGTGGTTCTCCAAGGTGCTTAAGTACCTAACAATGGTATCGAGTTAGTATTGTTAGGAACCAAGGTAGCATTGTTAGGAACCTTAGTTCTTGAGCATTGGCACAATTGGCAGAGCTTTGCAACAACAGTGCCAAGTTGTGTGTATGGGCAACACACAGGTGAAGAGCAAGGCATGTGGCAACCTGTGGGCAGTGGACATGCGATCAGGCGCATCACACCCATAGCATAGCGTGGGCAGGCGGCCCACGCCCTGTGCCCCAAGGCATGCGACACGGCAAGCGTAGAGCAGACCGGCAGACGCGCGCGAGCGGTACACTGGGCACGAGCACCTGATGCGCAAGTGGTGCACTCGAGAGTATCGAGCCGTGTACGATGGGCAAAGAGAACGCCCAAGGCTATTAGGAGGTTAGCCTAGAGCCCTAGGTGATGTGGACATGCAGGCCGATGCATCACGACATCGGGCACGGCGAGGGCAGACGGCCCATGCCCCGTGCTTAGAGGTTAGCACGGATAGATGCCCGCACGGGACACTAGATGCGTGTGCCAACCAGCAAGCGCCGATAGGCGTGGCCCAGATTGGGCAACAGCGCACTCCACGGGCGAGAGCGCTAGGCGCGCAAGGCCAGGCAGACGCACGGGCGTCACAGGCGCGCGCTAGGCAGCATGCACATGGTGTGCGGGAGACGCAGCCTTGGTGCCATCTTGGCACAAGCGATCAAGCACGGACTCAAGATGAGGCAAGCTTGATCTGGGACATGGGGAAGCGTAAGCCATCAAGCTCTTGGCCATATAGCTTGTATGCACGACACGTGGTAGGCATTTTGAGAGACACTTAATAATATGAGATTATTATTAAGTGGGCTTGTCCAAATAAGCTAGAAAGCATGATTGTAGGCGAGAATGGTGGAAATCCATGATCATGGACATCATGGGTGATTATCCCCTAGTTTGTAGGAAGGTGGCCCTAAAAATAGACGTAGTGGGAAGTGGATGCCTAATAATAGAGAGAAATGACCATGTTCCCCACCATCCTAAAATGTAGGAGATAAATGTGGAACATGGGAGAGTGGCCCGAATTACATGGGTAGTGGGTGGTTTTACCCCACTAGGGCCACTCCCACATTTCTCTCCTACTATTGCTCCTCCCACGACTATATAAAGATGACCTTGGGGATTGTCCAAGGCACTCAATTTCTCACACGCTCACTCATTCCTTGAGTGTCTGGTTGAGTCACTTCTTGCAAAGGGAAGAGATCCCACGTGGGGAGACTTCCCGTCTTTAGTCTTGTAATTGTGGTTTTTACTACCTTTGATAATAAAATGATAGTTTCCACATATCGAATGTGTTCTCTCCTCCCCCTTTCGTAGCCTACACAAGGAGGCCACATTTTGTGAAGTTTAAAGGCGCTAGCCTTAGAGAGAGATCGGGAAGACACTTTAGCCTCCCTCGAGTACAAACAGGCCCATTTAGAAGGCTGGTTAAGGGAGAACCTTGGTGCTGCACGAGGTATTCCGCGAAAAAAAAAATTATACGCACTACGCTTCCGACTTTCACCCTTGTGACAAGTGGTATCAAAGCGTGGTGCGTATAATTTTTTTTCGCGGAATACCCCGTGCGGTGCCAAGGTTCTCCCTTGACCAGCCTTCTAAATTGGCCCTTTTGTACCCGAGGGAGGCGAGAGTGCCTTCCTGATCTCTTTCTAAGGCTTGCGCTGGCTAGGATGACACACAAGAGCTTGAGTGGAAATATAATCTTTATTATATGAAAACTACTACTACAAGGGTGGAGCTTGGAGCTCGGAGCTCTTTGGACAAGATACACTCAACCTAACACTACTCAAAGAGAGGATCTCACACCAATGCAATTGGACTTGTGAGACGTGTTTGGCTATCTCGGTGCCCCTGGACAATTCCCAAGTTTCACCATTTATATAGGAAGGGGAGGGGAAGTCGTGGATCCTATTTTTAGCCAAGGGGAGTGGCCTTGGTGGGCAAGTAACTGCCCACTTCCCATGATTTTCGGCCACTCCCTCCATGACTTGGACCACGTTCCTAAATAATAGGAAGGTAGGCCAAGTCATGGGAATTAGTCTCGAACTTCCTCTTCCCACCTTTTGTGACCCTCAAATCTGACCGTTTGCTTGGCGTCTCCGATGGATGCCACGTGTCCCCACCCGTGTGCTTCCATGTTCGCCCAGATGCCGTGCTCGGGATCCTCCCTGGCTATCGTGCCAGAGATGCCTACGCGTTGCCCGTATGCGCGCCTAGTGGGCGCCCCCTGCCCTTCCATGGCGGGGTGCGCGCGCGCGTGCTAACTTCGCATGCCACCCATGCACGCGCGCATTCTGGCGTCCGCCTGCGCACGGGCCGCCATGCCCTTCGTGCGCCTTCAGCTTGCGTACGACTGTGCATTCTATGGGGCATGCTGGCTTGTCATGCCGCTTGCGTGCCTGCATGCCCTGTTGGTGTCTTTGGGGCGCGCTTTCCCCTGTCCGGCTAAACCCTCTAGTCAAGGTGTTGGCGAGCTCGACTCCCTACCTATTGCCAATTCTGGTGAGTCGTTGCCAAGTCTTGCTATCGCACATGTCCATCGATGACTGGGTCTGCAAGCCTCTCCCGCGATCTATTGCCAGCCTACCCTCAGTGGCTCCCTTGGCCACGCTCAAACCTTCGTGGGTGTTCACTTCGAGATTGACAAACCTCCCTCGGCTGAGCTCCAATGTCCTCGTTGGAGGGTGAGCTCCTCCTGCTTTATTTGAACAGAAGAAAGAAAACAAATCAAAACTACTTGGAACGTTGGTCGCTCCTTATTGGTGGTTCATGGGCGTAACATGCATCACTCCGTGGATGCGTTTTCTGTGGAGCATGTTGCTTGAGCTCCTCGGCTGCAATGCCGTCAGAAAAGGGGACCCCTTGGGTCCATCTGCGCTCGGATTACCGCATCGGGCCAATCCCTTGGATGGTGGTCGGTGTTAGATAGTGAGTGTTCGTCGGCGCCGACTTGATTGGAACACACGCTTATGTCGTCGCCGTCACTATCAACCTGGATCACCTCGATCCCTTGCTCTAAGCCTTGCGCTTGGCCCACCTGTTGCTCTAGAGCGTAAATTGACTAATCCATGTTCTGATTCAGCATCATGAGGGAATGTTCCTTGATTGGAACAAGGGATCGAGGTGATCTTGGTTGACAGTGACTACGACGACATGAGCGTGTGTTCCAATCAAGTCAGCGTCGAGAATGCTCACTATCTAGCACCGACCACCATCCAAGGGATTGCCCCGATGCGGCATGCCCCGTTGGCGTCTTTGGGGCGCGCCTTCCCCTGTCCAGCTAAACCCTCTAGCCGAGGTGTTGGCGCGCTTGACTCCCTACCTGCTGCCAATCCAAGTGAGTCGTTGCCGAGCCTTGCTATCGCACATGTCCACCGATGA

mRNA sequence

ATGAGTCGTCACATCACTCACACTCAGCCACCGTCGATTCAGCCGCCTTTACTGTCTACTACTGAACCACTGCGACGTCGACGTGGGAGAAGCCAGGAAGCAGGCTCGGCCTCTTCTCTGCTAACATCGGCAGAATCCGCGTCGACATCGGAGAAACGCCTTCCTCTCTTTTTTCTCTATCACGGTTGTCGGAGAAGTAACGATCCTCGGGGAAGGATTTCTGTAAAGCAATATTGGATCAATAAGGCAAATGGGTTTCAACTTTTAAGAAAGCCCAAACTCAAGCAAATGGAGTTTTGCCCGACTTGTGGGAACATGCTGCAATTTGAGTTGCCTAATATGGGTAAATCTTCCAGATTCTTCTGCCCGACTTGTCCATATGTGTCCTACTTGGAGAACAGGGTAAAAATCAAAAGAAAGCAACATTTGGTAAAAAAGGAATTAGAACCCATAATCTCTGATGATGACATGAAAAATGCAGCTCAAACTGAAGAGACTCCAAGTCACCAAAAGTCAACAAGTAGCAAGAAAGAAAGAATCCCACTGTCTGAAGTCATAATTGAATTGGAATGCCCGCACGGGACACTAGATGCGTGTGCCAACCAGCAAGCGCCGATAGGCGTGGCCCAGATTGGGCAACAGCGCACTCCACGGGCGAGAGCGCTAGGCGCGCAAGGCCAGGCAGACGCACGGGCGTCACAGGCGCGCGCTAGGCAGCATGCACATGGTGTGCGGGAGACGCAGCCTTGGTGCCATCTTGGCACAAGCGATCAAGCACGGACTCAAGATGAGGCAAGCTTGATCTGGGACATGGGGAAGCGTAAGCCATCAAGCTCTTGGCCATATAGCTTGTATGCACGACACGTGTGGGCGCCCCCTGCCCTTCCATGGCGGGGTGCGCGCGCGCGTGCTAACTTCGCATGCCACCCATGCACGCGCGCATTCTGGCGTCCGCCTGCGCACGGGCCGCCATGCCCTTCGTGCGCCTTCAGCTTGCGTACGACTGTGCATTCTATGGGGCATGCTGGCTTGTCATGCCGCTTGCGTGCCTGCATGCCCTGTTGGTGTCTTTGGGGCGCGCTTTCCCCTGTCCGGCTAAACCCTCTAGTCAAGGTGTTGGCGAGCTCGACTCCCTACCTATTGCCAATTCTGGTGAGTCGTTGCCAAGTCTTGCTATCGCACATGTCCATCGATGACTGGGTCTGCAAGCCTCTCCCGCGATCTATTGCCAGCCTACCCTCAGTGGCTCCCTTGGCCACGCTCAAACCTTCGTGGGTGTTCACTTCGAGATTGACAAACCTCCCTCGGCTGAGCTCCAATGTCCTCAAGAAAGAAAACAAATCAAAACTACTTGGAACGTTGGTCGCTCCTTATTGGTGGTTCATGGGCGTAACATGCATCACTCCGTGGATGCGTTTTCTGTGGAGCATGTTGCTTGAGCTCCTCGGCTGCAATGCCGTCAGAAAAGGGGACCCCTTGGGTCCATCTGCGCTCGGATTACCGCATCGGGCCAATCCCTTGGATGGTGTGAGTGTTCGTCGGCGCCGACTTGATTGGAACACACGCTTATGTCGTCGCCGTCACTATCAACCTGGATCACCTCGATCCCTTGCTCTAAGCCTTGCGCTTGGCCCACCTGTTGCTCTAGAGCGGATCGAGGTGATCTTGGTTGACAGTGACTACGACGACATGAGCGTGTGTTCCAATCAAGTCAGCGTCGAGAATGCTCACTATCTAGCACCGACCACCATCCAAGGGATTGCCCCGATGCGGCATGCCCCGTTGGCGTCTTTGGGGCGCGCCTTCCCCTGTCCAGCTAAACCCTCTAGCCGAGGTGTTGGCGCGCTTGACTCCCTACCTGCTGCCAATCCAAGTGAGTCGTTGCCGAGCCTTGCTATCGCACATGTCCACCGATGA

Coding sequence (CDS)

ATGAGTCGTCACATCACTCACACTCAGCCACCGTCGATTCAGCCGCCTTTACTGTCTACTACTGAACCACTGCGACGTCGACGTGGGAGAAGCCAGGAAGCAGGCTCGGCCTCTTCTCTGCTAACATCGGCAGAATCCGCGTCGACATCGGAGAAACGCCTTCCTCTCTTTTTTCTCTATCACGGTTGTCGGAGAAGTAACGATCCTCGGGGAAGGATTTCTGTAAAGCAATATTGGATCAATAAGGCAAATGGGTTTCAACTTTTAAGAAAGCCCAAACTCAAGCAAATGGAGTTTTGCCCGACTTGTGGGAACATGCTGCAATTTGAGTTGCCTAATATGGGTAAATCTTCCAGATTCTTCTGCCCGACTTGTCCATATGTGTCCTACTTGGAGAACAGGGTAAAAATCAAAAGAAAGCAACATTTGGTAAAAAAGGAATTAGAACCCATAATCTCTGATGATGACATGAAAAATGCAGCTCAAACTGAAGAGACTCCAAGTCACCAAAAGTCAACAAGTAGCAAGAAAGAAAGAATCCCACTGTCTGAAGTCATAATTGAATTGGAATGCCCGCACGGGACACTAGATGCGTGTGCCAACCAGCAAGCGCCGATAGGCGTGGCCCAGATTGGGCAACAGCGCACTCCACGGGCGAGAGCGCTAGGCGCGCAAGGCCAGGCAGACGCACGGGCGTCACAGGCGCGCGCTAGGCAGCATGCACATGGTGTGCGGGAGACGCAGCCTTGGTGCCATCTTGGCACAAGCGATCAAGCACGGACTCAAGATGAGGCAAGCTTGATCTGGGACATGGGGAAGCGTAAGCCATCAAGCTCTTGGCCATATAGCTTGTATGCACGACACGTGTGGGCGCCCCCTGCCCTTCCATGGCGGGGTGCGCGCGCGCGTGCTAACTTCGCATGCCACCCATGCACGCGCGCATTCTGGCGTCCGCCTGCGCACGGGCCGCCATGCCCTTCGTGCGCCTTCAGCTTGCGTACGACTGTGCATTCTATGGGGCATGCTGGCTTGTCATGCCGCTTGCGTGCCTGCATGCCCTGTTGGTGTCTTTGGGGCGCGCTTTCCCCTGTCCGGCTAAACCCTCTAGTCAAGGTGTTGGCGAGCTCGACTCCCTACCTATTGCCAATTCTGGTGAGTCGTTGCCAAGTCTTGCTATCGCACATGTCCATCGATGACTGGGTCTGCAAGCCTCTCCCGCGATCTATTGCCAGCCTACCCTCAGTGGCTCCCTTGGCCACGCTCAAACCTTCGTGGGTGTTCACTTCGAGATTGACAAACCTCCCTCGGCTGAGCTCCAATGTCCTCAAGAAAGAAAACAAATCAAAACTACTTGGAACGTTGGTCGCTCCTTATTGGTGGTTCATGGGCGTAACATGCATCACTCCGTGGATGCGTTTTCTGTGGAGCATGTTGCTTGAGCTCCTCGGCTGCAATGCCGTCAGAAAAGGGGACCCCTTGGGTCCATCTGCGCTCGGATTACCGCATCGGGCCAATCCCTTGGATGGTGTGAGTGTTCGTCGGCGCCGACTTGATTGGAACACACGCTTATGTCGTCGCCGTCACTATCAACCTGGATCACCTCGATCCCTTGCTCTAAGCCTTGCGCTTGGCCCACCTGTTGCTCTAGAGCGGATCGAGGTGATCTTGGTTGACAGTGACTACGACGACATGAGCGTGTGTTCCAATCAAGTCAGCGTCGAGAATGCTCACTATCTAGCACCGACCACCATCCAAGGGATTGCCCCGATGCGGCATGCCCCGTTGGCGTCTTTGGGGCGCGCCTTCCCCTGTCCAGCTAAACCCTCTAGCCGAGGTGTTGGCGCGCTTGACTCCCTACCTGCTGCCAATCCAAGTGAGTCGTTGCCGAGCCTTGCTATCGCACATGTCCACCGATGA

Protein sequence

MSRHITHTQPPSIQPPLLSTTEPLRRRRGRSQEAGSASSLLTSAESASTSEKRLPLFFLYHGCRRSNDPRGRISVKQYWINKANGFQLLRKPKLKQMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEETPSHQKSTSSKKERIPLSEVIIELECPHGTLDACANQQAPIGVAQIGQQRTPRARALGAQGQADARASQARARQHAHGVRETQPWCHLGTSDQARTQDEASLIWDMGKRKPSSSWPYSLYARHVWAPPALPWRGARARANFACHPCTRAFWRPPAHGPPCPSCAFSLRTTVHSMGHAGLSCRLRACMPCWCLWGALSPVRLNPLVKVLASSTPYLLPILVSRCQVLLSHMSIDDWVCKPLPRSIASLPSVAPLATLKPSWVFTSRLTNLPRLSSNVLKKENKSKLLGTLVAPYWWFMGVTCITPWMRFLWSMLLELLGCNAVRKGDPLGPSALGLPHRANPLDGVSVRRRRLDWNTRLCRRRHYQPGSPRSLALSLALGPPVALERIEVILVDSDYDDMSVCSNQVSVENAHYLAPTTIQGIAPMRHAPLASLGRAFPCPAKPSSRGVGALDSLPAANPSESLPSLAIAHVHR
Homology
[Close]
BLAST of CaUC10G191490 vs. NCBI nr
Match: KAG7029162.1 (DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.4 bits (376), Expect = 1.0e-31
Identity = 78/111 (70.27%), Postives = 85/111 (76.58%), Query Frame = 0 

Query: 56  LFFLYHGCRRSNDPRGRISVKQYWINKANGFQLLRKPKLKQMEFCPTCGNMLQFELPNMG 115
           L FLY  C   +   G  S+ ++ + K   F      +  +MEFCPTCGNMLQFELPNMG
Sbjct: 10  LLFLY--CPPPDSLLGFNSLARHSVRKRLSF-----GRTWRMEFCPTCGNMLQFELPNMG 69

Query: 116 KSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEET 167
           KSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTE T
Sbjct: 70  KSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEAT 113

[Close]
BLAST of CaUC10G191490 vs. NCBI nr
Match: KAG6597716.1 (DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.9 bits (372), Expect = 3.0e-31
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = 0 

Query: 96  QMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDD 155
           +MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDD
Sbjct: 37  RMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDD 96

Query: 156 DMKNAAQTEET 167
           DMKNAAQTE T
Sbjct: 97  DMKNAAQTEAT 107

[Close]
BLAST of CaUC10G191490 vs. NCBI nr
Match: XP_038903069.1 (DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida])

HSP 1 Score: 147.5 bits (371), Expect = 3.9e-31
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0 

Query: 97  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 156
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 157 MKNAAQTEET 167
           MKNAAQTE T
Sbjct: 61  MKNAAQTEAT 70

[Close]
BLAST of CaUC10G191490 vs. NCBI nr
Match: XP_004141147.1 (DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus] >XP_008465337.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Cucumis melo] >XP_008465338.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Cucumis melo] >KGN59770.1 hypothetical protein Csa_002120 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 3.9e-31
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0 

Query: 97  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 156
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 157 MKNAAQTEET 167
           MKNAAQTE T
Sbjct: 61  MKNAAQTEAT 70

[Close]
BLAST of CaUC10G191490 vs. NCBI nr
Match: XP_022932603.1 (DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata] >XP_022932604.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata] >XP_022972319.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita maxima] >XP_022972320.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita maxima] >XP_023539106.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita pepo subsp. pepo] >XP_023539107.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.5 bits (371), Expect = 3.9e-31
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0 

Query: 97  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 156
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 157 MKNAAQTEET 167
           MKNAAQTE T
Sbjct: 61  MKNAAQTEAT 70

[Close]
BLAST of CaUC10G191490 vs. ExPASy TrEMBL
Match: A0A6J1IB59 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470892 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.9e-31
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0 

Query: 97  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 156
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 157 MKNAAQTEET 167
           MKNAAQTE T
Sbjct: 61  MKNAAQTEAT 70

[Close]
BLAST of CaUC10G191490 vs. ExPASy TrEMBL
Match: A0A1S3CQ50 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502981 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.9e-31
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0 

Query: 97  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 156
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 157 MKNAAQTEET 167
           MKNAAQTE T
Sbjct: 61  MKNAAQTEAT 70

[Close]
BLAST of CaUC10G191490 vs. ExPASy TrEMBL
Match: A0A6J1EXG3 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111439113 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.9e-31
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0 

Query: 97  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 156
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 157 MKNAAQTEET 167
           MKNAAQTE T
Sbjct: 61  MKNAAQTEAT 70

[Close]
BLAST of CaUC10G191490 vs. ExPASy TrEMBL
Match: A0A0A0LCM4 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G844880 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.9e-31
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0 

Query: 97  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 156
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 157 MKNAAQTEET 167
           MKNAAQTE T
Sbjct: 61  MKNAAQTEAT 70

[Close]
BLAST of CaUC10G191490 vs. ExPASy TrEMBL
Match: A0A6J1DGL3 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111020260 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.0e-29
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0 

Query: 97  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 156
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISD+D
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDED 60

Query: 157 MKNAAQTEET 167
           MKNAAQTE T
Sbjct: 61  MKNAAQTEAT 70

[Close]
BLAST of CaUC10G191490 vs. TAIR 10
Match: AT4G07950.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 92.4 bits (228), Expect = 1.4e-18
Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 0 

Query: 97  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 156
           MEFCPTCGN+L++E    G SSRFFC TCPYV+ +E RV+IK+KQ LVKK +EP+++ DD
Sbjct: 1   MEFCPTCGNLLRYE---GGGSSRFFCSTCPYVANIERRVEIKKKQLLVKKSIEPVVTKDD 60

Query: 157 MKNAAQTE 165
           +  AA+TE
Sbjct: 61  IPTAAETE 65

[Close]
BLAST of CaUC10G191490 vs. TAIR 10
Match: AT1G01210.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 89.0 bits (219), Expect = 1.5e-17
Identity = 39/68 (57.35%), Postives = 55/68 (80.88%), Query Frame = 0 

Query: 97  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 156
           MEFCPTCGN+L++E    G +SRFFC TCPYV+Y++ +V+IK+KQ LVKK +E +++ DD
Sbjct: 1   MEFCPTCGNLLRYE---GGGNSRFFCSTCPYVAYIQRQVEIKKKQLLVKKSIEAVVTKDD 60

Query: 157 MKNAAQTE 165
           +  AA+TE
Sbjct: 61  IPTAAETE 65

The following BLAST results are available for this feature:
BLAST of CaUC10G191490 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029162.11.0e-3170.27DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma s... [more]
KAG6597716.13.0e-3197.18DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma s... [more]
XP_038903069.13.9e-3198.57DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida][more]
XP_004141147.13.9e-3198.57DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus] >XP_008465337.1 ... [more]
XP_022932603.13.9e-3198.57DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata] >XP_0229... [more]
BLAST of CaUC10G191490 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC10G191490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IB591.9e-3198.57DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470892 ... [more]
A0A1S3CQ501.9e-3198.57DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502981 PE=3... [more]
A0A6J1EXG31.9e-3198.57DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11143911... [more]
A0A0A0LCM41.9e-3198.57DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G844880 P... [more]
A0A6J1DGL31.0e-2992.86DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110202... [more]
BLAST of CaUC10G191490 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G07950.11.4e-1861.76DNA-directed RNA polymerase, subunit M, archaeal [more]
AT1G01210.11.5e-1757.35DNA-directed RNA polymerase, subunit M, archaeal [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001529DNA-directed RNA polymerase, M/15kDa subunitSMARTSM00661rpol9cneucoord: 98..152
e-value: 7.0E-8
score: 42.2
IPR029401Nudix hydrolase, N-terminalPFAMPF14803Nudix_N_2coord: 99..130
e-value: 1.7E-6
score: 27.9
NoneNo IPR availableGENE3D2.20.70.10coord: 96..130
e-value: 7.0E-6
score: 27.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..179
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19
NoneNo IPR availablePANTHERPTHR11239:SF12DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10coord: 97..167
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 97..167
IPR019761DNA-directed RNA polymerase M, 15kDa subunit, conserved sitePROSITEPS01030RNA_POL_M_15KDcoord: 99..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC10G191490.1CaUC10G191490.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006386 termination of RNA polymerase III transcription
biological_process GO:0042779 tRNA 3'-trailer cleavage
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005730 nucleolus
cellular_component GO:0005666 RNA polymerase III complex
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding