CaUC02G043850 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G043850
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	protodermal factor 1-like
Location	Ciama_Chr02: 31517655 .. 31518559 (-)
RNA-Seq Expression	CaUC02G043850
Synteny	CaUC02G043850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGCAAACAAACTTCTGCTCTTCTTTTCACTTTGCTTGCTGGGTTGCTTTCTCAAAGCCTGCTCATCCCTGTATTCTCCACCTCCATTGCTGACCAGAAAAGCTATTACTCTCCACCAGACCCACATGCTGGAACTCCACCAACAGGTTAACACATTCACAATGAATCTCACACATTTAGTATCAGCGTAGTAGTAATAGTAGTGACTAGTAGGCTTACAACATTCTACATCTTTTGCATTGCAGGTTCACATAGCAGCCCTATCCCACCATCACATGGTTATGGAGGAACACCGCCGCATTACTCCACACCAACTCCTTCCACACCGTCAAAGCCTCCATCTGGTGGTGGTGGATACTACAACCCTCCATCTTCAGGTGGCGGTAGCCCACCAACCACCCCTGTAGATCCAGGCACTCCAAGCACTCCCAGCATTCCTAGCACACCAAGCACTCCAAGCATTCCCACTACTCCATTTACCTGCAAGTAAGTCACAGACTTATAGTAACTGTTTTCCATGGAGAAGAGATCATCATCATCTTGGTTTCTAAAAGTGTGTTTGTTTGCAGTTATTGGCTGAATCATCCAGGAATGATATGGGGAGTATTGGGATGGTGGGGAACATTGGGGAATGCTTTTGGAGCAACCAATGTCCCAGGGTTCGGAACAAATCTCAACTTGCTCCAAGCACTTGCAAACACAAGGACTGATGGGTTTGGAGCCCTTTTAAGAGAAGGCACTGCTTCCTACCTTAACTCTCTTGCTAGTAACAGATTCCCCTTCACAACCAAGCAAGTTAGGACGAGCTTTGTCTCGGCACTCAGCTCCAACAGAGCAGCAGCTGATCAGGCCAACAGCTTCAAGTTAGCCAACGAGGGCAAAATTAAACCCAGAGCTTGA

mRNA sequence

ATGAGAAGCAAACAAACTTCTGCTCTTCTTTTCACTTTGCTTGCTGGGTTGCTTTCTCAAAGCCTGCTCATCCCTGTATTCTCCACCTCCATTGCTGACCAGAAAAGCTATTACTCTCCACCAGACCCACATGCTGGAACTCCACCAACAGGTTCACATAGCAGCCCTATCCCACCATCACATGGTTATGGAGGAACACCGCCGCATTACTCCACACCAACTCCTTCCACACCGTCAAAGCCTCCATCTGGTGGTGGTGGATACTACAACCCTCCATCTTCAGGTGGCGGTAGCCCACCAACCACCCCTGTAGATCCAGGCACTCCAAGCACTCCCAGCATTCCTAGCACACCAAGCACTCCAAGCATTCCCACTACTCCATTTACCTGCAATTATTGGCTGAATCATCCAGGAATGATATGGGGAGTATTGGGATGGTGGGGAACATTGGGGAATGCTTTTGGAGCAACCAATGTCCCAGGGTTCGGAACAAATCTCAACTTGCTCCAAGCACTTGCAAACACAAGGACTGATGGGTTTGGAGCCCTTTTAAGAGAAGGCACTGCTTCCTACCTTAACTCTCTTGCTAGTAACAGATTCCCCTTCACAACCAAGCAAGTTAGGACGAGCTTTGTCTCGGCACTCAGCTCCAACAGAGCAGCAGCTGATCAGGCCAACAGCTTCAAGTTAGCCAACGAGGGCAAAATTAAACCCAGAGCTTGA

Coding sequence (CDS)

ATGAGAAGCAAACAAACTTCTGCTCTTCTTTTCACTTTGCTTGCTGGGTTGCTTTCTCAAAGCCTGCTCATCCCTGTATTCTCCACCTCCATTGCTGACCAGAAAAGCTATTACTCTCCACCAGACCCACATGCTGGAACTCCACCAACAGGTTCACATAGCAGCCCTATCCCACCATCACATGGTTATGGAGGAACACCGCCGCATTACTCCACACCAACTCCTTCCACACCGTCAAAGCCTCCATCTGGTGGTGGTGGATACTACAACCCTCCATCTTCAGGTGGCGGTAGCCCACCAACCACCCCTGTAGATCCAGGCACTCCAAGCACTCCCAGCATTCCTAGCACACCAAGCACTCCAAGCATTCCCACTACTCCATTTACCTGCAATTATTGGCTGAATCATCCAGGAATGATATGGGGAGTATTGGGATGGTGGGGAACATTGGGGAATGCTTTTGGAGCAACCAATGTCCCAGGGTTCGGAACAAATCTCAACTTGCTCCAAGCACTTGCAAACACAAGGACTGATGGGTTTGGAGCCCTTTTAAGAGAAGGCACTGCTTCCTACCTTAACTCTCTTGCTAGTAACAGATTCCCCTTCACAACCAAGCAAGTTAGGACGAGCTTTGTCTCGGCACTCAGCTCCAACAGAGCAGCAGCTGATCAGGCCAACAGCTTCAAGTTAGCCAACGAGGGCAAAATTAAACCCAGAGCTTGA

Protein sequence

MRSKQTSALLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPDPHAGTPPTGSHSSPIPPSHGYGGTPPHYSTPTPSTPSKPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSTPSIPSTPSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALANTRTDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANSFKLANEGKIKPRA

Homology

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BLAST of CaUC02G043850 vs. NCBI nr
Match: XP_038900371.1 (protodermal factor 1-like [Benincasa hispida])

HSP 1 Score: 441.0 bits (1133), Expect = 6.4e-120
Identity = 230/244 (94.26%), Postives = 237/244 (97.13%), Query Frame = 0


Query: 1   MRSKQTSALLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPP-DPHAGTPPTGSHSSPIPP 60
           MR+KQ S LLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPP DPH+GTPPTGSHSSPIPP
Sbjct: 1   MRTKQASVLLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPSDPHSGTPPTGSHSSPIPP 60

Query: 61  SHGYGGTPPHYSTPTPSTPSKPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSTPS---IPS 120
           SHGYGG+PPHYSTPTPSTPSKPPS GGGYYNPPSSGGGSPPTTPVDPGTPSTPS   +PS
Sbjct: 61  SHGYGGSPPHYSTPTPSTPSKPPSSGGGYYNPPSSGGGSPPTTPVDPGTPSTPSTPGVPS 120

Query: 121 TPSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALANTR 180
           TPSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQAL+NTR
Sbjct: 121 TPSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTR 180

Query: 181 TDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANSFKLANEGKI 240
           TDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSN+AAADQAN+FKLANEGKI
Sbjct: 181 TDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNKAAADQANTFKLANEGKI 240

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BLAST of CaUC02G043850 vs. NCBI nr
Match: XP_004143175.1 (protodermal factor 1 [Cucumis sativus] >KGN47037.1 hypothetical protein Csa_020699 [Cucumis sativus])

HSP 1 Score: 408.7 bits (1049), Expect = 3.5e-110
Identity = 214/243 (88.07%), Postives = 230/243 (94.65%), Query Frame = 0


Query: 1   MRSKQTSALLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPDPHAGTPPTGSHSSPIPPS 60
           MRSKQ SAL+FTLLAGLLSQSLLIPV STSIADQKSYYSPPDPH+G+PP+GSHSSP+PPS
Sbjct: 1   MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPPDPHSGSPPSGSHSSPMPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPSGGGGYYNPPSSGGGSPPTTPVDPG---TPSTPSIPST 120
           HG GGT PHYSTPTPSTPS PPSGGGGYYNPPSS GGSPP+TPVDPG   TPSTPS+PST
Sbjct: 61  HGSGGT-PHYSTPTPSTPSNPPSGGGGYYNPPSS-GGSPPSTPVDPGTPSTPSTPSVPST 120

Query: 121 PSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALANTRT 180
           P+TP+IPT PFTC YWLNHPG+IWGVLGWWGTLGNAFGATNVPGFGTNLNLLQAL+NTR 
Sbjct: 121 PTTPTIPTIPFTCTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRN 180

Query: 181 DGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANSFKLANEGKIK 240
           DG+GALLREGTASYLNSLASNRFP+TTKQVRTSFVSALSSN+AA +QAN+FKLANEGKIK
Sbjct: 181 DGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGNQANTFKLANEGKIK 240

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BLAST of CaUC02G043850 vs. NCBI nr
Match: XP_022947015.1 (protodermal factor 1-like [Cucurbita moschata])

HSP 1 Score: 406.0 bits (1042), Expect = 2.3e-109
Identity = 215/249 (86.35%), Postives = 224/249 (89.96%), Query Frame = 0


Query: 1   MRSKQTSALLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPDPHAGTPPTGSHSSPIPPS 60
           MR+KQ S LLFTLLAGLLSQSLLIPV ST+IADQKSYYSPPDPHAGTPPTGSHS+PIPPS
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSTPSIPSTPST 120
           HGYGGTPPHYSTPTPSTP+K PSGG GYYNPPS  GGS PTTPVDPGTPSTPS PSTPST
Sbjct: 61  HGYGGTPPHYSTPTPSTPTKSPSGGSGYYNPPS--GGSTPTTPVDPGTPSTPSTPSTPST 120

Query: 121 PS------------IPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNL 180
           PS             PTTPFTCN+WLNHPGMIWGVLGWWGTLGN FGATNVPGFGTNLNL
Sbjct: 121 PSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLNL 180

Query: 181 LQALANTRTDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANSF 238
           LQAL+NTR DGFGALLREGTASYLNSLASNRFPFTTKQV++SFVSAL+SNRAAADQAN F
Sbjct: 181 LQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANIF 240

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BLAST of CaUC02G043850 vs. NCBI nr
Match: XP_022970795.1 (protodermal factor 1-like [Cucurbita maxima])

HSP 1 Score: 404.4 bits (1038), Expect = 6.6e-109
Identity = 216/252 (85.71%), Postives = 224/252 (88.89%), Query Frame = 0


Query: 1   MRSKQTSALLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPDPHAGTPPTGSHSSPIPPS 60
           MR+KQ S LLFTLLAGLLSQSLLIPV ST+IADQKSYYSPPDPHAGTPPTGSHS+PIPPS
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSTPSIPSTPST 120
           HGYGGTPPHYSTPTPSTPSK PSG  GYYNPPSS GGS PTTPVDPGTPSTPS PSTPST
Sbjct: 61  HGYGGTPPHYSTPTPSTPSKSPSGRSGYYNPPSS-GGSTPTTPVDPGTPSTPSTPSTPST 120

Query: 121 PS---------------IPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTN 180
           PS                PTTPFTCN+WLNHPGMIWGVLGWWGTLGN FGATNVPGFGTN
Sbjct: 121 PSTPSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTN 180

Query: 181 LNLLQALANTRTDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQA 238
           LNLLQAL+NTR DGFGALLREGTASYLNSLASNRFPFTTKQV++SFVSAL+SNRAAADQA
Sbjct: 181 LNLLQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQA 240

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BLAST of CaUC02G043850 vs. NCBI nr
Match: XP_008456355.1 (PREDICTED: protodermal factor 1-like [Cucumis melo] >KAA0054578.1 protodermal factor 1-like [Cucumis melo var. makuwa] >TYK27542.1 protodermal factor 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 404.4 bits (1038), Expect = 6.6e-109
Identity = 215/243 (88.48%), Postives = 227/243 (93.42%), Query Frame = 0


Query: 1   MRSKQTSALLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPDPHAGTPPTGSHSSPIPPS 60
           MRSKQ SALLFTLLAGLLSQSLLIPV STSI DQKSYYSPPDPH+G+PP+GSH SPIPPS
Sbjct: 1   MRSKQASALLFTLLAGLLSQSLLIPVLSTSITDQKSYYSPPDPHSGSPPSGSHGSPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPSGGGGYYNPPSSGGGSPPTTPVDPG---TPSTPSIPST 120
           HG GGT PHYSTPTPST    PSGGGGYYNPPSS GGSPP+TPVDPG   TPSTPS+PST
Sbjct: 61  HGNGGT-PHYSTPTPST----PSGGGGYYNPPSS-GGSPPSTPVDPGTPSTPSTPSVPST 120

Query: 121 PSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALANTRT 180
           PSTP+IPTTPFTCNYWLNHPG+IWGVLGWWGTLGNAFGATNVPGFGTNLNLLQAL+NTR 
Sbjct: 121 PSTPTIPTTPFTCNYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRN 180

Query: 181 DGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANSFKLANEGKIK 240
           DG+GALLREGTASYLNSLASNRFP+TTKQVRTSFVSALSSN+AA DQAN+FKLANEGKIK
Sbjct: 181 DGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGDQANTFKLANEGKIK 237

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BLAST of CaUC02G043850 vs. ExPASy Swiss-Prot
Match: Q9S728 (Protodermal factor 1 OS=Arabidopsis thaliana OX=3702 GN=PDF1 PE=2 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.0e-47
Identity = 135/307 (43.97%), Postives = 167/307 (54.40%), Query Frame = 0


Query: 7   SALLFTLLAGLLSQSLLIPVFSTSIADQKSYY-SPPDPHAGTPPT--------------- 66
           S  ++ L A LLSQ L   V S    D K+YY SPP    GTPP+               
Sbjct: 6   SFAVWALFAALLSQQLFASVASVRFEDAKTYYLSPPSGSHGTPPSHTPPSSNCGSPPYDP 65

Query: 67  --GSHSSPIPPSH---------------------------------GYGGTPPHYSTPTP 126
              + S P PPSH                                  +  TP H STP+ 
Sbjct: 66  SPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPSH 125

Query: 127 STPSKPPSGGGGYYN-----------PPSS--------GGGSPPTTPVDPGTPSTPSIPS 186
            TPS PPS  GGYY+           PPS          GGSPPT  +DPGTP TP IP+
Sbjct: 126 PTPSHPPS--GGYYSSPPPRTPVVVTPPSPIVDPGTPIIGGSPPTPIIDPGTPGTPFIPA 185

Query: 187 TPSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGA----TNVPGFGTNLNLLQAL 240
                  P    TC+YW NHP +IWG+LGWWGT+G AFG     +++PGF  ++NLLQAL
Sbjct: 186 -----PFPPITGTCDYWRNHPTLIWGLLGWWGTVGGAFGTVSIPSSIPGFDPHMNLLQAL 245

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BLAST of CaUC02G043850 vs. ExPASy TrEMBL
Match: A0A0A0KF76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G178950 PE=4 SV=1)

HSP 1 Score: 408.7 bits (1049), Expect = 1.7e-110
Identity = 214/243 (88.07%), Postives = 230/243 (94.65%), Query Frame = 0


Query: 1   MRSKQTSALLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPDPHAGTPPTGSHSSPIPPS 60
           MRSKQ SAL+FTLLAGLLSQSLLIPV STSIADQKSYYSPPDPH+G+PP+GSHSSP+PPS
Sbjct: 1   MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPPDPHSGSPPSGSHSSPMPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPSGGGGYYNPPSSGGGSPPTTPVDPG---TPSTPSIPST 120
           HG GGT PHYSTPTPSTPS PPSGGGGYYNPPSS GGSPP+TPVDPG   TPSTPS+PST
Sbjct: 61  HGSGGT-PHYSTPTPSTPSNPPSGGGGYYNPPSS-GGSPPSTPVDPGTPSTPSTPSVPST 120

Query: 121 PSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALANTRT 180
           P+TP+IPT PFTC YWLNHPG+IWGVLGWWGTLGNAFGATNVPGFGTNLNLLQAL+NTR 
Sbjct: 121 PTTPTIPTIPFTCTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRN 180

Query: 181 DGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANSFKLANEGKIK 240
           DG+GALLREGTASYLNSLASNRFP+TTKQVRTSFVSALSSN+AA +QAN+FKLANEGKIK
Sbjct: 181 DGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGNQANTFKLANEGKIK 240

[Close]

BLAST of CaUC02G043850 vs. ExPASy TrEMBL
Match: A0A6J1G5M6 (protodermal factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451018 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 1.1e-109
Identity = 215/249 (86.35%), Postives = 224/249 (89.96%), Query Frame = 0


Query: 1   MRSKQTSALLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPDPHAGTPPTGSHSSPIPPS 60
           MR+KQ S LLFTLLAGLLSQSLLIPV ST+IADQKSYYSPPDPHAGTPPTGSHS+PIPPS
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSTPSIPSTPST 120
           HGYGGTPPHYSTPTPSTP+K PSGG GYYNPPS  GGS PTTPVDPGTPSTPS PSTPST
Sbjct: 61  HGYGGTPPHYSTPTPSTPTKSPSGGSGYYNPPS--GGSTPTTPVDPGTPSTPSTPSTPST 120

Query: 121 PS------------IPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNL 180
           PS             PTTPFTCN+WLNHPGMIWGVLGWWGTLGN FGATNVPGFGTNLNL
Sbjct: 121 PSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLNL 180

Query: 181 LQALANTRTDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANSF 238
           LQAL+NTR DGFGALLREGTASYLNSLASNRFPFTTKQV++SFVSAL+SNRAAADQAN F
Sbjct: 181 LQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANIF 240

[Close]

BLAST of CaUC02G043850 vs. ExPASy TrEMBL
Match: A0A5A7UHX0 (Protodermal factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00090 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 3.2e-109
Identity = 215/243 (88.48%), Postives = 227/243 (93.42%), Query Frame = 0


Query: 1   MRSKQTSALLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPDPHAGTPPTGSHSSPIPPS 60
           MRSKQ SALLFTLLAGLLSQSLLIPV STSI DQKSYYSPPDPH+G+PP+GSH SPIPPS
Sbjct: 1   MRSKQASALLFTLLAGLLSQSLLIPVLSTSITDQKSYYSPPDPHSGSPPSGSHGSPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPSGGGGYYNPPSSGGGSPPTTPVDPG---TPSTPSIPST 120
           HG GGT PHYSTPTPST    PSGGGGYYNPPSS GGSPP+TPVDPG   TPSTPS+PST
Sbjct: 61  HGNGGT-PHYSTPTPST----PSGGGGYYNPPSS-GGSPPSTPVDPGTPSTPSTPSVPST 120

Query: 121 PSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALANTRT 180
           PSTP+IPTTPFTCNYWLNHPG+IWGVLGWWGTLGNAFGATNVPGFGTNLNLLQAL+NTR 
Sbjct: 121 PSTPTIPTTPFTCNYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRN 180

Query: 181 DGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANSFKLANEGKIK 240
           DG+GALLREGTASYLNSLASNRFP+TTKQVRTSFVSALSSN+AA DQAN+FKLANEGKIK
Sbjct: 181 DGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGDQANTFKLANEGKIK 237

[Close]

BLAST of CaUC02G043850 vs. ExPASy TrEMBL
Match: A0A6J1I3W1 (protodermal factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111469672 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 3.2e-109
Identity = 216/252 (85.71%), Postives = 224/252 (88.89%), Query Frame = 0


Query: 1   MRSKQTSALLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPDPHAGTPPTGSHSSPIPPS 60
           MR+KQ S LLFTLLAGLLSQSLLIPV ST+IADQKSYYSPPDPHAGTPPTGSHS+PIPPS
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSTPSIPSTPST 120
           HGYGGTPPHYSTPTPSTPSK PSG  GYYNPPSS GGS PTTPVDPGTPSTPS PSTPST
Sbjct: 61  HGYGGTPPHYSTPTPSTPSKSPSGRSGYYNPPSS-GGSTPTTPVDPGTPSTPSTPSTPST 120

Query: 121 PS---------------IPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTN 180
           PS                PTTPFTCN+WLNHPGMIWGVLGWWGTLGN FGATNVPGFGTN
Sbjct: 121 PSTPSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTN 180

Query: 181 LNLLQALANTRTDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQA 238
           LNLLQAL+NTR DGFGALLREGTASYLNSLASNRFPFTTKQV++SFVSAL+SNRAAADQA
Sbjct: 181 LNLLQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQA 240

[Close]

BLAST of CaUC02G043850 vs. ExPASy TrEMBL
Match: A0A1S3C4A9 (protodermal factor 1-like OS=Cucumis melo OX=3656 GN=LOC103496321 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 3.2e-109
Identity = 215/243 (88.48%), Postives = 227/243 (93.42%), Query Frame = 0


Query: 1   MRSKQTSALLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPDPHAGTPPTGSHSSPIPPS 60
           MRSKQ SALLFTLLAGLLSQSLLIPV STSI DQKSYYSPPDPH+G+PP+GSH SPIPPS
Sbjct: 1   MRSKQASALLFTLLAGLLSQSLLIPVLSTSITDQKSYYSPPDPHSGSPPSGSHGSPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPSGGGGYYNPPSSGGGSPPTTPVDPG---TPSTPSIPST 120
           HG GGT PHYSTPTPST    PSGGGGYYNPPSS GGSPP+TPVDPG   TPSTPS+PST
Sbjct: 61  HGNGGT-PHYSTPTPST----PSGGGGYYNPPSS-GGSPPSTPVDPGTPSTPSTPSVPST 120

Query: 121 PSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALANTRT 180
           PSTP+IPTTPFTCNYWLNHPG+IWGVLGWWGTLGNAFGATNVPGFGTNLNLLQAL+NTR 
Sbjct: 121 PSTPTIPTTPFTCNYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRN 180

Query: 181 DGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANSFKLANEGKIK 240
           DG+GALLREGTASYLNSLASNRFP+TTKQVRTSFVSALSSN+AA DQAN+FKLANEGKIK
Sbjct: 181 DGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGDQANTFKLANEGKIK 237

[Close]

BLAST of CaUC02G043850 vs. TAIR 10
Match: AT2G42840.1 (protodermal factor 1 )

HSP 1 Score: 190.7 bits (483), Expect = 1.4e-48
Identity = 135/307 (43.97%), Postives = 167/307 (54.40%), Query Frame = 0


Query: 7   SALLFTLLAGLLSQSLLIPVFSTSIADQKSYY-SPPDPHAGTPPT--------------- 66
           S  ++ L A LLSQ L   V S    D K+YY SPP    GTPP+               
Sbjct: 6   SFAVWALFAALLSQQLFASVASVRFEDAKTYYLSPPSGSHGTPPSHTPPSSNCGSPPYDP 65

Query: 67  --GSHSSPIPPSH---------------------------------GYGGTPPHYSTPTP 126
              + S P PPSH                                  +  TP H STP+ 
Sbjct: 66  SPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPSH 125

Query: 127 STPSKPPSGGGGYYN-----------PPSS--------GGGSPPTTPVDPGTPSTPSIPS 186
            TPS PPS  GGYY+           PPS          GGSPPT  +DPGTP TP IP+
Sbjct: 126 PTPSHPPS--GGYYSSPPPRTPVVVTPPSPIVDPGTPIIGGSPPTPIIDPGTPGTPFIPA 185

Query: 187 TPSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGA----TNVPGFGTNLNLLQAL 240
                  P    TC+YW NHP +IWG+LGWWGT+G AFG     +++PGF  ++NLLQAL
Sbjct: 186 -----PFPPITGTCDYWRNHPTLIWGLLGWWGTVGGAFGTVSIPSSIPGFDPHMNLLQAL 245

The following BLAST results are available for this feature:

BLAST of CaUC02G043850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900371.1	6.4e-120	94.26	protodermal factor 1-like [Benincasa hispida]	[more]
XP_004143175.1	3.5e-110	88.07	protodermal factor 1 [Cucumis sativus] >KGN47037.1 hypothetical protein Csa_0206...	[more]
XP_022947015.1	2.3e-109	86.35	protodermal factor 1-like [Cucurbita moschata]	[more]
XP_022970795.1	6.6e-109	85.71	protodermal factor 1-like [Cucurbita maxima]	[more]
XP_008456355.1	6.6e-109	88.48	PREDICTED: protodermal factor 1-like [Cucumis melo] >KAA0054578.1 protodermal fa...	[more]

BLAST of CaUC02G043850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S728	2.0e-47	43.97	Protodermal factor 1 OS=Arabidopsis thaliana OX=3702 GN=PDF1 PE=2 SV=1	[more]

BLAST of CaUC02G043850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KF76	1.7e-110	88.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G178950 PE=4 SV=1	[more]
A0A6J1G5M6	1.1e-109	86.35	protodermal factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451018 PE=4 SV=...	[more]
A0A5A7UHX0	3.2e-109	88.48	Protodermal factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1I3W1	3.2e-109	85.71	protodermal factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111469672 PE=4 SV=1	[more]
A0A1S3C4A9	3.2e-109	88.48	protodermal factor 1-like OS=Cucumis melo OX=3656 GN=LOC103496321 PE=4 SV=1	[more]

BLAST of CaUC02G043850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42840.1	1.4e-48	43.97	protodermal factor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..122
None	No IPR available	PANTHER	PTHR33210:SF18	PROTODERMAL FACTOR 1	coord: 1..240
IPR039923	Protodermal factor 1	PANTHER	PTHR33210	PROTODERMAL FACTOR 1	coord: 1..240

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC02G043850.1	CaUC02G043850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane