CaUC02G033810 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G033810
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionTy3-gypsy retrotransposon protein
LocationCiama_Chr02: 10097552 .. 10099364 (+)
RNA-Seq ExpressionCaUC02G033810
SyntenyCaUC02G033810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCCATGAATATATATATCTTATTCAATTGTTCTTGTTATTCAATATCATTTTCATATGAGAAGCATTTGTGATTTGCATATAAAGTAATGCCTTCGTGGTAAGGTTTACAGGTTTTATGAGAACACTTACATTTGTTGTGTAGATTGTTTGAACTATGACAAATCAAATGATAAATATTGCACCTCGCTATGAAATTTCCTGATTTTTTTTTTTCTAATTTCCTGATTCTTTTAGCCCCATGCTTTTTATATATATATATATATATATATATATATATATATATATATATATATTTAACGAGAACATAACTTCATTAGATAGAAATATTACCCAAAGGGCTATAACCAAGGATCTCCCTGGTAATGAAGGGAGAAAGCCAATTTGGAGACACAACATTCCATAACCTCCTCCTCCAACATTTCGCAGTCCACCCAGCTAATGCATGGGCAACTGCATTTTCTGAATGAAAAATAAAATTGAACTCCTCAATATGAGTCTTGATCATCCAATCACGCATCTCTCCCAAAATGACTCCTTGAAGAGACTCGATCAGTTCATTTTAATCATGGCTTAATAAGAGTTTGAGGTTTAGATTCCACTCAAAAATTTGTTAAGCCTCGTTCATTAGCCGCTTTTAACACAACAAGTAGAGCCATGGACTCGGAAAATAACAAATCCGGCCCCATCAAGCACTTCAAAAACGCCAACACCATTCTGCCCTCATAGTCCCCAACAATTCCTCCCAGCTCTCGTTCTTTTCCTTTCCACGCAACATGGAACATCCACATTTGATTTTAGAACATAACTTCAGGTGACCGCCAACACATCTCAGGGAACTCTTTCAATTCCCCCATCTCTCGCGAGCCCCTCCACATTTGAAGAAAGCTGCAAACTGTCCACCCTCCCCTTTAGCTGCACCTCACCATATTCCCTCACATACTTCTAGATCCATTAGGCTTTCAATCCCATTGGAGTGACTTGTAAGTTCTTGGAAGCTTTGTTCTGTCCCATTGGAGTGACTTGTAAGGTCGTAGTGATTAGTTTTGAGGAAGCGACACTTGATTGGTTTGGATGCAAGGAGGAGGGGGAGCCTTTCAAAGATTGGAAGGAGTTAAAGGAGCGGCTATTAGTTCGTTTCCACTCATCGAGGAAAGGATCAATGTGTGCAATTTTTGGCGATCAAACAAGAAACGACTGTGGAGGAATATTGAAATTTATTCGATAAGCTAGTGGCGCCTCTTCCCTAACTTTCCCATCAAGTGTTGGAAGAAACCTTCATGAATGGGCTGACTCCATGGATTAAAGCCGAAGTTGAATGTTGGGAACCCGTCGGGCTGGCTGGCATGATGAAGATAGCCCAATTAGTCGAAAATCAGGAGTTGACAAGAAGTGAAGCGGGCCTGGGGGTAATTCCATAATTAAGGCCCAAACTCACATCTCTATTGTTAAGAACATGTTGTCGGGCTTGGCGAAGGAGGTACAGAAGACCCAGAATATGCCGACTACAAGGACGATCACCTTACACGGCGTAGCGACGGGAGGAAATCGAAGATAAGGATCGGCAAAACGATTGACGGACGGTGGTGAGGTTGACAAATCCAGGGACGATGAAACTCCGAGGGGTCATCGGTGTGATGAAAAATATTTTGTGGTTCATCGGTGTAAGGTATGTGATGAGGAGTGGGACGTTTTAAAGGATGAAGACATGGGGGCGATTGAACTCAAACAAATAGAAGTCGAGCCGGTAGTGGAGTTGTGTTTGAACTCGGTGGTGGTGTTGACAAATCCAGGAACGATGAAACTCTGA

mRNA sequence

ATGAAAACCTTCATGAATGGGCTGACTCCATGGATTAAAGCCGAAGTTGAATGTTGGGAACCCGTCGGGCTGGCTGGCATGATGAAGATAGCCCAATTAGTCGAAAATCAGGAGTTGACAAGAAGTGAAGCGGGCCTGGGGGTATGTGATGAGGAGTGGGACGTTTTAAAGGATGAAGACATGGGGGCGATTGAACTCAAACAAATAGAAGTCGAGCCGGTAGTGGAGTTGTGTTTGAACTCGGTGGTGGTGTTGACAAATCCAGGAACGATGAAACTCTGA

Coding sequence (CDS)

ATGAAAACCTTCATGAATGGGCTGACTCCATGGATTAAAGCCGAAGTTGAATGTTGGGAACCCGTCGGGCTGGCTGGCATGATGAAGATAGCCCAATTAGTCGAAAATCAGGAGTTGACAAGAAGTGAAGCGGGCCTGGGGGTATGTGATGAGGAGTGGGACGTTTTAAAGGATGAAGACATGGGGGCGATTGAACTCAAACAAATAGAAGTCGAGCCGGTAGTGGAGTTGTGTTTGAACTCGGTGGTGGTGTTGACAAATCCAGGAACGATGAAACTCTGA

Protein sequence

MKTFMNGLTPWIKAEVECWEPVGLAGMMKIAQLVENQELTRSEAGLGVCDEEWDVLKDEDMGAIELKQIEVEPVVELCLNSVVVLTNPGTMKL
Homology
[Close]
BLAST of CaUC02G033810 vs. NCBI nr
Match: KAA0054240.1 (disease resistance protein [Cucumis melo var. makuwa] >TYK15030.1 peroxidase 64 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 57/150 (38.00%), Postives = 74/150 (49.33%), Query Frame = 0 

Query: 5   MNGLTPWIKAEVECWEPVGLAGMMKIAQLVENQELTRSEAGL------------------ 64
           MNGL+PWIK EVECWEPVGLA MMK+AQ +EN+EL R EAGL                  
Sbjct: 1   MNGLSPWIKIEVECWEPVGLAQMMKLAQHLENKELMRREAGLKKNIEGETRRGGPTKRLS 60

Query: 65  ----------GVC----------------------------DEEWDVLKDED-MGAIELK 94
                     G+C                            +EE ++ +++D     ++K
Sbjct: 61  DAEFQARKEKGLCFCCERYHTGHCCKVKEQREFRVLVVRENEEEVEIFEEDDHEEETKMK 120

[Close]
BLAST of CaUC02G033810 vs. NCBI nr
Match: KAA0039351.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK00534.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 6.5e-12
Identity = 54/145 (37.24%), Postives = 72/145 (49.66%), Query Frame = 0 

Query: 4   FMNGLTPWIKAEVECWEPVGLAGMMKIAQLVENQELTRSEAGL----------------- 63
           FMNGL+PWIK EVECWEP+GLA MMK+AQ VEN+++ + EAG                  
Sbjct: 98  FMNGLSPWIKIEVECWEPIGLAQMMKLAQRVENRKVMQKEAGFEDCEGLTRRMSDAEFQA 157

Query: 64  ----GVC-----------------------------DEEWDVLKDEDMG-AIELKQIEVE 94
               G+C                             DEE +V+++ D G   ELK +EVE
Sbjct: 158 QRDKGLCLNCGERYFACHHCKIKEQRELRILVVWENDEEVEVIEENDQGEEKELKILEVE 217

[Close]
BLAST of CaUC02G033810 vs. NCBI nr
Match: KAA0041314.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 2.5e-11
Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 0 

Query: 3   TFMNGLTPWIKAEVECWEPVGLAGMMKIAQLVENQELTRSEAGLGVCD------------ 62
           TFMNGL PWI+AEV    P  LA MM++AQLVEN+E+ R EA L  C+            
Sbjct: 86  TFMNGLVPWIRAEVAFCRPKSLAKMMEVAQLVENREILRREANLNRCNEKYSADHKCKME 145

Query: 63  -------------EEWDVLKDEDMGAIELKQIEVE----PVVELCLNSVVVLTNPGTMKL 94
                        EE+++++ +++   EL ++EV+      VEL +NSVV L +PGTMK+
Sbjct: 146 HRELRMFIVANDKEEFEIVEGKEVEKGELNKLEVKGDTTTFVELSINSVVSLNDPGTMKV 205

[Close]
BLAST of CaUC02G033810 vs. NCBI nr
Match: KAA0033137.1 (polyprotein [Cucumis melo var. makuwa] >TYK17096.1 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 3.2e-11
Identity = 48/97 (49.48%), Postives = 64/97 (65.98%), Query Frame = 0 

Query: 2   KTFMNGLTPWIKAEVECWEPVGLAGMMKIAQLVENQELTRSEAGLGVCDEEWDVLKDEDM 61
           +TFMNGL PW+K EVE  EP GLA MMK+A  +EN+E            EE +++++E  
Sbjct: 114 ETFMNGLNPWLKFEVETLEPNGLAQMMKLALKIENRE----------GGEELEIVEEEFF 173

Query: 62  GA-IELKQIEVEPV----VELCLNSVVVLTNPGTMKL 94
            A IE+KQ EV+ V    +EL +NSVV L+NPGTMK+
Sbjct: 174 DAEIEIKQAEVQNVENLNIELFINSVVGLSNPGTMKV 200

[Close]
BLAST of CaUC02G033810 vs. NCBI nr
Match: TYK02775.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-10
Identity = 47/120 (39.17%), Postives = 67/120 (55.83%), Query Frame = 0 

Query: 3   TFMNGLTPWIKAEVECWEPVGLAGMMKIAQLVENQELTRSEAGLGVCD------------ 62
           TFMNGL PWI+AEV    P  LA MM++AQLVEN+E+ R EA L  C+            
Sbjct: 194 TFMNGLVPWIRAEVAFCRPKSLAKMMEVAQLVENREILRREANLNRCNEKYLADHKCKME 253

Query: 63  -------------EEWDVLKDEDMGAIELKQIEVE----PVVELCLNSVVVLTNPGTMKL 94
                        EE+++++ +++   EL ++EV+      VEL +NSVV L +P TMK+
Sbjct: 254 HRELRMFIVANDKEEFEIVEGKEVEKGELNKLEVKGDTTTFVELSINSVVSLNDPSTMKV 313

[Close]
BLAST of CaUC02G033810 vs. ExPASy TrEMBL
Match: A0A5A7UG48 (Disease resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00710 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.3e-13
Identity = 57/150 (38.00%), Postives = 74/150 (49.33%), Query Frame = 0 

Query: 5   MNGLTPWIKAEVECWEPVGLAGMMKIAQLVENQELTRSEAGL------------------ 64
           MNGL+PWIK EVECWEPVGLA MMK+AQ +EN+EL R EAGL                  
Sbjct: 1   MNGLSPWIKIEVECWEPVGLAQMMKLAQHLENKELMRREAGLKKNIEGETRRGGPTKRLS 60

Query: 65  ----------GVC----------------------------DEEWDVLKDED-MGAIELK 94
                     G+C                            +EE ++ +++D     ++K
Sbjct: 61  DAEFQARKEKGLCFCCERYHTGHCCKVKEQREFRVLVVRENEEEVEIFEEDDHEEETKMK 120

[Close]
BLAST of CaUC02G033810 vs. ExPASy TrEMBL
Match: A0A5A7TCJ3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001440 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.2e-12
Identity = 54/145 (37.24%), Postives = 72/145 (49.66%), Query Frame = 0 

Query: 4   FMNGLTPWIKAEVECWEPVGLAGMMKIAQLVENQELTRSEAGL----------------- 63
           FMNGL+PWIK EVECWEP+GLA MMK+AQ VEN+++ + EAG                  
Sbjct: 98  FMNGLSPWIKIEVECWEPIGLAQMMKLAQRVENRKVMQKEAGFEDCEGLTRRMSDAEFQA 157

Query: 64  ----GVC-----------------------------DEEWDVLKDEDMG-AIELKQIEVE 94
               G+C                             DEE +V+++ D G   ELK +EVE
Sbjct: 158 QRDKGLCLNCGERYFACHHCKIKEQRELRILVVWENDEEVEVIEENDQGEEKELKILEVE 217

[Close]
BLAST of CaUC02G033810 vs. ExPASy TrEMBL
Match: A0A5A7TCX9 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G003140 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 0 

Query: 3   TFMNGLTPWIKAEVECWEPVGLAGMMKIAQLVENQELTRSEAGLGVCD------------ 62
           TFMNGL PWI+AEV    P  LA MM++AQLVEN+E+ R EA L  C+            
Sbjct: 86  TFMNGLVPWIRAEVAFCRPKSLAKMMEVAQLVENREILRREANLNRCNEKYSADHKCKME 145

Query: 63  -------------EEWDVLKDEDMGAIELKQIEVE----PVVELCLNSVVVLTNPGTMKL 94
                        EE+++++ +++   EL ++EV+      VEL +NSVV L +PGTMK+
Sbjct: 146 HRELRMFIVANDKEEFEIVEGKEVEKGELNKLEVKGDTTTFVELSINSVVSLNDPGTMKV 205

[Close]
BLAST of CaUC02G033810 vs. ExPASy TrEMBL
Match: A0A5A7SUY2 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00290 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.6e-11
Identity = 48/97 (49.48%), Postives = 64/97 (65.98%), Query Frame = 0 

Query: 2   KTFMNGLTPWIKAEVECWEPVGLAGMMKIAQLVENQELTRSEAGLGVCDEEWDVLKDEDM 61
           +TFMNGL PW+K EVE  EP GLA MMK+A  +EN+E            EE +++++E  
Sbjct: 114 ETFMNGLNPWLKFEVETLEPNGLAQMMKLALKIENRE----------GGEELEIVEEEFF 173

Query: 62  GA-IELKQIEVEPV----VELCLNSVVVLTNPGTMKL 94
            A IE+KQ EV+ V    +EL +NSVV L+NPGTMK+
Sbjct: 174 DAEIEIKQAEVQNVENLNIELFINSVVGLSNPGTMKV 200

[Close]
BLAST of CaUC02G033810 vs. ExPASy TrEMBL
Match: A0A5D3BUJ8 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00340 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.9e-11
Identity = 47/120 (39.17%), Postives = 67/120 (55.83%), Query Frame = 0 

Query: 3   TFMNGLTPWIKAEVECWEPVGLAGMMKIAQLVENQELTRSEAGLGVCD------------ 62
           TFMNGL PWI+AEV    P  LA MM++AQLVEN+E+ R EA L  C+            
Sbjct: 194 TFMNGLVPWIRAEVAFCRPKSLAKMMEVAQLVENREILRREANLNRCNEKYLADHKCKME 253

Query: 63  -------------EEWDVLKDEDMGAIELKQIEVE----PVVELCLNSVVVLTNPGTMKL 94
                        EE+++++ +++   EL ++EV+      VEL +NSVV L +P TMK+
Sbjct: 254 HRELRMFIVANDKEEFEIVEGKEVEKGELNKLEVKGDTTTFVELSINSVVSLNDPSTMKV 313

The following BLAST results are available for this feature:
BLAST of CaUC02G033810 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0054240.11.3e-1238.00disease resistance protein [Cucumis melo var. makuwa] >TYK15030.1 peroxidase 64 ... [more]
KAA0039351.16.5e-1237.24ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK00534.1 ty3-gyp... [more]
KAA0041314.12.5e-1140.00putative retroelement pol polyprotein [Cucumis melo var. makuwa][more]
KAA0033137.13.2e-1149.48polyprotein [Cucumis melo var. makuwa] >TYK17096.1 polyprotein [Cucumis melo var... [more]
TYK02775.11.2e-1039.17Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
BLAST of CaUC02G033810 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC02G033810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UG486.3e-1338.00Disease resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A5A7TCJ33.2e-1237.24Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7TCX91.2e-1140.00Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7SUY21.6e-1149.48Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00290 P... [more]
A0A5D3BUJ85.9e-1139.17Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
BLAST of CaUC02G033810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G033810.1CaUC02G033810.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0035246 peptidyl-arginine N-methylation
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016274 protein-arginine N-methyltransferase activity