CaUC10G189790 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC10G189790
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr10: 23853378 .. 23856423 (-)
RNA-Seq ExpressionCaUC10G189790
SyntenyCaUC10G189790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTCCACTCAGCGTATATGAAATTTAAAATATATTGAGATTAAGAAACTGCTTACAGCAAGCCAAAATTGGAATACAACTTCCTTCGATCATCCCGGGTAAGCTCAGTGCCAATACTACAATAGATGAGATGCACTGAATTAAAGGAGATGCTGAAGCATAATAAACACCACAAGATTTCTTGTGACCCAGTAAACATTTATTGACCAGCATTAACATACCTATTTATGGTAATATTCACAGCCCTTCTATCAGCCTCAAAAGCAAGGAGGTCAGACATGATCTCAGCAGTGGCACCACCCAGTTTCTACCTCAAAAATCAAATACAAATAGATAAGAAACTGGGATTTTTATGATAGAAAATGAAGATTTTATAACTTATCAATCTCCATTCACCTGACAGAACCTGTAGAAATCCTCTAGGTATGCCTTATAGAGAGTGTTCCTCATAATTTCTATGTTCATGTCATCCAAATCCTAGCAAAAATAAGAGGAAACACCAAACCATAGCTTTAGCAGGAATATGTACTGTACTTAATAGATAAAATCATTGCAGGATTAGCTTGTGCAGTGATAACGCATCAACCATGAATATGCATTAGCGTATCTAGCATCATCTAATATGACTTGCGAGGAAGTAATTATGCAAACCTAGTTTAACTCAAAACTATAATGAAAATTCAGTTCCCTAATTGAGTTCTCTGACACCAGTGCCTTCATAAAACAAAAAGTTCACAAAATCTTTTTAGAAAAGAAAATTAAACACTATCAATTATGCAATTACGGCTGTAAATACAATAGTCATCATATCATGAAACATATTCTACTACTTTAAAGTAGAATGCAAAAGATAATAATAATAATCAAAGCCAATAAAGGAAAATGAACGGAGAGAAACATTATACCTCAGATGTGATACACTCTGAAAAGTATGGAGCCAAAGGGGTGTCAACAAGCACCAATCTATAAAGTTCCCGCATATTCTGAGCAACTGCCAAGGTAGCAATGCTAGCAAAGAATAAAAGGAAGAAAAAATGAGAACAGTTTATGATACCGTCAATTTTAGGGTATGATATACACTTTTTCTTGTTTGGTAAGGAAATATCAGGCAACACAATCGGAACGCAAAAATTAACCGTTGATAGTACCTGTCAAACATGCCCAAAGGGTGGCACTTCTCCAACAGTTCCTGAACATCTCTCTCATGCAAGGTTCCAGTAACAATAAGGACAACATTGTCTATCATGTGACCATATCTGAGTAAAAAATTCCATCAAGTTGAAAGTTCAAAATTATGAGAGGGCAACAAAGCAACAGACGCTGAAAATACAAAAAATAACTTGCAGAAAAGGATCTCAACATACGTGATATACTCCAAGAAGGTAGACAGAGGCTCAGTGGCTTGGCACAACATGTGCTTATACTCGTCAACCAGTTTAAGGGTGCATTTCTCCACAATGGTTGTTGTATGTAATGGAGATGGTTCTACAAAATAAGTTGAAATTAGCATGCAAACAACATCTGACACCTTCAGGTCAGAAATGGAACTTATTCATGCAGGTAATCGTTGAGTTAGACTAAACTATGCACTAATCACATAAGATATTCAGAGTAATATTAATTATTCTAAAATTTACATACTGAGCAATATTCTATTTCTCATATTGTCAACTACAATTGTGATCTCTTCATGGTGCCCTATTCTAACGGTCAAACAATCCTTCTACTCTTGAATATGAATCCTAAATCCTTGATGAACTCTGAATTACAATTTCTCGGCATAAAGTATCACACAACAGCAAAGCCAATCTTTCTCCTTGAAATGCATGGACAAATACTGTATGGGACACCTCACCGTTCATCAAAAAAGAAAAACGGAGGGTCTCATCCAAAACCACATCGATCCTCTGCATTTACCACTTCCAAAAATAGCCCATCAGCTCCATTACTCAAAAGTCAATCACAAAGAAGCAGTGTTAACTATTGTACCCACCCGCGACATTGCCAAAAACAGAATTGTATTCCAACAGTTAATCAAGAAATAGTTACTTGATGCTTTACATTAAAGACATGGGACTCGAGAGTATACTGCAAATCTGGTGGAATAAGAGGCCTAACTTCAAGCTCCAAATACCACAACAGAATCCATATTCCTTGTTCAAATTAAATTCCCAGCTGGGTCAAAACAACAATAAACTCAACTCCCTGAAAAACCATTACAAGATCCAAGCATTACACGTCCATTTCCCAATTTCATTGACAGTTTGTTATCCCCAGCAAAGCAATTACTCTACCAATTTCCTTCCTGTACAACTAATCCAACGACCTAAATACACTAAAATTCCCCCAACTTTCACATCCAATTTCATAATTCATCTAGGGAAAAAAAAAAAAAAAATCAGGGCTCACCCACCGTTTTGGAGATAAGGACCATACTCAGTGGCAGAGAGGTGCATCTTGATATCATCTAGGGTTTCGCACTGACACAAATTGTTATAATCAGCGGCGGTCAGCAAGCCAGCCCTATGTCCACGGACGATGGCCTCCAAATAGCCTCCATGAATGTTGAAGGTAAGCGCTTCAAAACCATACATTCTCTGGAAACTTGATTGAAACGGTAAGGAAATGAAAGAGAAGAAGATCTGGAGTGGGGAAAGGGAAGGGGAGAGCAATGGCAAGAAACCAAACGCCTCCTCCGAGAGAAACCTAACGATGCAGAACTGTGAAAGAGAATTTACAAGGCCAGTTGAAGACGAAGGAAGAGAAAGGCCAAGGAATCGGAGAATATGAAAGTCTTCTTTTGCGATCCGAGTTGAAGAATCAGCAATTCGATTATCAAGAACAGATGGAAGATGATGATGCCGATCGATCTGATTCTGATTGGGGAGAAAGGGTCAGAATAATTTGTGATATTACCCTATTGCCCTTTTTTATTTATTATTTGTATGAATAGACCAGCTGAAACGCATGGGCTGGGCTTCGAGTGTTGGGCTCGGCCTTCTTATTTTGGGTTTTCGTGGTGAGTTTGTACGACATTACTAA

mRNA sequence

ATGATGAAACTGCTTACAGCAAGCCAAAATTGGAATACAACTTCCTTCGATCATCCCGGTATCACACAACAGCAAAGCCAATCTTTCTCCTTGAAATGCATGGACAAATACTGTATGGGACACCTCACCGTTCATCAAAAAAGAAAAACGGAGGGTCTCATCCAAAACCACATCGATCCTCTGCATTTACCACTTCCAAAAATAGCCCATCAGCTCCATTACTCAAAAGTCAATCACAAAGAAGCAGTGTTAACTATTGTACCCACCCGCGACATTGCCAAAAACAGAATTGGTTTCGCACTGACACAAATTGTTATAATCAGCGGCGGTCAGCAAGCCAGCCCTATGTCCACGGACGATGGCCTCCAAATAGCCTCCATGAATGTTGAAGAGAAGAAGATCTGGAGTGGGGAAAGGGAAGGGGAGAGCAATGGCAAGAAACCAAACGCCTCCTCCGAGAGAAACCTAACGATGCAGAACTGTGAAAGAGAATTTACAAGGCCAACGAAGGAAGAGAAAGGCCAAGGAATCGGAGAATATGAAAGTCTTCTTTTGCGATCCGAGTTGAAGAATCAGCAATTCGATTATCAAGAACAGATGGAAGATGATGATGCCGATCGATCTGATTCTGATTGGGGAGAAAGGCTGAAACGCATGGGCTGGGCTTCGAGTGTTGGGCTCGGCCTTCTTATTTTGGGTTTTCGTGGTGAGTTTGTACGACATTACTAA

Coding sequence (CDS)

ATGATGAAACTGCTTACAGCAAGCCAAAATTGGAATACAACTTCCTTCGATCATCCCGGTATCACACAACAGCAAAGCCAATCTTTCTCCTTGAAATGCATGGACAAATACTGTATGGGACACCTCACCGTTCATCAAAAAAGAAAAACGGAGGGTCTCATCCAAAACCACATCGATCCTCTGCATTTACCACTTCCAAAAATAGCCCATCAGCTCCATTACTCAAAAGTCAATCACAAAGAAGCAGTGTTAACTATTGTACCCACCCGCGACATTGCCAAAAACAGAATTGGTTTCGCACTGACACAAATTGTTATAATCAGCGGCGGTCAGCAAGCCAGCCCTATGTCCACGGACGATGGCCTCCAAATAGCCTCCATGAATGTTGAAGAGAAGAAGATCTGGAGTGGGGAAAGGGAAGGGGAGAGCAATGGCAAGAAACCAAACGCCTCCTCCGAGAGAAACCTAACGATGCAGAACTGTGAAAGAGAATTTACAAGGCCAACGAAGGAAGAGAAAGGCCAAGGAATCGGAGAATATGAAAGTCTTCTTTTGCGATCCGAGTTGAAGAATCAGCAATTCGATTATCAAGAACAGATGGAAGATGATGATGCCGATCGATCTGATTCTGATTGGGGAGAAAGGCTGAAACGCATGGGCTGGGCTTCGAGTGTTGGGCTCGGCCTTCTTATTTTGGGTTTTCGTGGTGAGTTTGTACGACATTACTAA

Protein sequence

MMKLLTASQNWNTTSFDHPGITQQQSQSFSLKCMDKYCMGHLTVHQKRKTEGLIQNHIDPLHLPLPKIAHQLHYSKVNHKEAVLTIVPTRDIAKNRIGFALTQIVIISGGQQASPMSTDDGLQIASMNVEEKKIWSGEREGESNGKKPNASSERNLTMQNCEREFTRPTKEEKGQGIGEYESLLLRSELKNQQFDYQEQMEDDDADRSDSDWGERLKRMGWASSVGLGLLILGFRGEFVRHY
Homology
[Close]
BLAST of CaUC10G189790 vs. NCBI nr
Match: KGN59586.1 (hypothetical protein Csa_002399 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-13
Identity = 51/87 (58.62%), Postives = 58/87 (66.67%), Query Frame = 0 

Query: 129 VEEKKIWSGEREGESNGKKPNASSERNLTMQNCEREFTRPTKEEKGQGIGEYESLLLRSE 188
           ++E+KIWSGEREGESNGKKPNASSERNLTMQN                        LRSE
Sbjct: 1   MKEEKIWSGEREGESNGKKPNASSERNLTMQNS----------------------FLRSE 60

Query: 189 LKNQQFDYQEQM---EDDDADRSDSDW 213
           L+NQ+ DYQE+    +DDDADRSDSDW
Sbjct: 61  LQNQEIDYQEEQMEDDDDDADRSDSDW 65

[Close]
BLAST of CaUC10G189790 vs. ExPASy TrEMBL
Match: A0A0A0LHS5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G827280 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.8e-14
Identity = 51/87 (58.62%), Postives = 58/87 (66.67%), Query Frame = 0 

Query: 129 VEEKKIWSGEREGESNGKKPNASSERNLTMQNCEREFTRPTKEEKGQGIGEYESLLLRSE 188
           ++E+KIWSGEREGESNGKKPNASSERNLTMQN                        LRSE
Sbjct: 1   MKEEKIWSGEREGESNGKKPNASSERNLTMQNS----------------------FLRSE 60

Query: 189 LKNQQFDYQEQM---EDDDADRSDSDW 213
           L+NQ+ DYQE+    +DDDADRSDSDW
Sbjct: 61  LQNQEIDYQEEQMEDDDDDADRSDSDW 65

The following BLAST results are available for this feature:
BLAST of CaUC10G189790 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59586.11.8e-1358.62hypothetical protein Csa_002399 [Cucumis sativus][more]
BLAST of CaUC10G189790 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC10G189790 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHS58.8e-1458.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G827280 PE=4 SV=1[more]
BLAST of CaUC10G189790 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..176
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..163

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC10G189790.1CaUC10G189790.1mRNA