Sed0022881.1 (mRNA) Chayote v1

Overview


Name	Sed0022881.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG01: 61032769 .. 61033904 (-)
Sequence length	977
RNA-Seq Expression	Sed0022881.1
Synteny	Sed0022881.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAGAAGTTCTGACTCGTCTTACCGGCCCTGCCGGTTAGTTCAATCTTGGGAAAAAACCAAATTGAACTCATTTAATGAGTTGGATTTGTATCTTGACACGTCAATGTTTGGAAATGACCATTTCTATCTAGAAGAATTTGAGGATGACGAAATATTAGTGCTCTTAAAAGTTTATGACCACAATAGGAGGAAGTTAAGCTTTGCAGGGAAGTGGTTTATAGATGTGAATGAGTCTCTTCAGATTAATTTGTCGTATTGCAATTACCATGAAGTTGATCCAGACTTTGGTTGGGCGGAGAATCTTTTGTTTTACAAGGTATATTTACTTCCTTATATAATTATCATGCCATAGTTTATGTTTTAATTATTTATTACATTTACTTTAGGAACTTTCTCCGTATGAAGAAGTTTCCTTCCTTCTTCTGGACAAGGAATTGCCTGTAAAAGAACTTGCACTATCACATGGGGACATCATATGTTACGAGGTCATTGGAAAGGAAGGTCTCCTTTCATATTTTAACTCCCTCCCTAGACCGTTGGTAAGTACTATTTTTAGTTTTATCATTTTGAAAATCAATATAATGCAGCTTCGGCCTTTTGCTAACCATGCTGCATGACATTGTGTTAGTTTGATTTGGCAGCTGAAGCTGCAATAGATGAGGCCGAAGCTGTTATAGCTGAGGCCGAAGCCGAAGGTGTTATACCTGGGGGTGAATCTGAAGCTGTTATAGCTAAGGCTGAAGCCAAAGCTGCATCAAAGTCTAAAGCATATGAAGCACTATGCATAGCTTCTGAAGCTTTATCAACAGCATCCAAAGCATTATCGAAAGCATCAGAAGCTGTGGCTAACGCAACGGAGTATCTTGCATATGACGATGCGCTTGTTGATGCTCCAAACAGCTATGAGGATAAATATGTCATTGATGCTGAGCAGGATGATTTGCAGCATATGCAAGATGACTCAAACTAACAAAAGTTGAACTGAATCAAATGAACTGTTCTTAAAGCTGATGTCCTATCTAAGTAGTTGGATTTACTGATTTGGTGAACTTTGACAGTTTAGTTGAGTTTCTCTTCGCTTGGACTTGCACTAATTTGAAGTGTATGAGTTCTATCCCTTTTCCCATCTTCCAA

mRNA sequence

AGGAGAAGTTCTGACTCGTCTTACCGGCCCTGCCGGTTAGTTCAATCTTGGGAAAAAACCAAATTGAACTCATTTAATGAGTTGGATTTGTATCTTGACACGTCAATGTTTGGAAATGACCATTTCTATCTAGAAGAATTTGAGGATGACGAAATATTAGTGCTCTTAAAAGTTTATGACCACAATAGGAGGAAGTTAAGCTTTGCAGGGAAGTGGTTTATAGATGTGAATGAGTCTCTTCAGATTAATTTGTCGTATTGCAATTACCATGAAGTTGATCCAGACTTTGGTTGGGCGGAGAATCTTTTGTTTTACAAGGAACTTTCTCCGTATGAAGAAGTTTCCTTCCTTCTTCTGGACAAGGAATTGCCTGTAAAAGAACTTGCACTATCACATGGGGACATCATATGTTACGAGGTCATTGGAAAGGAAGGTCTCCTTTCATATTTTAACTCCCTCCCTAGACCGTTGTTTGATTTGGCAGCTGAAGCTGCAATAGATGAGGCCGAAGCTGTTATAGCTGAGGCCGAAGCCGAAGGTGTTATACCTGGGGGTGAATCTGAAGCTGTTATAGCTAAGGCTGAAGCCAAAGCTGCATCAAAGTCTAAAGCATATGAAGCACTATGCATAGCTTCTGAAGCTTTATCAACAGCATCCAAAGCATTATCGAAAGCATCAGAAGCTGTGGCTAACGCAACGGAGTATCTTGCATATGACGATGCGCTTGTTGATGCTCCAAACAGCTATGAGGATAAATATGTCATTGATGCTGAGCAGGATGATTTGCAGCATATGCAAGATGACTCAAACTAACAAAAGTTGAACTGAATCAAATGAACTGTTCTTAAAGCTGATGTCCTATCTAAGTAGTTGGATTTACTGATTTGGTGAACTTTGACAGTTTAGTTGAGTTTCTCTTCGCTTGGACTTGCACTAATTTGAAGTGTATGAGTTCTATCCCTTTTCCCATCTTCCAA

Coding sequence (CDS)

ATGTTTGGAAATGACCATTTCTATCTAGAAGAATTTGAGGATGACGAAATATTAGTGCTCTTAAAAGTTTATGACCACAATAGGAGGAAGTTAAGCTTTGCAGGGAAGTGGTTTATAGATGTGAATGAGTCTCTTCAGATTAATTTGTCGTATTGCAATTACCATGAAGTTGATCCAGACTTTGGTTGGGCGGAGAATCTTTTGTTTTACAAGGAACTTTCTCCGTATGAAGAAGTTTCCTTCCTTCTTCTGGACAAGGAATTGCCTGTAAAAGAACTTGCACTATCACATGGGGACATCATATGTTACGAGGTCATTGGAAAGGAAGGTCTCCTTTCATATTTTAACTCCCTCCCTAGACCGTTGTTTGATTTGGCAGCTGAAGCTGCAATAGATGAGGCCGAAGCTGTTATAGCTGAGGCCGAAGCCGAAGGTGTTATACCTGGGGGTGAATCTGAAGCTGTTATAGCTAAGGCTGAAGCCAAAGCTGCATCAAAGTCTAAAGCATATGAAGCACTATGCATAGCTTCTGAAGCTTTATCAACAGCATCCAAAGCATTATCGAAAGCATCAGAAGCTGTGGCTAACGCAACGGAGTATCTTGCATATGACGATGCGCTTGTTGATGCTCCAAACAGCTATGAGGATAAATATGTCATTGATGCTGAGCAGGATGATTTGCAGCATATGCAAGATGACTCAAACTAA

Protein sequence

MFGNDHFYLEEFEDDEILVLLKVYDHNRRKLSFAGKWFIDVNESLQINLSYCNYHEVDPDFGWAENLLFYKELSPYEEVSFLLLDKELPVKELALSHGDIICYEVIGKEGLLSYFNSLPRPLFDLAAEAAIDEAEAVIAEAEAEGVIPGGESEAVIAKAEAKAASKSKAYEALCIASEALSTASKALSKASEAVANATEYLAYDDALVDAPNSYEDKYVIDAEQDDLQHMQDDSN

Homology

The following BLAST results are available for this feature:

BLAST of Sed0022881.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0022881.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0022881.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0022881.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 124..144
None	No IPR available	GENE3D	3.10.20.90		coord: 12..119 e-value: 1.5E-9 score: 39.9
IPR024729	Ubiquitin carboxyl-terminal hydrolase 7, ICP0-binding domain	PFAM	PF12436	USP7_ICP0_bdg	coord: 13..105 e-value: 2.9E-8 score: 33.4

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0022881	Sed0022881	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0022881.1-exon	Sed0022881.1-exon-LG01:61032769..61033274	exon
Sed0022881.1-exon	Sed0022881.1-exon-LG01:61033364..61033516	exon
Sed0022881.1-exon	Sed0022881.1-exon-LG01:61033587..61033904	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0022881.1-three_prime_utr	Sed0022881.1-three_prime_utr-LG01:61032769..61032932	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0022881.1-cds	Sed0022881.1-cds-LG01:61032933..61033274	CDS
Sed0022881.1-cds	Sed0022881.1-cds-LG01:61033364..61033516	CDS
Sed0022881.1-cds	Sed0022881.1-cds-LG01:61033587..61033799	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0022881.1-five_prime_utr	Sed0022881.1-five_prime_utr-LG01:61033800..61033904	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0022881.1	Sed0022881.1-protein	polypeptide