Sed0017721 (gene) Chayote v1

Overview


Name	Sed0017721
Type	gene
Organism	Sechium edule (Chayote v1)
Description	LSD1 zinc finger family protein
Location	LG01: 69806789 .. 69809314 (+)
RNA-Seq Expression	Sed0017721
Synteny	Sed0017721

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGGGGAGTATGCCTTTCTTCAAATGTCAAAACTTTTACATCCTTTCTCTCTTCCCCCCTCCACTCTATCTTCTCCAAGTTGCAAACCTATGAATTTGCCCCACTACTTCCCACCAAAAACTCCATTGCCTTTTTCAAGCTTTCTTTCTTGCTTGGTTTCTCCATTTCTGGTTTGTTTCCATACCTTTTCAAGATTTTAATTACACATTACATTACTTTACTTTACTCTTTTTGAGGGTTCTTCTCAAATTGTTTCATTTCATCCAATTTTCTGCCCAACCCATGATGCAATTTTCTGTCAAATCTCTACTTGTTTTGTTTTCTTAATCTGATTTTTGTGTTTTTTTAACTTGAAATTTCTCAACAGCCTCATCTTGAGAGAGCTTTTTTGCATGGGAAAGTAGAGCTTGTATTGTTTGTTACTGAACTAGTGAGCTTTTAAGAGCTTTGTTGAAGAACGAGGAGATTTCTGTAAATTAAGCTGCAAAATGCCACCAGTTCCTCTTGCTCCATATCCAACTCCTTCTGCTCCTTATACACCCCCTGCTAATGGTACTTCATAGCTTTGTTCTTTTCTTTTTGCGTTTTTGATAATCGGGAATTGGAGCTTTAATAAACTACTTACGGGCGCACCCTCGTCCGTGCCAAGGCTTAGACTCGGGAGACAATAATGTATTTTACAATTAAGCTCACTCGTGCTTTTTTGAATCTTAAAACTCCAAATGAGCATACCTTGGAGACTTTACTCATTTCTTAACTAGATTCTTGTTTGGTTGTTGATAAAATGTCTTGGTTGCCCATTTTTCAGCTTTCTGGCTGGCAAATTTATTGATTTTCTTTCAATTCTCTTCCTTTTTGCATTATCTCGTTTGAGTTTTGATTAGTTATTTAACATGATTCGGTTTAGTATTATATTGGGAGGTCTCGATTCGAATTCTCGCCGAATCATTTCATTCCCAATTTATATTGATTTTTACTTGATGGGTATATTCTCAATTTTCAAAACTATGAGTGAGGGAAGTAAAGTAACTCATAAGTTTAAGCTTTTGGGTTTATTGGTGATTTAACGTGATTTAACAGTGCTTCACTTTCAATGGAGGTGCCAATCAGATTGTTTGAGGACGCATATTCTTAGCCAATTTGATCTAGTTTTCTTGGTTTAAAATTAGGCTTTATTAAAAAAAATTCAACAATACTGGCCCAGTTTTGTTGGTTTAGAATTAGGCTATATTACAAACTTTTCACCATGTGCAAGGAAGAGTTATGTATTGGAGTTTCTATGTGTTTGTCTTTGCTTCCATAGAACAGTGATTTGTTATTGGTATACTCAATTGAGGTTGTAAATATGCATTTTGTTGATCATCAGCCGCACAGAGCCAGCTTGTGTGCTCCGGATGTCGAAACCTTTTGCTTTATCCGGTTGGAGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAGTTACTGCCGTACCGCCTCCCGGTATTTCGCCTCTTCCTCTTTTCCGTTTCCATTTTTCGGTTTCTACTTTCTAGCTCAAATGAATTTGAAAAATGCTGTTTGGGAATTCTTTTTCTTTTGAAGAAAGGTTGGAAATGTTAGTTGGTTTGTGTCTAAAACAGGCACAGAAATGGCACAACTGGTGTGCGGAGGCTGCCATACTCTGCTCATGTATATTCGCGGTGCTACGAGTGTACAGTGCTCGTGTTGCCACACCGTCAACTTAGCTTTAGAAGGTATAGAAATCTAACTATTTTAGGGATTAATTCTATTCATATTAAATTTATCATGCTAAGCATCACAAACAAGTCTTTGTAGCTTTCTTAGGCTGCCTAAAACAATTCTTAGCTAGTTCCCCTTCATGGATAGCAGCATGATGCTGTTACATATGTTTCATGTTACTTTTGGTTCTCTATTCATTAGAAAAGTGTATATTCAAATCGATTTTCTGGTAATATTTTGAGGTTGCAAATCTTAATTTTTTATGGAACGACTCGTGTGAATTGATCCCAGAATTTATACCGTTACAGCGAATCAGGTGGCGCACGTTAGCTGTGGAAACTGCAGGATGCTACTGATGTATCAGTATGGAGCACGTTCAGTGAAATGTGCAGTATGCAATTTTGTGACTTCAGTTGGGGTCAGTATAAAGCTTTCATTTTGTCCAGTTTCATGAGTTTCTCTATTTGACACGAACACAAACTTGAGAAAAATACATTCAATCTAGATCATCGATGGTTCGAAAAATACTGGTTTAGATATTAGGCATCATCAGAAAGCTCAAAACACCAAACAGAACTGATATTCAAAATGCTGCCACCAAAGATTATGCCACATGCCTTAGTTTTAGTTCTATCTTTCCATTGCCATTTCTAACTTCAACGTGAAGTGAAGCATCTCACAGTATTAATGTATTTCTTTGTAGATGTCGACGAGTGCAATCGAACAAAAAGCCTAACGGCTAAAGTTATCGTAAACATGGTTGTCCCCAACTCAAGAACTGCGGCTTCGCAATATTCATAA

mRNA sequence

ATGAAAGGGGGAGTATGCCTTTCTTCAAATGTCAAAACTTTTACATCCTTTCTCTCTTCCCCCCTCCACTCTATCTTCTCCAAGTTGCAAACCTATGAATTTGCCCCACTACTTCCCACCAAAAACTCCATTGCCTTTTTCAAGCTTTCTTTCTTGCTTGGTTTCTCCATTTCTGGTTTTGATTTGTTATTGGTATACTCAATTGAGGTTGTAAATATGCATTTTGTTGATCATCAGCCGCACAGAGCCAGCTTGTGTGCTCCGGATGTCGAAACCTTTTGCTTTATCCGGTTGGAGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAAAAGGTTGGAAATGTTAGTTGGTTTGTGTCTAAAACAGGCACAGAAATGGCACAACTGGTGTGCGGAGGCTGCCATACTCTGCTCATGTATATTCGCGGTGCTACGAGTGTACAGTGCTCGTGTTGCCACACCGTCAACTTAGCTTTAGAAGCGAATCAGGTGGCGCACGTTAGCTGTGGAAACTGCAGGATGCTACTGATGTATCAGTATGGAGCACGTTCAGTGAAATGTGCAGTATGCAATTTTGTGACTTCAGTTGGGGTCAGTATAAAGCTTTCATTTTGTCCAATATTAGGCATCATCAGAAAGCTCAAAACACCAAACAGAACTGATATTCAAAATGCTGCCACCAAAGATTATGCCACATGCCTTAATGTCGACGAGTGCAATCGAACAAAAAGCCTAACGGCTAAAGTTATCGTAAACATGGTTGTCCCCAACTCAAGAACTGCGGCTTCGCAATATTCATAA

Coding sequence (CDS)

ATGAAAGGGGGAGTATGCCTTTCTTCAAATGTCAAAACTTTTACATCCTTTCTCTCTTCCCCCCTCCACTCTATCTTCTCCAAGTTGCAAACCTATGAATTTGCCCCACTACTTCCCACCAAAAACTCCATTGCCTTTTTCAAGCTTTCTTTCTTGCTTGGTTTCTCCATTTCTGGTTTTGATTTGTTATTGGTATACTCAATTGAGGTTGTAAATATGCATTTTGTTGATCATCAGCCGCACAGAGCCAGCTTGTGTGCTCCGGATGTCGAAACCTTTTGCTTTATCCGGTTGGAGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAAAAGGTTGGAAATGTTAGTTGGTTTGTGTCTAAAACAGGCACAGAAATGGCACAACTGGTGTGCGGAGGCTGCCATACTCTGCTCATGTATATTCGCGGTGCTACGAGTGTACAGTGCTCGTGTTGCCACACCGTCAACTTAGCTTTAGAAGCGAATCAGGTGGCGCACGTTAGCTGTGGAAACTGCAGGATGCTACTGATGTATCAGTATGGAGCACGTTCAGTGAAATGTGCAGTATGCAATTTTGTGACTTCAGTTGGGGTCAGTATAAAGCTTTCATTTTGTCCAATATTAGGCATCATCAGAAAGCTCAAAACACCAAACAGAACTGATATTCAAAATGCTGCCACCAAAGATTATGCCACATGCCTTAATGTCGACGAGTGCAATCGAACAAAAAGCCTAACGGCTAAAGTTATCGTAAACATGGTTGTCCCCAACTCAAGAACTGCGGCTTCGCAATATTCATAA

Protein sequence

MKGGVCLSSNVKTFTSFLSSPLHSIFSKLQTYEFAPLLPTKNSIAFFKLSFLLGFSISGFDLLLVYSIEVVNMHFVDHQPHRASLCAPDVETFCFIRLEQPLFAVQFVMQKVGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIKLSFCPILGIIRKLKTPNRTDIQNAATKDYATCLNVDECNRTKSLTAKVIVNMVVPNSRTAASQYS

Homology

[Close]

BLAST of Sed0017721 vs. NCBI nr
Match: XP_038887481.1 (protein LOL1 isoform X1 [Benincasa hispida] >XP_038887482.1 protein LOL1 isoform X1 [Benincasa hispida])

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-40
Identity = 100/151 (66.23%), Postives = 104/151 (68.87%), Query Frame = 0


Query: 112 VGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGN 171
           V N    V   GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGN
Sbjct: 49  VCNAVTTVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGN 108

Query: 172 CRMLLMYQYGARSVKCAVCNFVTSVGVSIKLSFCPILGIIRKLKTPNRTDIQNAATKDYA 231
           CRMLLMYQYGARSVKCAVCNFVTSVGV                                 
Sbjct: 109 CRMLLMYQYGARSVKCAVCNFVTSVGV--------------------------------- 163

Query: 232 TCLNVDECNRTKSLTAKVIVNMVVPNSRTAA 263
              +V+E +R+KSL AKVIVNMVVPNS TAA
Sbjct: 169 ---DVNEHDRSKSLIAKVIVNMVVPNSTTAA 163

[Close]

BLAST of Sed0017721 vs. NCBI nr
Match: XP_009785779.1 (PREDICTED: protein LSD1-like, partial [Nicotiana sylvestris])

HSP 1 Score: 164.5 bits (415), Expect = 1.3e-36
Identity = 77/82 (93.90%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 122 TGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYG 181
           TGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQYG
Sbjct: 1   TGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYG 60

Query: 182 ARSVKCAVCNFVTSVGVSIKLS 204
           ARSVKCAVCNF+T+VGVSIK S
Sbjct: 61  ARSVKCAVCNFMTAVGVSIKFS 82

[Close]

BLAST of Sed0017721 vs. NCBI nr
Match: PHU28673.1 (Protein LOL1, partial [Capsicum chinense])

HSP 1 Score: 164.1 bits (414), Expect = 1.7e-36
Identity = 89/139 (64.03%), Postives = 98/139 (70.50%), Query Frame = 0


Query: 71  VNMHFVDHQPHRASLCAPDVETFCFIRLEQPLF-AVQFVMQKVG---------NVSWFVS 130
           V++H   HQPH   L     ET       +P+   +  ++  VG         N    V 
Sbjct: 10  VSLH---HQPHLHHLLTLSGETASRSSRIKPVHKIINLLLYPVGATSVCCAVCNAVTAVP 69

Query: 131 KTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQY 190
             GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQY
Sbjct: 70  PPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQY 129

Query: 191 GARSVKCAVCNFVTSVGVS 200
           GARSVKCAVCNFVTSVGVS
Sbjct: 130 GARSVKCAVCNFVTSVGVS 145

[Close]

BLAST of Sed0017721 vs. NCBI nr
Match: RLM60365.1 (hypothetical protein C2845_PM14G03340 [Panicum miliaceum])

HSP 1 Score: 163.3 bits (412), Expect = 2.9e-36
Identity = 83/121 (68.60%), Postives = 95/121 (78.51%), Query Frame = 0


Query: 119 VSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMY 178
           V   GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMY
Sbjct: 54  VPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMY 113

Query: 179 QYGARSVKCAVCNFVTSVGVSIK--LSFCPI----LGIIRKLKTPNRTDIQNAATKDYAT 234
           QYGARSVKCAVCNFVTSVG S+   L++C      L  ++ L++P +   +  A   + T
Sbjct: 114 QYGARSVKCAVCNFVTSVGFSLPSGLTWCRAEAQQLMFLKILRSPMKAASEKDALSAHET 173

[Close]

BLAST of Sed0017721 vs. NCBI nr
Match: XP_019445974.1 (PREDICTED: protein LOL1 isoform X2 [Lupinus angustifolius])

HSP 1 Score: 162.9 bits (411), Expect = 3.7e-36
Identity = 80/89 (89.89%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 112 VGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGN 171
           V N    V   GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGN
Sbjct: 45  VCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGN 104

Query: 172 CRMLLMYQYGARSVKCAVCNFVTSVGVSI 201
           CRMLLMYQYGARSVKCAVCNFVTSVGVSI
Sbjct: 105 CRMLLMYQYGARSVKCAVCNFVTSVGVSI 133

[Close]

BLAST of Sed0017721 vs. ExPASy Swiss-Prot
Match: Q0J7V9 (Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 7.1e-38
Identity = 75/81 (92.59%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 119 VSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMY 178
           V   GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMY
Sbjct: 95  VPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMY 154

Query: 179 QYGARSVKCAVCNFVTSVGVS 200
           QYGARSVKCAVCNFVTSVG S
Sbjct: 155 QYGARSVKCAVCNFVTSVGAS 175

[Close]

BLAST of Sed0017721 vs. ExPASy Swiss-Prot
Match: Q93ZB1 (Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.5e-37
Identity = 77/88 (87.50%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 112 VGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGN 171
           V N    V   GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGN
Sbjct: 57  VCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGN 116

Query: 172 CRMLLMYQYGARSVKCAVCNFVTSVGVS 200
           C MLLMYQYGARSVKCAVCNFVTSVG S
Sbjct: 117 CMMLLMYQYGARSVKCAVCNFVTSVGGS 144

[Close]

BLAST of Sed0017721 vs. ExPASy Swiss-Prot
Match: Q2QMB3 (Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.8e-23
Identity = 48/85 (56.47%), Postives = 63/85 (74.12%), Query Frame = 0


Query: 115 VSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRM 174
           VS      G ++A L+CGGC TLLMY R ATSV+CSCC TVNL    + +AH++CG C+ 
Sbjct: 31  VSSTAPSPGMDIAHLICGGCRTLLMYTRNATSVRCSCCDTVNLVRPVSSIAHLNCGQCQT 90

Query: 175 LLMYQYGARSVKCAVCNFVTSVGVS 200
           +LMY YGA SVKCA+CNF+T+ G++
Sbjct: 91  VLMYPYGAPSVKCAICNFITNTGMN 115

[Close]

BLAST of Sed0017721 vs. ExPASy Swiss-Prot
Match: Q6ASS2 (Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 8.4e-23
Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 125 EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARS 184
           EMA L+CGGC TLLMY R A +V+CSCC TVNL    N +AHVSCG CR  LMY YGA S
Sbjct: 42  EMAHLICGGCRTLLMYTRNADTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPS 101

Query: 185 VKCAVCNFVTSVGVS 200
           VKCA+C+++T+ G++
Sbjct: 102 VKCAICHYITNTGMN 116

[Close]

BLAST of Sed0017721 vs. ExPASy Swiss-Prot
Match: P94077 (Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.0e-20
Identity = 49/84 (58.33%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 125 EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRML 184
           +MA ++CGGC T+LMY RGA+SV+CSCC T NL    +NQVAH        ++CG+CR  
Sbjct: 47  DMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTT 106

Query: 185 LMYQYGARSVKCAVCNFVTSVGVS 200
           LMY YGA SVKCAVC FVT+V +S
Sbjct: 107 LMYPYGASSVKCAVCQFVTNVNMS 130

[Close]

BLAST of Sed0017721 vs. ExPASy TrEMBL
Match: M1BH58 (LOL1 (LSD ONE LIKE 1) OS=Solanum tuberosum OX=4113 GN=102593263 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.6e-37
Identity = 81/92 (88.04%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 112 VGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGN 171
           V N    V   GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGN
Sbjct: 49  VCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGN 108

Query: 172 CRMLLMYQYGARSVKCAVCNFVTSVGVSIKLS 204
           CRMLLMYQYGARSVKCAVCNFVTSVGVSIK S
Sbjct: 109 CRMLLMYQYGARSVKCAVCNFVTSVGVSIKSS 140

[Close]

BLAST of Sed0017721 vs. ExPASy TrEMBL
Match: A0A1U7XFQ3 (protein LSD1-like OS=Nicotiana sylvestris OX=4096 GN=LOC104233995 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 6.2e-37
Identity = 77/82 (93.90%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 122 TGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYG 181
           TGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQYG
Sbjct: 1   TGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYG 60

Query: 182 ARSVKCAVCNFVTSVGVSIKLS 204
           ARSVKCAVCNF+T+VGVSIK S
Sbjct: 61  ARSVKCAVCNFMTAVGVSIKFS 82

[Close]

BLAST of Sed0017721 vs. ExPASy TrEMBL
Match: A0A2G3DCI1 (Protein LOL1 (Fragment) OS=Capsicum chinense OX=80379 GN=BC332_00766 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 8.1e-37
Identity = 89/139 (64.03%), Postives = 98/139 (70.50%), Query Frame = 0


Query: 71  VNMHFVDHQPHRASLCAPDVETFCFIRLEQPLF-AVQFVMQKVG---------NVSWFVS 130
           V++H   HQPH   L     ET       +P+   +  ++  VG         N    V 
Sbjct: 10  VSLH---HQPHLHHLLTLSGETASRSSRIKPVHKIINLLLYPVGATSVCCAVCNAVTAVP 69

Query: 131 KTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQY 190
             GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQY
Sbjct: 70  PPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQY 129

Query: 191 GARSVKCAVCNFVTSVGVS 200
           GARSVKCAVCNFVTSVGVS
Sbjct: 130 GARSVKCAVCNFVTSVGVS 145

[Close]

BLAST of Sed0017721 vs. ExPASy TrEMBL
Match: A0A3L6PNX9 (Uncharacterized protein OS=Panicum miliaceum OX=4540 GN=C2845_PM14G03340 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.4e-36
Identity = 83/121 (68.60%), Postives = 95/121 (78.51%), Query Frame = 0


Query: 119 VSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMY 178
           V   GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMY
Sbjct: 54  VPAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMY 113

Query: 179 QYGARSVKCAVCNFVTSVGVSIK--LSFCPI----LGIIRKLKTPNRTDIQNAATKDYAT 234
           QYGARSVKCAVCNFVTSVG S+   L++C      L  ++ L++P +   +  A   + T
Sbjct: 114 QYGARSVKCAVCNFVTSVGFSLPSGLTWCRAEAQQLMFLKILRSPMKAASEKDALSAHET 173

[Close]

BLAST of Sed0017721 vs. ExPASy TrEMBL
Match: A0A7J8XQF1 (Uncharacterized protein (Fragment) OS=Gossypium aridum OX=34290 GN=Goari_007275 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.8e-36
Identity = 79/90 (87.78%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 112 VGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGN 171
           V N    V   GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGN
Sbjct: 27  VCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGN 86

Query: 172 CRMLLMYQYGARSVKCAVCNFVTSVGVSIK 202
           CRMLLMYQYGARSVKCAVCNFVTSVGVS++
Sbjct: 87  CRMLLMYQYGARSVKCAVCNFVTSVGVSLQ 116

[Close]

BLAST of Sed0017721 vs. TAIR 10
Match: AT1G32540.1 (lsd one like 1 )

HSP 1 Score: 159.8 bits (403), Expect = 2.9e-39
Identity = 91/138 (65.94%), Postives = 97/138 (70.29%), Query Frame = 0


Query: 62  LLLVYSIEVVNMHFVDHQPHRASLCAPDVETFCFIRLEQPLFAVQFVMQKVGNVSWFVSK 121
           L LV  I   N+ FV     ++ L    V + C   L  P+ A   V   V N    V  
Sbjct: 45  LFLVKKINKNNLRFVGSTSGQSQL----VCSGCRNLLMYPVGATS-VCCAVCNAVTAVPP 104

Query: 122 TGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYG 181
            GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLLMYQYG
Sbjct: 105 PGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYG 164

Query: 182 ARSVKCAVCNFVTSVGVS 200
           ARSVKCAVCNFVTSVG S
Sbjct: 165 ARSVKCAVCNFVTSVGGS 177

[Close]

BLAST of Sed0017721 vs. TAIR 10
Match: AT1G32540.2 (lsd one like 1 )

HSP 1 Score: 156.8 bits (395), Expect = 2.5e-38
Identity = 77/88 (87.50%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 112 VGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGN 171
           V N    V   GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGN
Sbjct: 57  VCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGN 116

Query: 172 CRMLLMYQYGARSVKCAVCNFVTSVGVS 200
           C MLLMYQYGARSVKCAVCNFVTSVG S
Sbjct: 117 CMMLLMYQYGARSVKCAVCNFVTSVGGS 144

[Close]

BLAST of Sed0017721 vs. TAIR 10
Match: AT1G32540.3 (lsd one like 1 )

HSP 1 Score: 156.8 bits (395), Expect = 2.5e-38
Identity = 77/88 (87.50%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 112 VGNVSWFVSKTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGN 171
           V N    V   GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGN
Sbjct: 57  VCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGN 116

Query: 172 CRMLLMYQYGARSVKCAVCNFVTSVGVS 200
           C MLLMYQYGARSVKCAVCNFVTSVG S
Sbjct: 117 CMMLLMYQYGARSVKCAVCNFVTSVGGS 144

[Close]

BLAST of Sed0017721 vs. TAIR 10
Match: AT4G20380.2 (LSD1 zinc finger family protein )

HSP 1 Score: 102.1 bits (253), Expect = 7.3e-22
Identity = 49/84 (58.33%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 125 EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRML 184
           +MA ++CGGC T+LMY RGA+SV+CSCC T NL    +NQVAH        ++CG+CR  
Sbjct: 47  DMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTT 106

Query: 185 LMYQYGARSVKCAVCNFVTSVGVS 200
           LMY YGA SVKCAVC FVT+V +S
Sbjct: 107 LMYPYGASSVKCAVCQFVTNVNMS 130

[Close]

BLAST of Sed0017721 vs. TAIR 10
Match: AT4G20380.1 (LSD1 zinc finger family protein )

HSP 1 Score: 102.1 bits (253), Expect = 7.3e-22
Identity = 49/84 (58.33%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 125 EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRML 184
           +MA ++CGGC T+LMY RGA+SV+CSCC T NL    +NQVAH        ++CG+CR  
Sbjct: 42  DMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTT 101

Query: 185 LMYQYGARSVKCAVCNFVTSVGVS 200
           LMY YGA SVKCAVC FVT+V +S
Sbjct: 102 LMYPYGASSVKCAVCQFVTNVNMS 125

The following BLAST results are available for this feature:

BLAST of Sed0017721 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887481.1	1.1e-40	66.23	protein LOL1 isoform X1 [Benincasa hispida] >XP_038887482.1 protein LOL1 isoform...	[more]
XP_009785779.1	1.3e-36	93.90	PREDICTED: protein LSD1-like, partial [Nicotiana sylvestris]	[more]
PHU28673.1	1.7e-36	64.03	Protein LOL1, partial [Capsicum chinense]	[more]
RLM60365.1	2.9e-36	68.60	hypothetical protein C2845_PM14G03340 [Panicum miliaceum]	[more]
XP_019445974.1	3.7e-36	89.89	PREDICTED: protein LOL1 isoform X2 [Lupinus angustifolius]	[more]

BLAST of Sed0017721 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0J7V9	7.1e-38	92.59	Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1	[more]
Q93ZB1	3.5e-37	87.50	Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1	[more]
Q2QMB3	3.8e-23	56.47	Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1	[more]
Q6ASS2	8.4e-23	62.67	Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1	[more]
P94077	1.0e-20	58.33	Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1	[more]

BLAST of Sed0017721 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
M1BH58	3.6e-37	88.04	LOL1 (LSD ONE LIKE 1) OS=Solanum tuberosum OX=4113 GN=102593263 PE=4 SV=1	[more]
A0A1U7XFQ3	6.2e-37	93.90	protein LSD1-like OS=Nicotiana sylvestris OX=4096 GN=LOC104233995 PE=4 SV=1	[more]
A0A2G3DCI1	8.1e-37	64.03	Protein LOL1 (Fragment) OS=Capsicum chinense OX=80379 GN=BC332_00766 PE=4 SV=1	[more]
A0A3L6PNX9	1.4e-36	68.60	Uncharacterized protein OS=Panicum miliaceum OX=4540 GN=C2845_PM14G03340 PE=4 SV...	[more]
A0A7J8XQF1	1.8e-36	87.78	Uncharacterized protein (Fragment) OS=Gossypium aridum OX=34290 GN=Goari_007275 ...	[more]

BLAST of Sed0017721 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32540.1	2.9e-39	65.94	lsd one like 1	[more]
AT1G32540.2	2.5e-38	87.50	lsd one like 1	[more]
AT1G32540.3	2.5e-38	87.50	lsd one like 1	[more]
AT4G20380.2	7.3e-22	58.33	LSD1 zinc finger family protein	[more]
AT4G20380.1	7.3e-22	58.33	LSD1 zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	TIGRFAM	TIGR01053	TIGR01053	coord: 128..157 e-value: 2.2E-14 score: 50.8 coord: 166..196 e-value: 4.6E-11 score: 40.1
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 131..155 e-value: 3.6E-12 score: 45.9 coord: 169..193 e-value: 2.0E-12 score: 46.7
None	No IPR available	PANTHER	PTHR31747:SF1	PROTEIN LOL1	coord: 112..200
IPR040319	LSD1-like	PANTHER	PTHR31747	PROTEIN LSD1	coord: 112..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017721.1	Sed0017721.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus