CaUC09G178230 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC09G178230
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionGPI-anchored protein LLG1
LocationCiama_Chr09: 37480605 .. 37481037 (+)
RNA-Seq ExpressionCaUC09G178230
SyntenyCaUC09G178230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAAATACAAAAATACAAAACATATTCTAAGGCGAAATTCAATTCAACAGCCTGTCTCTCGCCTTCTCGTCGGAGAAGAAGAAATTCTCTCTCTTTCTTTCTCTCTCTCGCCGGAATTATGCTCTCCGATCGATCCTTCTGCAACTACTTCACGATGCTTCTTCTCTTCATCCTCTCACTGCTTTTCGCTTCTTCTTCCTCCACTTCCATTTCAGGTACTTTAGATTCACATTCTCAAATTTACCTCTCTTTCTTCTTCTCATTCTCCTCCTCCTTCTTCTCTATTTCTGTATTTAACTTCACTTTTTATGTTTTCCAGGCGATGTCTTTGAATCGAAGCTTTCAATCGGTCGGAACCTCCTACAGGCTAAAAAAGGTTCCACCCTTTCTCTTCAACATCTTGAGTTTGTTTTTGCTGAGTTCGTAATCTAG

mRNA sequence

CAAAAATACAAAAATACAAAACATATTCTAAGGCGAAATTCAATTCAACAGCCTGTCTCTCGCCTTCTCGTCGGAGAAGAAGAAATTCTCTCTCTTTCTTTCTCTCTCTCGCCGGAATTATGCTCTCCGATCGATCCTTCTGCAACTACTTCACGATGCTTCTTCTCTTCATCCTCTCACTGCTTTTCGCTTCTTCTTCCTCCACTTCCATTTCAGGCGATGTCTTTGAATCGAAGCTTTCAATCGGTCGGAACCTCCTACAGGCTAAAAAAGGTTCCACCCTTTCTCTTCAACATCTTGAGTTTGTTTTTGCTGAGTTCGTAATCTAG

Coding sequence (CDS)

ATGCTCTCCGATCGATCCTTCTGCAACTACTTCACGATGCTTCTTCTCTTCATCCTCTCACTGCTTTTCGCTTCTTCTTCCTCCACTTCCATTTCAGGCGATGTCTTTGAATCGAAGCTTTCAATCGGTCGGAACCTCCTACAGGCTAAAAAAGGTTCCACCCTTTCTCTTCAACATCTTGAGTTTGTTTTTGCTGAGTTCGTAATCTAG

Protein sequence

MLSDRSFCNYFTMLLLFILSLLFASSSSTSISGDVFESKLSIGRNLLQAKKGSTLSLQHLEFVFAEFVI
Homology
BLAST of CaUC09G178230 vs. NCBI nr
Match: XP_038896951.1 (GPI-anchored protein LLG1-like [Benincasa hispida])

HSP 1 Score: 83.6 bits (205), Expect = 7.5e-13
Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 0

Query: 1  MLSDRSFCNYFTMLLLFILSLLFASSSSTSISGDVFESKLSIGRNLLQAKKGSTLSLQHL 60
          MLSDRSFCN FTMLLL  LSLLF SSSSTSISGDVFESK+SIGRNLLQAKK   ++ + L
Sbjct: 1  MLSDRSFCN-FTMLLLLFLSLLFTSSSSTSISGDVFESKVSIGRNLLQAKKACPVNFEFL 60

Query: 61 EF 63
           +
Sbjct: 61 NY 61

BLAST of CaUC09G178230 vs. NCBI nr
Match: XP_022936417.1 (GPI-anchored protein LLG1 [Cucurbita moschata])

HSP 1 Score: 77.0 bits (188), Expect = 7.0e-11
Identity = 42/62 (67.74%), Postives = 53/62 (85.48%), Query Frame = 0

Query: 1  MLSDRSFCNYFTMLLLFILSLLFASSSSTSISGDVFESKLSIGRNLLQAKKGSTLSLQHL 60
          M+SDRSFCN F+MLLLF LSLLF++SSSTSISGDVFESK+ IGR+LLQA+K   ++ + L
Sbjct: 1  MVSDRSFCN-FSMLLLFFLSLLFSTSSSTSISGDVFESKVLIGRSLLQARKACPVNFEFL 60

Query: 61 EF 63
           +
Sbjct: 61 NY 61

BLAST of CaUC09G178230 vs. NCBI nr
Match: KAG6592129.1 (GPI-anchored protein LLG1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.0 bits (188), Expect = 7.0e-11
Identity = 42/62 (67.74%), Postives = 53/62 (85.48%), Query Frame = 0

Query: 1  MLSDRSFCNYFTMLLLFILSLLFASSSSTSISGDVFESKLSIGRNLLQAKKGSTLSLQHL 60
          M+SDRSFCN F+MLLLF LSLLF++SSSTSISGDVFESK+ IGR+LLQA+K   ++ + L
Sbjct: 1  MVSDRSFCN-FSMLLLFFLSLLFSTSSSTSISGDVFESKVLIGRSLLQARKACPVNFEFL 60

Query: 61 EF 63
           +
Sbjct: 61 NY 61

BLAST of CaUC09G178230 vs. NCBI nr
Match: KAG7025004.1 (GPI-anchored protein LLG1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.0 bits (188), Expect = 7.0e-11
Identity = 42/62 (67.74%), Postives = 53/62 (85.48%), Query Frame = 0

Query: 1  MLSDRSFCNYFTMLLLFILSLLFASSSSTSISGDVFESKLSIGRNLLQAKKGSTLSLQHL 60
          M+SDRSFCN F+MLLLF LSLLF++SSSTSISGDVFESK+ IGR+LLQA+K   ++ + L
Sbjct: 1  MVSDRSFCN-FSMLLLFFLSLLFSTSSSTSISGDVFESKVLIGRSLLQARKACPVNFEFL 60

Query: 61 EF 63
           +
Sbjct: 61 NY 61

BLAST of CaUC09G178230 vs. NCBI nr
Match: XP_023536509.1 (GPI-anchored protein LLG1-like [Cucurbita pepo subsp. pepo] >XP_023536510.1 GPI-anchored protein LLG1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 41/62 (66.13%), Postives = 53/62 (85.48%), Query Frame = 0

Query: 1   MLSDRSFCNYFTMLLLFILSLLFASSSSTSISGDVFESKLSIGRNLLQAKKGSTLSLQHL 60
           M+SDRSFCN F+ML+LF LSLLF++SSSTSISGDVFESK+ IGR+LLQA+K   ++ + L
Sbjct: 52  MVSDRSFCN-FSMLILFFLSLLFSTSSSTSISGDVFESKVLIGRSLLQARKACPVNFEFL 111

Query: 61  EF 63
            +
Sbjct: 112 NY 112

BLAST of CaUC09G178230 vs. ExPASy TrEMBL
Match: A0A6J1F8E1 (GPI-anchored protein LLG1 OS=Cucurbita moschata OX=3662 GN=LOC111443044 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.4e-11
Identity = 42/62 (67.74%), Postives = 53/62 (85.48%), Query Frame = 0

Query: 1  MLSDRSFCNYFTMLLLFILSLLFASSSSTSISGDVFESKLSIGRNLLQAKKGSTLSLQHL 60
          M+SDRSFCN F+MLLLF LSLLF++SSSTSISGDVFESK+ IGR+LLQA+K   ++ + L
Sbjct: 1  MVSDRSFCN-FSMLLLFFLSLLFSTSSSTSISGDVFESKVLIGRSLLQARKACPVNFEFL 60

Query: 61 EF 63
           +
Sbjct: 61 NY 61

BLAST of CaUC09G178230 vs. ExPASy TrEMBL
Match: A0A6J1IFC4 (GPI-anchored protein LLG1-like OS=Cucurbita maxima OX=3661 GN=LOC111476731 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.2e-10
Identity = 40/62 (64.52%), Postives = 53/62 (85.48%), Query Frame = 0

Query: 1  MLSDRSFCNYFTMLLLFILSLLFASSSSTSISGDVFESKLSIGRNLLQAKKGSTLSLQHL 60
          M+S+RSFCN F+MLLLF +SLLF++SSSTSISGDVFESK+ IGR+LLQA+K   ++ + L
Sbjct: 1  MVSNRSFCN-FSMLLLFFISLLFSTSSSTSISGDVFESKVLIGRSLLQARKACPVNFEFL 60

Query: 61 EF 63
           +
Sbjct: 61 NY 61

BLAST of CaUC09G178230 vs. ExPASy TrEMBL
Match: A0A6J1FTS4 (GPI-anchored protein LLG1-like OS=Cucurbita moschata OX=3662 GN=LOC111446763 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-10
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 0

Query: 2  LSDRSFCNYFTMLLLFILSLLFASSSSTSISGDVFESKLSIGRNLLQAKKGSTLSLQHLE 61
          +SDRSFCN F+MLLLF +SLLF +SSSTSIS DVFESK SIGR LLQAKK   ++ + L+
Sbjct: 3  VSDRSFCN-FSMLLLFFISLLFTASSSTSISVDVFESKASIGRGLLQAKKACPVNFEFLD 62

Query: 62 F 63
          +
Sbjct: 63 Y 62

BLAST of CaUC09G178230 vs. ExPASy TrEMBL
Match: A0A6J1J2M4 (GPI-anchored protein LLG1-like OS=Cucurbita maxima OX=3661 GN=LOC111480694 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.7e-10
Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 0

Query: 2  LSDRSFCNYFTMLLLFILSLLFASSSSTSISGDVFESKLSIGRNLLQAKKGSTLSLQHLE 61
          +SDRSFCN F+MLLLF +SLLF +SSSTSIS DVFESK SIGR LLQAKK   ++ + L 
Sbjct: 3  VSDRSFCN-FSMLLLFFISLLFTASSSTSISADVFESKASIGRGLLQAKKPCPVNFEFLN 62

Query: 62 F 63
          +
Sbjct: 63 Y 62

BLAST of CaUC09G178230 vs. ExPASy TrEMBL
Match: A0A6J1CGJ1 (GPI-anchored protein LLG1-like OS=Momordica charantia OX=3673 GN=LOC111010609 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.3e-10
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 0

Query: 1  MLSDRSFCNYFTMLLLFILSLLFASSSSTSISGDVFESKLSIGRNLLQAKKGSTLSLQHL 60
          M+SDR FCN F++LLLF LSLLF+ SS TSISGDVFES++SIGR+LLQAKK   ++ + L
Sbjct: 1  MVSDRYFCN-FSLLLLFFLSLLFSPSSFTSISGDVFESQVSIGRSLLQAKKACPVNFEFL 60

Query: 61 EF 63
           +
Sbjct: 61 NY 61

BLAST of CaUC09G178230 vs. TAIR 10
Match: AT4G26466.1 (lorelei )

HSP 1 Score: 40.0 bits (92), Expect = 8.8e-04
Identity = 22/51 (43.14%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 13 MLLLFILSLLFASSSSTSISGDVFESKLSI-GRNLLQAKKGSTLSLQHLEF 63
          +L  F+++LL + SSS+SIS  VFES+ S+ GRNL  AKK   ++ +++++
Sbjct: 5  LLFFFLMALLVSLSSSSSISDGVFESQTSVSGRNLRHAKKKCEVNFEYMDY 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038896951.17.5e-1375.81GPI-anchored protein LLG1-like [Benincasa hispida][more]
XP_022936417.17.0e-1167.74GPI-anchored protein LLG1 [Cucurbita moschata][more]
KAG6592129.17.0e-1167.74GPI-anchored protein LLG1, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7025004.17.0e-1167.74GPI-anchored protein LLG1 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023536509.11.2e-1066.13GPI-anchored protein LLG1-like [Cucurbita pepo subsp. pepo] >XP_023536510.1 GPI-... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1F8E13.4e-1167.74GPI-anchored protein LLG1 OS=Cucurbita moschata OX=3662 GN=LOC111443044 PE=4 SV=... [more]
A0A6J1IFC42.2e-1064.52GPI-anchored protein LLG1-like OS=Cucurbita maxima OX=3661 GN=LOC111476731 PE=4 ... [more]
A0A6J1FTS42.9e-1067.21GPI-anchored protein LLG1-like OS=Cucurbita moschata OX=3662 GN=LOC111446763 PE=... [more]
A0A6J1J2M43.7e-1067.21GPI-anchored protein LLG1-like OS=Cucurbita maxima OX=3661 GN=LOC111480694 PE=4 ... [more]
A0A6J1CGJ18.3e-1064.52GPI-anchored protein LLG1-like OS=Momordica charantia OX=3673 GN=LOC111010609 PE... [more]
Match NameE-valueIdentityDescription
AT4G26466.18.8e-0443.14lorelei [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC09G178230.1CaUC09G178230.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane