CaUC03G051700 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G051700
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	30S ribosomal protein S18, chloroplastic
Location	Ciama_Chr03: 1933181 .. 1934900 (-)
RNA-Seq Expression	CaUC03G051700
Synteny	CaUC03G051700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAATCCAAGCGACTCCCTCTTAAATCCAAACGATCTTTTCGTAGGCGTTTGCCCCCGATTCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAGTCGATTTATTAGTGAACAAGGAAAAATATTATCTAGACGGGTAAATAGATTGACCTTAAAACAGCAACGCTTAATTACTATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTCTTAATAATGAGAAACAATTTGAAAGAAGCGAGTCGACCGCTAGAACTATTGGTCTTAGAACCAGGAATAAATAGGCTTACTCTTTAATTGAATTAAAATTCTAATCCAAACTCAACCGCAGATTGATGCTTTGTTCGAAAAATCCGAAAATCTAGATTTGATTGTCGTGTCGTAAGAAAAAAAGAATAGTGGAAGAAGAATAAATCGTTTTTTTATTGAACATATTTGCTCATTTTGACCACTTTATCATATTATCATATTTTATCATACTAATTTCTACTCTACCTTCTCGGAGTTCATTCTCCAGAGAACTCCATTTTAAGCATTCCGCTGGATTCTTTCCAATCTTCTTATTTTATGATCTCATTGGAAATCATATAAAGACAATTTCTATTTAATATAGCGATTTGGGCAAGTATTTTACGATTAAGAAGCAACTGCCTCTTGTACAGATTGTGTACAAATCTACTATAACTGTAGTCTACCTTATTAGATCGAATTACTGCATTTATTCGAGCGATCCACAACTGTCGAAAATTTCTTTTTTGCCTACCTCTATCCCGATAAGCTGAAGCCAAAGCTCTTATTTTCTGTTGAGTAATAGTTCGAGTAAGTCTTGAATGAGCCCCTCGAAAGCTTGATGCAAATAAACGAATTTTTGTTCTACGTCTCCGAGCTATATATCCTCGTTTAATTCTAGTCATTGAATAAATGAAACTTTGATGAATAACTAATTGATTTCCTTTCTTTCAGTTATTCCTTTCTCCTTGCCTAGTCTATTAATAACAAAACGTATTTTTCCAATGTATAAAATAAAAATTCCAATGGCTTTTGCTACTATAACCTTCCCGACCACGATTTCTTTTTTTGTTCTAGTCACCCCAAAATACGAAATTGTATTCATACTAGGTATCAAAACAAACATAGAGTAAATAAATCAAAATAGAAATGGATCAAGAAATAGTGGGTTCCTTCGTTTCTATGGTTACTTCTTAAACGGTGAGGTCCTCTCTATACACCGGAGCTCCTTCTTTTATTTCATCAATGTTATTGTTAACTTGTACAGTTCACCCTCTTTGGCTCTACCCATGAATTAGCTAGTAATCGGTCTTTCACAACGAGATCTACCTATACAGTAACGGTATTTAATTATGAAGATTAGTTGGGTAGCTGACCCTCTTAGTCCGTTCTTGGAAGAATAAGGCCATAATCCTTCTGTTAAATAGGATTTCCTCTGCTTAATGGCTAAGCATTTGTTACCAATGGGGAATTCTTTCTCATCTAAAATTGAAAATTGAGATGATTGGATTTGCACCAATAGAAACCATAAATTTGATACACAATAAAAGGATACGATAAATATTTTTGATTTATTTTTAGGTAGTGAACGGAGTTCTTCCNNNNNNNNNNTTTTTTTTTTTCATAGGAATTCCGCATATTTTCACATCTAGGATTTACATATACAACATATATCACTGTCAAGAGTGA

mRNA sequence

ATGGATAAATCCAAGCGACTCCCTCTTAAATCCAAACGATCTTTTCGTAGGCGTTTGCCCCCGATTCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAGTCGATTTATTAGTGAACAAGGAAAAATATTATCTAGACGGATTGATGCTTTGTTCGAAAAATCCGAAAATCTAGATTTGATTGTCGTGTCCGATTTGGGCAAGTATTTTACGATTAAGAAGCAACTGCCTCTTGTACAGATTGTTAATAGTTCGATTATTCCTTTCTCCTTGCCTAGTCTATTAATAACAAAACAAATGGATCAAGAAATAGTGGGTTCCTTCGTTTCTATGTTCACCCTCTTTGGCTCTACCCATGAATTAGCTAGTAATCGGTCTTTCACAACGAGATCTACCTATACAGTAACGGTAGTGAACGGAGTTCTTCCNNNNNNNNNNTTTTTTTTTTTCATAGGAATTCCGCATATTTTCACATCTAGGATTTACATATACAACATATATCACTGTCAAGAGTGA

Coding sequence (CDS)

ATGGATAAATCCAAGCGACTCCCTCTTAAATCCAAACGATCTTTTCGTAGGCGTTTGCCCCCGATTCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAGTCGATTTATTAGTGAACAAGGAAAAATATTATCTAGACGGATTGATGCTTTGTTCGAAAAATCCGAAAATCTAGATTTGATTGTCGTGTCCGATTTGGGCAAGTATTTTACGATTAAGAAGCAACTGCCTCTTGTACAGATTGTTAATAGTTCGATTATTCCTTTCTCCTTGCCTAGTCTATTAATAACAAAACAAATGGATCAAGAAATAGTGGGTTCCTTCGTTTCTATGTTCACCCTCTTTGGCTCTACCCATGAATTAGCTAGTAATCGGTCTTTCACAACGAGATCTACCTATACAGTAACGGTAGTGAACGGAGTTCTTCCNNNNNNNNNNTTTTTTTTTTTCATAGGAATTCCGCATATTTTCACATCTAGGATTTACATATACAACATATATCACTGTCAAGAGTGA

Protein sequence

MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRIDALFEKSENLDLIVVSDLGKYFTIKKQLPLVQIVNSSIIPFSLPSLLITKQMDQEIVGSFVSMFTLFGSTHELASNRSFTTRSTYTVTVVNGVLPXXXFFFFIGIPHIFTSRIYIYNIYHCQE

Homology

[Close]

BLAST of CaUC03G051700 vs. NCBI nr
Match: KAF1876846.1 (hypothetical protein Lal_00033137 [Lupinus albus])

HSP 1 Score: 119.8 bits (299), Expect = 2.4e-23
Identity = 77/143 (53.85%), Postives = 93/143 (65.03%), Query Frame = 0


Query: 1   MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRIDALFEKSEN 60
           MDKSKRL LKSKRSFRRRLPPI SGDRIDY+NMSLISRFISEQGKILSRR++ L  K + 
Sbjct: 1   MDKSKRLFLKSKRSFRRRLPPIGSGDRIDYKNMSLISRFISEQGKILSRRLNRLTLKQQR 60

Query: 61  LDLIVVSDLGKYFTIKKQLPLV----QIVNSSIIPFSLPSLLITKQMDQEIVGSFVSMFT 120
           L  I +    K   I   LP +    Q   + +   +  + L  K+          + FT
Sbjct: 61  LITIAI----KQARILSSLPFLNNEKQFEKTELTARTTTTSLKKKK----------NRFT 120

Query: 121 LFGSTHELASNRSFTTRSTYTVT 140
           LFGSTHE+++NR FTT+S YTVT
Sbjct: 121 LFGSTHEISNNRYFTTKSNYTVT 129

[Close]

BLAST of CaUC03G051700 vs. NCBI nr
Match: YP_009752012.1 (ribosomal protein S18 [Cionosicys macranthus] >QIT05253.1 ribosomal protein S18 [Cionosicys macranthus])

HSP 1 Score: 103.2 bits (256), Expect = 2.3e-18
Identity = 54/66 (81.82%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 1  MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRIDALFEKSEN 60
          MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRR++ L  K + 
Sbjct: 1  MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LDLIVV 67
          L  I +
Sbjct: 61 LITIAI 66

[Close]

BLAST of CaUC03G051700 vs. NCBI nr
Match: YP_009326011.1 (ribosomal protein S18 [Citrullus lanatus] >YP_009348053.1 ribosomal protein S18 [Citrullus mucosospermus] >YP_009420816.1 ribosomal protein S18 [Citrullus colocynthis] >YP_009431579.1 ribosomal protein S18 [Citrullus amarus] >YP_009431664.1 ribosomal protein S18 [Citrullus rehmii] >APW82483.1 ribosomal protein S18 [Citrullus lanatus subsp. vulgaris] >QZL38615.1 ribosomal protein S18 [Citrullus naudinianus] >QZL38703.1 ribosomal protein S18 [Citrullus ecirrhosus] >APD52502.1 ribosomal protein S18 [Citrullus lanatus] >APW82568.1 ribosomal protein S18 [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 103.2 bits (256), Expect = 2.3e-18
Identity = 54/66 (81.82%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 1  MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRIDALFEKSEN 60
          MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRR++ L  K + 
Sbjct: 1  MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LDLIVV 67
          L  I +
Sbjct: 61 LITIAI 66

[Close]

BLAST of CaUC03G051700 vs. NCBI nr
Match: ATG32548.1 (ribosomal protein S18 [Prunus sibirica])

HSP 1 Score: 102.4 bits (254), Expect = 3.9e-18
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 1  MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRIDALFEKSEN 60
          MDKSKR+PLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRR++ L  K + 
Sbjct: 1  MDKSKRIPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LDLIVV 67
          L  I +
Sbjct: 61 LITIAI 66

[Close]

BLAST of CaUC03G051700 vs. NCBI nr
Match: YP_009445174.1 (30S ribosomal protein S18 [Bertholletia excelsa] >ATV97856.1 30S ribosomal protein S18 [Bertholletia excelsa])

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-17
Identity = 54/66 (81.82%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 1  MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRIDALFEKSEN 60
          MDKSKRL LKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRR++ L  K + 
Sbjct: 1  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LDLIVV 67
          L  IV+
Sbjct: 61 LITIVI 66

[Close]

BLAST of CaUC03G051700 vs. ExPASy Swiss-Prot
Match: A0ZZ57 (30S ribosomal protein S18, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps18 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.7e-20
Identity = 53/66 (80.30%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 1  MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRIDALFEKSEN 60
          MDKSKRL LKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRR++ L  K + 
Sbjct: 1  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LDLIVV 67
          L  I +
Sbjct: 61 LITIAI 66

[Close]

BLAST of CaUC03G051700 vs. ExPASy Swiss-Prot
Match: Q2L928 (30S ribosomal protein S18, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps18 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.7e-20
Identity = 53/66 (80.30%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 1  MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRIDALFEKSEN 60
          MDKSKRL LKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRR++ L  K + 
Sbjct: 1  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LDLIVV 67
          L  I +
Sbjct: 61 LITIAI 66

[Close]

BLAST of CaUC03G051700 vs. ExPASy Swiss-Prot
Match: Q09WZ5 (30S ribosomal protein S18, chloroplastic OS=Morus indica OX=248361 GN=rps18 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.7e-20
Identity = 53/66 (80.30%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 1  MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRIDALFEKSEN 60
          MDKSKRL LKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRR++ L  K + 
Sbjct: 1  MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LDLIVV 67
          L  I +
Sbjct: 61 LITIAI 66

[Close]

BLAST of CaUC03G051700 vs. ExPASy Swiss-Prot
Match: B1NWH2 (30S ribosomal protein S18, chloroplastic OS=Manihot esculenta OX=3983 GN=rps18 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.4e-20
Identity = 63/111 (56.76%), Postives = 73/111 (65.77%), Query Frame = 0


Query: 1   MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRIDALFEKSEN 60
           MDKSKRL LKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRR++ L  K + 
Sbjct: 1   MDKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLSLKQQR 60

Query: 61  LDLIVVSDLGKYFTIKKQLPLVQIVNSSIIPFSLPSLLITKQMDQEIVGSF 112
           L  I +          KQ  ++          SLP L   KQ +++ VG +
Sbjct: 61  LITIAI----------KQARILS---------SLPFLNNEKQFEKKRVGRY 92

[Close]

BLAST of CaUC03G051700 vs. ExPASy Swiss-Prot
Match: Q49KX7 (30S ribosomal protein S18, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rps18 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.6e-19
Identity = 52/66 (78.79%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 1  MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRIDALFEKSEN 60
          M+KSKRL LKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRR++ L  K + 
Sbjct: 1  MEKSKRLFLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LDLIVV 67
          L  I +
Sbjct: 61 LITIAI 66

[Close]

BLAST of CaUC03G051700 vs. ExPASy TrEMBL
Match: A0A6A5MQR0 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033137 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 77/143 (53.85%), Postives = 93/143 (65.03%), Query Frame = 0


Query: 1   MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRIDALFEKSEN 60
           MDKSKRL LKSKRSFRRRLPPI SGDRIDY+NMSLISRFISEQGKILSRR++ L  K + 
Sbjct: 1   MDKSKRLFLKSKRSFRRRLPPIGSGDRIDYKNMSLISRFISEQGKILSRRLNRLTLKQQR 60

Query: 61  LDLIVVSDLGKYFTIKKQLPLV----QIVNSSIIPFSLPSLLITKQMDQEIVGSFVSMFT 120
           L  I +    K   I   LP +    Q   + +   +  + L  K+          + FT
Sbjct: 61  LITIAI----KQARILSSLPFLNNEKQFEKTELTARTTTTSLKKKK----------NRFT 120

Query: 121 LFGSTHELASNRSFTTRSTYTVT 140
           LFGSTHE+++NR FTT+S YTVT
Sbjct: 121 LFGSTHEISNNRYFTTKSNYTVT 129

[Close]

BLAST of CaUC03G051700 vs. ExPASy TrEMBL
Match: A0A1P8LEA4 (Ribosomal protein S18 OS=Citrullus mucosospermus OX=519315 GN=rps18 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-18
Identity = 54/66 (81.82%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 1  MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRIDALFEKSEN 60
          MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRR++ L  K + 
Sbjct: 1  MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LDLIVV 67
          L  I +
Sbjct: 61 LITIAI 66

[Close]

BLAST of CaUC03G051700 vs. ExPASy TrEMBL
Match: A0A1P8LDC6 (Ribosomal protein S18 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rps18 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-18
Identity = 54/66 (81.82%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 1  MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRIDALFEKSEN 60
          MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRR++ L  K + 
Sbjct: 1  MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LDLIVV 67
          L  I +
Sbjct: 61 LITIAI 66

[Close]

BLAST of CaUC03G051700 vs. ExPASy TrEMBL
Match: A0A343A8D2 (30S ribosomal protein S18, chloroplastic OS=Citrullus lanatus OX=3654 GN=rps18 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-18
Identity = 54/66 (81.82%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 1  MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRIDALFEKSEN 60
          MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRR++ L  K + 
Sbjct: 1  MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LDLIVV 67
          L  I +
Sbjct: 61 LITIAI 66

[Close]

BLAST of CaUC03G051700 vs. ExPASy TrEMBL
Match: A0A249RX99 (30S ribosomal protein S18, chloroplastic OS=Citrullus rehmii OX=260675 GN=rps18 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-18
Identity = 54/66 (81.82%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 1  MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRIDALFEKSEN 60
          MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRR++ L  K + 
Sbjct: 1  MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQR 60

Query: 61 LDLIVV 67
          L  I +
Sbjct: 61 LITIAI 66

[Close]

BLAST of CaUC03G051700 vs. TAIR 10
Match: ATCG00650.1 (ribosomal protein S18 )

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-19
Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 0


Query: 1  MDKSKRLPLKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRIDALFEKSEN 60
          M+KSKRL  KSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRR++ +  K + 
Sbjct: 1  MNKSKRLFTKSKRSFRRRLPPIQSGDRIDYRNMSLISRFISEQGKILSRRVNRVTLKQQR 60

Query: 61 LDLIVV 67
          L  I +
Sbjct: 61 LITIAI 66

The following BLAST results are available for this feature:

BLAST of CaUC03G051700 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF1876846.1	2.4e-23	53.85	hypothetical protein Lal_00033137 [Lupinus albus]	[more]
YP_009752012.1	2.3e-18	81.82	ribosomal protein S18 [Cionosicys macranthus] >QIT05253.1 ribosomal protein S18 ...	[more]
YP_009326011.1	2.3e-18	81.82	ribosomal protein S18 [Citrullus lanatus] >YP_009348053.1 ribosomal protein S18 ...	[more]
ATG32548.1	3.9e-18	80.30	ribosomal protein S18 [Prunus sibirica]	[more]
YP_009445174.1	1.5e-17	81.82	30S ribosomal protein S18 [Bertholletia excelsa] >ATV97856.1 30S ribosomal prote...	[more]

BLAST of CaUC03G051700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0ZZ57	5.7e-20	80.30	30S ribosomal protein S18, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps1...	[more]
Q2L928	5.7e-20	80.30	30S ribosomal protein S18, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps18 ...	[more]
Q09WZ5	5.7e-20	80.30	30S ribosomal protein S18, chloroplastic OS=Morus indica OX=248361 GN=rps18 PE=3...	[more]
B1NWH2	7.4e-20	56.76	30S ribosomal protein S18, chloroplastic OS=Manihot esculenta OX=3983 GN=rps18 P...	[more]
Q49KX7	1.6e-19	78.79	30S ribosomal protein S18, chloroplastic OS=Eucalyptus globulus subsp. globulus ...	[more]

BLAST of CaUC03G051700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A5MQR0	1.1e-23	53.85	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033137 PE=3 SV=1	[more]
A0A1P8LEA4	1.1e-18	81.82	Ribosomal protein S18 OS=Citrullus mucosospermus OX=519315 GN=rps18 PE=3 SV=1	[more]
A0A1P8LDC6	1.1e-18	81.82	Ribosomal protein S18 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=rps18 PE...	[more]
A0A343A8D2	1.1e-18	81.82	30S ribosomal protein S18, chloroplastic OS=Citrullus lanatus OX=3654 GN=rps18 P...	[more]
A0A249RX99	1.1e-18	81.82	30S ribosomal protein S18, chloroplastic OS=Citrullus rehmii OX=260675 GN=rps18 ...	[more]

BLAST of CaUC03G051700 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00650.1	1.3e-19	75.76	ribosomal protein S18	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036870	Ribosomal protein S18 superfamily	GENE3D	4.10.640.10	Ribosomal protein S18	coord: 21..59 e-value: 1.7E-10 score: 42.5
IPR036870	Ribosomal protein S18 superfamily	SUPERFAMILY	46911	Ribosomal protein S18	coord: 16..54
IPR001648	Ribosomal protein S18	PFAM	PF01084	Ribosomal_S18	coord: 27..54 e-value: 4.4E-8 score: 33.2
IPR001648	Ribosomal protein S18	PANTHER	PTHR13479	30S RIBOSOMAL PROTEIN S18	coord: 2..55
None	No IPR available	PANTHER	PTHR13479:SF61	30S RIBOSOMAL PROTEIN S18, CHLOROPLASTIC	coord: 2..55
IPR018275	Ribosomal protein S18, conserved site	PROSITE	PS00057	RIBOSOMAL_S18	coord: 28..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G051700.1	CaUC03G051700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome