CaUC04G068310 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCATTAAGCGCTTCTCTACTGGCTTCATCACCATCAAATCCATCGCCGATTGGAAAAAGCTACTCGGCCTCACAATCCCTGTTATTCGATTCATCCGGAGGTACCCAACTCTCTTTCACGAATTTCCTCATTCTCATTACGCTAATTTTCCTTGCTTTCGTTTGATGGATACCGCACTGTTTTTAGATTAGCAAGAGAGTAGTATACACCAAATGCACAGGAGCGACATTGTTGAAAGACTTTGTAGAGTACTTATGATGATGAAATCTAGGGCCCTTCCTCTTCAATCCTTGGTCCCATAGAAGGGGATCTTGGTCTGCCATGTGGTTTGAGGTCATTGATTCCTAGGTATTCAGATCATTTTCAATTAGTGAAGGTTTCCAATGGGGATTGGTGTCTCCGGCTTGTGGAATGGCACAAGGAATTTGAAATTTCAGCCTTGCGAAGGAGCAATGAGAGCTCTGAATTGGGAGATGCGTATAGGCAATTCAAAAGGGGGCGTACTGATAACTTGTAGAAATACAAGTTATTATTGTCTTTCTCGTAGAAAAATAGAGTTTAAGTAGAGAATTATGCAGTATTTTGAGTTAAATTCTATTGATAAATCTTTCTATGCGTTTTACTCTTGTAAATTGAGGAAGATAATTGTTTTGAAGCTTTTTAAGCCTAAAACGCATGCTTTAACATAGGAACGCGAGCAACCCATGGATGCGTTGGCATTCCTTTAACGCAGGTGGATACGTTGGCAACCCTTTAACGCAGGAACGCAAGCAACCCATGGATGCGTTGACATACTTGAACGCAGGAACCTAACTTTTCCATGGACACATATCAACCAGAAACACAAGGCAACAAAGAATCAGATAAGAATCTTGAGAGATTGTTGGAAGATTGATATGCTTGATATGCGGCAAGAGTGGTGGAACTAAATTAAATCGGAAATCACACGATTAGGTGAGATGGACGCAAGGCAGAAATTCAGCCTCCAATCATGCAGATTTGCCAGCGATTGGAACGCAACATCTATAAAAGGGCAGACCTGAAGGCTAAAATGTTGTTGAACCTCTCGGAAGAATTTCTAAGTGACAGTAGAGTTCTGTCCAGATGACAACTGGAGACAAATTGCTCAACAGAGAAGAGTCTTCCCTCTATCTGACCATTTCACAGTAGAACTCATGCTACCATCCCCACGAGCTCAAGACATTGACAAGTCATTCCATACTTTCTATCTTTTTCCTACTTATGTTTTAGTTTATTAGCAAGACATTGTATTTTTTAAAACATTTATTCCGTTCATCAATCTATACATCTTCCATGGCTATTCATTTCTTTCACTTTCCATTTGCTGTTTATCATCCATGAGTAACTAACTCTCTTAAGGGTCACGGGTTATGTTATCATCTAAATAAGAACTGTAGAAGACTATTCCATCTTGTCAATTGTACTTTTAATCTAATGCTTATGTCCATCTAGTTAATCGATATAAGTAGTAATAATCAGACTGCTCGAGAGAGTAAGTGATTGTGGAACTCAATTGATAAGGCTAAGAAGTGTTACCTAGACATAGGAATAACCTTGGCACTTAACACTCTCCATATAACGCATAGCGGCTGACAACCGAGAGAAGAGTCGCTGGTATGAAATAGACCTTGCTATGCGTTTCTGACTTTAGATGATAACCAACCCAAGCCCTGTTTTTACCATTCATATAATTCAATTAGTTGACTTTGCTGTGTCGCATACCTCTCCATCCAACCACTTTAGCTTAGTTTTACTGCTTTATAGTTTCTTAGATGCATCACTTCTCACCACCTTCTTTAACCGCATGACTCAAATAATCCAACTAATTATAGAATCTGCATAGTCCCTATGTTCGACCTCGGACTCACCGAGAAAACCTCATTCTTTGCTTATACGTGGGTGAAGAATAGGAAAACTTGACAGATTAGTAACGCATATTATTAAGAGCGTTGAACGCACAACAAGTTTAATAAAGATTCACAACATGTACCACATTGGCTTTTCCTATGAATTTTCCGAGGGGATATAGGGCACAAAAGAAGGTAAAATCTTGGATGGAAGAGTTTTAGAAGTTACCTTACATTTCTCCATATGAGAGTTATAGGCAAATCGATCCCAACAGTGATCTCATGGAGAAAAGAGTAGTTGGGGTTCTACATGAGCTTTTGAGTTTGACTCTTCACAATAAAACTTAAAGAAACTACTTGAGAAACTTGAGAGAGGAAATGAATCTCCCCCATAAGTTCATTTGAATCTTCACCCAGTATCCTGGAATATTCTATCTCTCCTTGAAGTGTAAGACTACCACTGTTTCTCTCAGGGAAGGGTATCAGCGGGGAAATCTAGTGAACCCACATCCTTTGACATGTCTAAGGGAGAAGTTCTATTATATCATGAAGACTGGACTGTTATATCATGGGAAAGGCACTACATTGTTGGCAAAGGAGGGCATTTTGCTTAATAATACAGCCGAGGTAGTGGAGGATGGTTTGGATATTGAATTAGAGGAGACAGTTGACGATGAATGTTTTGAGGACAACAACTCACAAGTAGAGGAATCTGATTCAGATTAA ATGCCATTAAGCGCTTCTCTACTGGCTTCATCACCATCAAATCCATCGCCGATTGGAAAAAGCTACTCGGCCTCACAATCCCTGTTATTCGATTCATCCGGAGGGGATCTTGGTCTGCCATGTGGTTTGAGGTCATTGATTCCTAGGTATTCAGATCATTTTCAATTAGTGAAGTATCCTGGAATATTCTATCTCTCCTTGAAGTGTAAGACTACCACTGTTTCTCTCAGGGAAGGGTATCAGCGGGGAAATCTAGTGAACCCACATCCTTTGACATGTCTAAGGGAGAAGTTCTATTATATCATGAAGACTGGACTGTTATATCATGGGAAAGGCACTACATTGTTGGCAAAGGAGGGCATTTTGCTTAATAATACAGCCGAGGTAGTGGAGGATGGTTTGGATATTGAATTAGAGGAGACAGTTGACGATGAATGTTTTGAGGACAACAACTCACAAGTAGAGGAATCTGATTCAGATTAA ATGCCATTAAGCGCTTCTCTACTGGCTTCATCACCATCAAATCCATCGCCGATTGGAAAAAGCTACTCGGCCTCACAATCCCTGTTATTCGATTCATCCGGAGGGGATCTTGGTCTGCCATGTGGTTTGAGGTCATTGATTCCTAGGTATTCAGATCATTTTCAATTAGTGAAGTATCCTGGAATATTCTATCTCTCCTTGAAGTGTAAGACTACCACTGTTTCTCTCAGGGAAGGGTATCAGCGGGGAAATCTAGTGAACCCACATCCTTTGACATGTCTAAGGGAGAAGTTCTATTATATCATGAAGACTGGACTGTTATATCATGGGAAAGGCACTACATTGTTGGCAAAGGAGGGCATTTTGCTTAATAATACAGCCGAGGTAGTGGAGGATGGTTTGGATATTGAATTAGAGGAGACAGTTGACGATGAATGTTTTGAGGACAACAACTCACAAGTAGAGGAATCTGATTCAGATTAA MPLSASLLASSPSNPSPIGKSYSASQSLLFDSSGGDLGLPCGLRSLIPRYSDHFQLVKYPGIFYLSLKCKTTTVSLREGYQRGNLVNPHPLTCLREKFYYIMKTGLLYHGKGTTLLAKEGILLNNTAEVVEDGLDIELEETVDDECFEDNNSQVEESDSD Homology
BLAST of CaUC04G068310 vs. NCBI nr
Match: XP_038883377.1 (protein WHAT'S THIS FACTOR 9, mitochondrial [Benincasa hispida]) HSP 1 Score: 176.8 bits (447), Expect = 1.5e-40 Identity = 86/103 (83.50%), Postives = 92/103 (89.32%), Query Frame = 0
BLAST of CaUC04G068310 vs. NCBI nr
Match: XP_022967805.1 (protein WHAT'S THIS FACTOR 1 homolog [Cucurbita maxima]) HSP 1 Score: 169.1 bits (427), Expect = 3.1e-38 Identity = 84/104 (80.77%), Postives = 92/104 (88.46%), Query Frame = 0
BLAST of CaUC04G068310 vs. NCBI nr
Match: XP_022928751.1 (protein WHAT'S THIS FACTOR 1 homolog [Cucurbita moschata]) HSP 1 Score: 166.8 bits (421), Expect = 1.6e-37 Identity = 83/104 (79.81%), Postives = 91/104 (87.50%), Query Frame = 0
BLAST of CaUC04G068310 vs. NCBI nr
Match: XP_023543562.1 (protein WHAT'S THIS FACTOR 1 homolog [Cucurbita pepo subsp. pepo]) HSP 1 Score: 166.8 bits (421), Expect = 1.6e-37 Identity = 83/104 (79.81%), Postives = 91/104 (87.50%), Query Frame = 0
BLAST of CaUC04G068310 vs. NCBI nr
Match: XP_023543563.1 (protein WHAT'S THIS FACTOR 1 homolog [Cucurbita pepo subsp. pepo]) HSP 1 Score: 166.8 bits (421), Expect = 1.6e-37 Identity = 83/104 (79.81%), Postives = 91/104 (87.50%), Query Frame = 0
BLAST of CaUC04G068310 vs. ExPASy Swiss-Prot
Match: Q65XL5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0571100 PE=2 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 4.0e-04 Identity = 31/105 (29.52%), Postives = 53/105 (50.48%), Query Frame = 0
BLAST of CaUC04G068310 vs. ExPASy Swiss-Prot
Match: Q9ZUZ6 (Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WTF9 PE=4 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 4.0e-04 Identity = 29/87 (33.33%), Postives = 43/87 (49.43%), Query Frame = 0
BLAST of CaUC04G068310 vs. ExPASy TrEMBL
Match: A0A6J1HVG3 (protein WHAT'S THIS FACTOR 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111467212 PE=4 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 1.5e-38 Identity = 84/104 (80.77%), Postives = 92/104 (88.46%), Query Frame = 0
BLAST of CaUC04G068310 vs. ExPASy TrEMBL
Match: A0A6J1HXS6 (protein WHAT'S THIS FACTOR 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111467211 PE=4 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 7.5e-38 Identity = 83/104 (79.81%), Postives = 91/104 (87.50%), Query Frame = 0
BLAST of CaUC04G068310 vs. ExPASy TrEMBL
Match: A0A0A0KM36 (PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G218860 PE=4 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 7.5e-38 Identity = 80/103 (77.67%), Postives = 90/103 (87.38%), Query Frame = 0
BLAST of CaUC04G068310 vs. ExPASy TrEMBL
Match: A0A6J1EL68 (protein WHAT'S THIS FACTOR 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111435566 PE=4 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 7.5e-38 Identity = 83/104 (79.81%), Postives = 91/104 (87.50%), Query Frame = 0
BLAST of CaUC04G068310 vs. ExPASy TrEMBL
Match: A0A6J1ES37 (protein WHAT'S THIS FACTOR 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111435458 PE=4 SV=1) HSP 1 Score: 165.2 bits (417), Expect = 2.2e-37 Identity = 82/104 (78.85%), Postives = 90/104 (86.54%), Query Frame = 0
BLAST of CaUC04G068310 vs. TAIR 10
Match: AT3G58520.1 (Ubiquitin carboxyl-terminal hydrolase family protein ) HSP 1 Score: 104.0 bits (258), Expect = 1.2e-22 Identity = 50/96 (52.08%), Postives = 70/96 (72.92%), Query Frame = 0
BLAST of CaUC04G068310 vs. TAIR 10
Match: AT3G58520.2 (Ubiquitin carboxyl-terminal hydrolase family protein ) HSP 1 Score: 104.0 bits (258), Expect = 1.2e-22 Identity = 50/96 (52.08%), Postives = 70/96 (72.92%), Query Frame = 0
BLAST of CaUC04G068310 vs. TAIR 10
Match: AT5G48040.1 (Ubiquitin carboxyl-terminal hydrolase family protein ) HSP 1 Score: 65.1 bits (157), Expect = 5.9e-11 Identity = 37/96 (38.54%), Postives = 50/96 (52.08%), Query Frame = 0
BLAST of CaUC04G068310 vs. TAIR 10
Match: AT2G31290.1 (Ubiquitin carboxyl-terminal hydrolase family protein ) HSP 1 Score: 52.0 bits (123), Expect = 5.2e-07 Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 0
BLAST of CaUC04G068310 vs. TAIR 10
Match: AT2G31290.2 (Ubiquitin carboxyl-terminal hydrolase family protein ) HSP 1 Score: 52.0 bits (123), Expect = 5.2e-07 Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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