Sed0000041 (gene) Chayote v1

Overview
NameSed0000041
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG05: 28589468 .. 28589659 (-)
RNA-Seq ExpressionSed0000041
SyntenySed0000041
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTACTATGGATGCTGCGGCAGGTTATGGCAATGGCGGGGCAACCGCTCGCCTCCTTCACGACATTGCTGCATTACGGCGGCCTCCTCCCTCGGAGCTTGAACTTGCAGAGATTAGTTAGACCTGAGTTTCTTCACACTGAAAACTATCTTTTTCATTTTCTTGTCCAGGTGATTCATTGCTTTTGGTAA

mRNA sequence

ATGCTACTATGGATGCTGCGGCAGGTTATGGCAATGGCGGGGCAACCGCTCGCCTCCTTCACGACATTGCTGCATTACGGCGGCCTCCTCCCTCGGAGCTTGAACTTGCAGAGATTAGTTAGACCTGAGTTTCTTCACACTGAAAACTATCTTTTTCATTTTCTTGTCCAGGTGATTCATTGCTTTTGGTAA

Coding sequence (CDS)

ATGCTACTATGGATGCTGCGGCAGGTTATGGCAATGGCGGGGCAACCGCTCGCCTCCTTCACGACATTGCTGCATTACGGCGGCCTCCTCCCTCGGAGCTTGAACTTGCAGAGATTAGTTAGACCTGAGTTTCTTCACACTGAAAACTATCTTTTTCATTTTCTTGTCCAGGTGATTCATTGCTTTTGGTAA

Protein sequence

MLLWMLRQVMAMAGQPLASFTTLLHYGGLLPRSLNLQRLVRPEFLHTENYLFHFLVQVIHCFW
Homology
BLAST of Sed0000041 vs. NCBI nr
Match: KAG4109442.1 (hypothetical protein ERO13_1Z049586v2 [Gossypium hirsutum] >TYH28481.1 hypothetical protein ES288_A02G146100v1 [Gossypium darwinii] >TYJ46705.1 hypothetical protein E1A91_A02G136800v1 [Gossypium mustelinum])

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-12
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 0

Query: 1  MLLWMLRQVMAMAGQPLASFTTLLHYGGLLPRSLNLQRLVRPEFLHTENYLFHFLVQVIH 60
          M+  + R V A+  QP ASFTT+L+Y  LLPR+LNL+RLVRP+ LH ENYLFHFL+ ++ 
Sbjct: 7  MVRTLARLVTALVTQPAASFTTMLYYSHLLPRNLNLERLVRPQLLHPENYLFHFLISLLR 66

Query: 61 CFW 64
          CFW
Sbjct: 67 CFW 69

BLAST of Sed0000041 vs. NCBI nr
Match: KAG4154575.1 (hypothetical protein ERO13_D03G063400v2 [Gossypium hirsutum] >KJB13164.1 hypothetical protein B456_002G059800 [Gossypium raimondii] >TYH79598.1 hypothetical protein ES332_D03G074500v1 [Gossypium tomentosum] >TYI89680.1 hypothetical protein E1A91_D03G071600v1 [Gossypium mustelinum])

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-12
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 0

Query: 1  MLLWMLRQVMAMAGQPLASFTTLLHYGGLLPRSLNLQRLVRPEFLHTENYLFHFLVQVIH 60
          M+  + R V A+  QP ASFTT+L+Y  LLPR+LNL+RLVRP+ LH ENYLFHFL+ ++ 
Sbjct: 7  MVRTLARLVTALVTQPAASFTTMLYYSHLLPRNLNLERLVRPQLLHPENYLFHFLINLLR 66

Query: 61 CFW 64
          CFW
Sbjct: 67 CFW 69

BLAST of Sed0000041 vs. NCBI nr
Match: KAB2094055.1 (hypothetical protein ES319_A02G131900v1 [Gossypium barbadense])

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-12
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 0

Query: 1  MLLWMLRQVMAMAGQPLASFTTLLHYGGLLPRSLNLQRLVRPEFLHTENYLFHFLVQVIH 60
          M+  + R V A+  QP ASFTT+L+Y  LLPR+LNL+RLVRP+ LH ENYLFHFL+ ++ 
Sbjct: 7  MVRTLTRLVTALVTQPAASFTTMLYYSHLLPRNLNLERLVRPQLLHPENYLFHFLISLLR 66

Query: 61 CFW 64
          CFW
Sbjct: 67 CFW 69

BLAST of Sed0000041 vs. NCBI nr
Match: KAG8497091.1 (hypothetical protein CXB51_008337 [Gossypium anomalum])

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-12
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 0

Query: 1  MLLWMLRQVMAMAGQPLASFTTLLHYGGLLPRSLNLQRLVRPEFLHTENYLFHFLVQVIH 60
          M+  + R V A+  QP ASFTT+L+Y  LLPR+LNL+RLVRP+ LH ENYLFHFL+ ++ 
Sbjct: 4  MVRTLARLVTALVTQPAASFTTMLYYSHLLPRNLNLERLVRPQLLHPENYLFHFLINLLR 63

Query: 61 CFW 64
          CFW
Sbjct: 64 CFW 66

BLAST of Sed0000041 vs. NCBI nr
Match: KAG2722949.1 (hypothetical protein I3760_02G150800 [Carya illinoinensis])

HSP 1 Score: 80.1 bits (196), Expect = 7.5e-12
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 0

Query: 5  MLRQVMAMAGQPLASFTTLLHYGGLLPRSLNLQRLVRPEFLHTENYLFHFLVQVIHCFW 64
          ++R + A+  QP AS TTLL+Y  LLPR+LNL+RLVR EFL  ENYLFHFL+ ++ CFW
Sbjct: 11 LVRLLTALVAQPAASVTTLLYYSDLLPRNLNLERLVRTEFLDRENYLFHFLINILRCFW 69

BLAST of Sed0000041 vs. ExPASy TrEMBL
Match: A0A5D2LJW5 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D03G074500v1 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.6e-13
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 0

Query: 1  MLLWMLRQVMAMAGQPLASFTTLLHYGGLLPRSLNLQRLVRPEFLHTENYLFHFLVQVIH 60
          M+  + R V A+  QP ASFTT+L+Y  LLPR+LNL+RLVRP+ LH ENYLFHFL+ ++ 
Sbjct: 7  MVRTLARLVTALVTQPAASFTTMLYYSHLLPRNLNLERLVRPQLLHPENYLFHFLINLLR 66

Query: 61 CFW 64
          CFW
Sbjct: 67 CFW 69

BLAST of Sed0000041 vs. ExPASy TrEMBL
Match: A0A0D2Q1E4 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G059800 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.6e-13
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 0

Query: 1  MLLWMLRQVMAMAGQPLASFTTLLHYGGLLPRSLNLQRLVRPEFLHTENYLFHFLVQVIH 60
          M+  + R V A+  QP ASFTT+L+Y  LLPR+LNL+RLVRP+ LH ENYLFHFL+ ++ 
Sbjct: 7  MVRTLARLVTALVTQPAASFTTMLYYSHLLPRNLNLERLVRPQLLHPENYLFHFLINLLR 66

Query: 61 CFW 64
          CFW
Sbjct: 67 CFW 69

BLAST of Sed0000041 vs. ExPASy TrEMBL
Match: A0A5J5WPJ0 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A02G131900v1 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.6e-13
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 0

Query: 1  MLLWMLRQVMAMAGQPLASFTTLLHYGGLLPRSLNLQRLVRPEFLHTENYLFHFLVQVIH 60
          M+  + R V A+  QP ASFTT+L+Y  LLPR+LNL+RLVRP+ LH ENYLFHFL+ ++ 
Sbjct: 7  MVRTLTRLVTALVTQPAASFTTMLYYSHLLPRNLNLERLVRPQLLHPENYLFHFLISLLR 66

Query: 61 CFW 64
          CFW
Sbjct: 67 CFW 69

BLAST of Sed0000041 vs. ExPASy TrEMBL
Match: A0A5D2HDX0 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A02G146100v1 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.6e-13
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 0

Query: 1  MLLWMLRQVMAMAGQPLASFTTLLHYGGLLPRSLNLQRLVRPEFLHTENYLFHFLVQVIH 60
          M+  + R V A+  QP ASFTT+L+Y  LLPR+LNL+RLVRP+ LH ENYLFHFL+ ++ 
Sbjct: 7  MVRTLARLVTALVTQPAASFTTMLYYSHLLPRNLNLERLVRPQLLHPENYLFHFLISLLR 66

Query: 61 CFW 64
          CFW
Sbjct: 67 CFW 69

BLAST of Sed0000041 vs. ExPASy TrEMBL
Match: A0A5D3A5A8 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A02G136800v1 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.6e-13
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 0

Query: 1  MLLWMLRQVMAMAGQPLASFTTLLHYGGLLPRSLNLQRLVRPEFLHTENYLFHFLVQVIH 60
          M+  + R V A+  QP ASFTT+L+Y  LLPR+LNL+RLVRP+ LH ENYLFHFL+ ++ 
Sbjct: 7  MVRTLARLVTALVTQPAASFTTMLYYSHLLPRNLNLERLVRPQLLHPENYLFHFLISLLR 66

Query: 61 CFW 64
          CFW
Sbjct: 67 CFW 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG4109442.11.2e-1260.32hypothetical protein ERO13_1Z049586v2 [Gossypium hirsutum] >TYH28481.1 hypotheti... [more]
KAG4154575.11.2e-1260.32hypothetical protein ERO13_D03G063400v2 [Gossypium hirsutum] >KJB13164.1 hypothe... [more]
KAB2094055.11.2e-1260.32hypothetical protein ES319_A02G131900v1 [Gossypium barbadense][more]
KAG8497091.11.2e-1260.32hypothetical protein CXB51_008337 [Gossypium anomalum][more]
KAG2722949.17.5e-1261.02hypothetical protein I3760_02G150800 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D2LJW55.6e-1360.32Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D03G074500v1 P... [more]
A0A0D2Q1E45.6e-1360.32Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G059800 PE=4 ... [more]
A0A5J5WPJ05.6e-1360.32Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A02G131900v1 PE... [more]
A0A5D2HDX05.6e-1360.32Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A02G146100v1 PE=... [more]
A0A5D3A5A85.6e-1360.32Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A02G136800v1 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37900:SF3SUBFAMILY NOT NAMEDcoord: 1..63
NoneNo IPR availablePANTHERPTHR37900FAMILY NOT NAMEDcoord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0000041.1Sed0000041.1mRNA