CcUC04G060630.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC04G060630.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Retrotransposon protein
Location	CicolChr04: 5312308 .. 5312877 (+)
Sequence length	489
RNA-Seq Expression	CcUC04G060630.1
Synteny	CcUC04G060630.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCAACAAAAATTTCCAGGGTGTTCCATACAAGTAAACCCAAATCTAGAGTCTAGGTTCAGGACGTCGAAGAGACAATACAACGTGATCGCTGAAATGTTGGGCCCAGGATGTAGTGGGTTTAGTTGGAACACGGAGCAAAAGTGTATTGACTGTGAGCCTGAGATATTTGATGTGTGGGTTAAGGTAATGAACAAAATTTATTGTTTGTTATATGTTTTTTTAAATATATTTTAGCCAAAACATAACACATTTCATCTCATACAGAGTCATCCGAGTGCAAAAGGACTGAGGCATAAGTCATTTTCGTTCTATGATGACTTGGCGATTGTATATGGCAAAGACAAAGCAACAGGGAGTTGTGCCACTACCACTGCTGAGGTCGGATTTGAACCTGTAGTGGAAGAGGAGAATGAGGACATTTTAAATAACCAATCCCCATACTTTGAAAATTTTTATATTCCTGATCCACCGTTCGCCAGCTCGCCCACATCAGAAGACCTTCCAACTACCCCAGGCGGTAGAGGGGCTGGGAGTAGCATGCCAACAAGAAGTAAGATGTTTTGA

mRNA sequence

ATGATGCAACAAAAATTTCCAGGGTGTTCCATACAAGTAAACCCAAATCTAGAGTCTAGGTTCAGGACGTCGAAGAGACAATACAACGTGATCGCTGAAATGTTGGGCCCAGGATGTAGTGGGTTTAGTTGGAACACGGAGCAAAAGTGTATTGACTGTGAGCCTGAGATATTTGATGTGTGGGTTAAGAGTCATCCGAGTGCAAAAGGACTGAGGCATAAGTCATTTTCGTTCTATGATGACTTGGCGATTGTATATGGCAAAGACAAAGCAACAGGGAGTTGTGCCACTACCACTGCTGAGGTCGGATTTGAACCTGTAGTGGAAGAGGAGAATGAGGACATTTTAAATAACCAATCCCCATACTTTGAAAATTTTTATATTCCTGATCCACCGTTCGCCAGCTCGCCCACATCAGAAGACCTTCCAACTACCCCAGGCGGTAGAGGGGCTGGGAGTAGCATGCCAACAAGAAGTAAGATGTTTTGA

Coding sequence (CDS)

ATGATGCAACAAAAATTTCCAGGGTGTTCCATACAAGTAAACCCAAATCTAGAGTCTAGGTTCAGGACGTCGAAGAGACAATACAACGTGATCGCTGAAATGTTGGGCCCAGGATGTAGTGGGTTTAGTTGGAACACGGAGCAAAAGTGTATTGACTGTGAGCCTGAGATATTTGATGTGTGGGTTAAGAGTCATCCGAGTGCAAAAGGACTGAGGCATAAGTCATTTTCGTTCTATGATGACTTGGCGATTGTATATGGCAAAGACAAAGCAACAGGGAGTTGTGCCACTACCACTGCTGAGGTCGGATTTGAACCTGTAGTGGAAGAGGAGAATGAGGACATTTTAAATAACCAATCCCCATACTTTGAAAATTTTTATATTCCTGATCCACCGTTCGCCAGCTCGCCCACATCAGAAGACCTTCCAACTACCCCAGGCGGTAGAGGGGCTGGGAGTAGCATGCCAACAAGAAGTAAGATGTTTTGA

Protein sequence

MMQQKFPGCSIQVNPNLESRFRTSKRQYNVIAEMLGPGCSGFSWNTEQKCIDCEPEIFDVWVKSHPSAKGLRHKSFSFYDDLAIVYGKDKATGSCATTTAEVGFEPVVEEENEDILNNQSPYFENFYIPDPPFASSPTSEDLPTTPGGRGAGSSMPTRSKMF

Homology

[Close]

BLAST of CcUC04G060630.1 vs. NCBI nr
Match: TYJ96933.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 139.8 bits (351), Expect = 2.1e-29
Identity = 70/162 (43.21%), Postives = 102/162 (62.96%), Query Frame = 0


Query: 1   MMQQKFPGCSIQVNPNLESRFRTSKRQYNVIAEMLGPGCSGFSWNTEQKCIDCEPEIFDV 60
           +M++K P  +IQV  NLESR +  K+QY  IA+M+GP CS F WN E+KCI+ E  +FD 
Sbjct: 52  LMKEKIPRSNIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDD 111

Query: 61  WVKSHPSAKGLRHKSFSFYDDLAIVYGKDKATGSCATTTAEVGFEPVVEEENEDILNNQS 120
           WVK HP+A+GL +K F+++ DL IV+G+DKATG       E+  +   + E +D+  N  
Sbjct: 112 WVKGHPNARGLLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTEEDDMDIN-- 171

Query: 121 PYFENFYIPDPPFASSPTSEDLPTT--PGGRGAGSSMPTRSK 161
              E+F IP+P     P+ ED+P+T       AGSS P++ +
Sbjct: 172 --LEDFDIPNPHGLEPPSGEDMPSTLISMTHDAGSSRPSKKR 209

[Close]

BLAST of CcUC04G060630.1 vs. NCBI nr
Match: XP_008455678.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 2.1e-29
Identity = 70/162 (43.21%), Postives = 102/162 (62.96%), Query Frame = 0


Query: 1   MMQQKFPGCSIQVNPNLESRFRTSKRQYNVIAEMLGPGCSGFSWNTEQKCIDCEPEIFDV 60
           +M++K P  +IQV  NLESR +  K+QY  IA+M+GP CS F WN E+KCI+ E  +FD 
Sbjct: 84  LMKEKIPRSNIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDD 143

Query: 61  WVKSHPSAKGLRHKSFSFYDDLAIVYGKDKATGSCATTTAEVGFEPVVEEENEDILNNQS 120
           WVK HP+A+GL +K F+++ DL IV+G+DKATG       E+  +   + E +D+  N  
Sbjct: 144 WVKGHPNARGLLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTEEDDMDIN-- 203

Query: 121 PYFENFYIPDPPFASSPTSEDLPTT--PGGRGAGSSMPTRSK 161
              E+F IP+P     P+ ED+P+T       AGSS P++ +
Sbjct: 204 --LEDFDIPNPHGLEPPSGEDMPSTLISMTHDAGSSRPSKKR 241

[Close]

BLAST of CcUC04G060630.1 vs. NCBI nr
Match: TYK26842.1 (uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 139.8 bits (351), Expect = 2.1e-29
Identity = 70/162 (43.21%), Postives = 103/162 (63.58%), Query Frame = 0


Query: 1   MMQQKFPGCSIQVNPNLESRFRTSKRQYNVIAEMLGPGCSGFSWNTEQKCIDCEPEIFDV 60
           +M++K    +IQV PNLES  +  K+QY  IAEM+GP CSGFSWN E+KCI+ E  + + 
Sbjct: 137 LMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSND 196

Query: 61  WVKSHPSAKGLRHKSFSFYDDLAIVYGKDKATGSCATTTAEVGFEPVVEEENEDILNNQS 120
           WVK H +A+ L +K F ++ DL IV+G+D+ATG    T  E+G +   + E +D++ N  
Sbjct: 197 WVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGSQTARDTEEDDMIIN-- 256

Query: 121 PYFENFYIPDPPFASSPTSEDLPTTPG--GRGAGSSMPTRSK 161
              E+F IP+P     P+ ED+P+TP      AGSS P++ +
Sbjct: 257 --LEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKR 294

[Close]

BLAST of CcUC04G060630.1 vs. NCBI nr
Match: CAD1817157.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 138.7 bits (348), Expect = 4.6e-29
Identity = 63/127 (49.61%), Postives = 86/127 (67.72%), Query Frame = 0


Query: 2   MQQKFPGCSIQVNPNLESRFRTSKRQYNVIAEMLGPGCSGFSWNTEQKCIDCEPEIFDVW 61
           M ++ PGC ++  P++ESRF+  KRQYN I+EMLGP  SGF WN  +KCI CE  +FD W
Sbjct: 61  MYERLPGCQLKGVPHIESRFKLWKRQYNTISEMLGPAASGFGWNDAEKCIICEKTVFDAW 120

Query: 62  VKSHPSAKGLRHKSFSFYDDLAIVYGKDKATGSCATTTAEVGFEPVVEEENEDILNNQSP 121
           VKSHP+A GLR KSF + + L++V+GKD+ATG+ A + A+     V EEE     + Q P
Sbjct: 121 VKSHPTAAGLRGKSFPYLEQLSVVFGKDRATGTGAESAADAA-RNVEEEELRTHASTQDP 180

Query: 122 YFENFYI 129
             E F++
Sbjct: 181 DVEMFFM 186

[Close]

BLAST of CcUC04G060630.1 vs. NCBI nr
Match: KAA0033487.1 (uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 137.5 bits (345), Expect = 1.0e-28
Identity = 69/162 (42.59%), Postives = 102/162 (62.96%), Query Frame = 0


Query: 1   MMQQKFPGCSIQVNPNLESRFRTSKRQYNVIAEMLGPGCSGFSWNTEQKCIDCEPEIFDV 60
           +M++K    +IQV PNLES  +  K+QY  IAEM+GP CSGFSWN E+KCI+ E  + + 
Sbjct: 137 LMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSND 196

Query: 61  WVKSHPSAKGLRHKSFSFYDDLAIVYGKDKATGSCATTTAEVGFEPVVEEENEDILNNQS 120
           WVK H +A+ L +K F ++ DL IV+G+D+ATG    T  E+G +   + E +D++ N  
Sbjct: 197 WVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGSQTARDTEEDDMIIN-- 256

Query: 121 PYFENFYIPDPPFASSPTSEDLPTTPG--GRGAGSSMPTRSK 161
              E+F IP+P     P+ ED+P+TP      AGS  P++ +
Sbjct: 257 --LEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSFRPSKKR 294

[Close]

BLAST of CcUC04G060630.1 vs. ExPASy TrEMBL
Match: A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.0e-29
Identity = 70/162 (43.21%), Postives = 103/162 (63.58%), Query Frame = 0


Query: 1   MMQQKFPGCSIQVNPNLESRFRTSKRQYNVIAEMLGPGCSGFSWNTEQKCIDCEPEIFDV 60
           +M++K    +IQV PNLES  +  K+QY  IAEM+GP CSGFSWN E+KCI+ E  + + 
Sbjct: 137 LMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSND 196

Query: 61  WVKSHPSAKGLRHKSFSFYDDLAIVYGKDKATGSCATTTAEVGFEPVVEEENEDILNNQS 120
           WVK H +A+ L +K F ++ DL IV+G+D+ATG    T  E+G +   + E +D++ N  
Sbjct: 197 WVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGSQTARDTEEDDMIIN-- 256

Query: 121 PYFENFYIPDPPFASSPTSEDLPTTPG--GRGAGSSMPTRSK 161
              E+F IP+P     P+ ED+P+TP      AGSS P++ +
Sbjct: 257 --LEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKR 294

[Close]

BLAST of CcUC04G060630.1 vs. ExPASy TrEMBL
Match: A0A5D3BC95 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00380 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.0e-29
Identity = 70/162 (43.21%), Postives = 102/162 (62.96%), Query Frame = 0


Query: 1   MMQQKFPGCSIQVNPNLESRFRTSKRQYNVIAEMLGPGCSGFSWNTEQKCIDCEPEIFDV 60
           +M++K P  +IQV  NLESR +  K+QY  IA+M+GP CS F WN E+KCI+ E  +FD 
Sbjct: 52  LMKEKIPRSNIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDD 111

Query: 61  WVKSHPSAKGLRHKSFSFYDDLAIVYGKDKATGSCATTTAEVGFEPVVEEENEDILNNQS 120
           WVK HP+A+GL +K F+++ DL IV+G+DKATG       E+  +   + E +D+  N  
Sbjct: 112 WVKGHPNARGLLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTEEDDMDIN-- 171

Query: 121 PYFENFYIPDPPFASSPTSEDLPTT--PGGRGAGSSMPTRSK 161
              E+F IP+P     P+ ED+P+T       AGSS P++ +
Sbjct: 172 --LEDFDIPNPHGLEPPSGEDMPSTLISMTHDAGSSRPSKKR 209

[Close]

BLAST of CcUC04G060630.1 vs. ExPASy TrEMBL
Match: A0A1S3C252 (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.0e-29
Identity = 70/162 (43.21%), Postives = 102/162 (62.96%), Query Frame = 0


Query: 1   MMQQKFPGCSIQVNPNLESRFRTSKRQYNVIAEMLGPGCSGFSWNTEQKCIDCEPEIFDV 60
           +M++K P  +IQV  NLESR +  K+QY  IA+M+GP CS F WN E+KCI+ E  +FD 
Sbjct: 84  LMKEKIPRSNIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDD 143

Query: 61  WVKSHPSAKGLRHKSFSFYDDLAIVYGKDKATGSCATTTAEVGFEPVVEEENEDILNNQS 120
           WVK HP+A+GL +K F+++ DL IV+G+DKATG       E+  +   + E +D+  N  
Sbjct: 144 WVKGHPNARGLLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTEEDDMDIN-- 203

Query: 121 PYFENFYIPDPPFASSPTSEDLPTT--PGGRGAGSSMPTRSK 161
              E+F IP+P     P+ ED+P+T       AGSS P++ +
Sbjct: 204 --LEDFDIPNPHGLEPPSGEDMPSTLISMTHDAGSSRPSKKR 241

[Close]

BLAST of CcUC04G060630.1 vs. ExPASy TrEMBL
Match: A0A6V7NF77 (Myb_DNA-bind_3 domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS368 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.2e-29
Identity = 63/127 (49.61%), Postives = 86/127 (67.72%), Query Frame = 0


Query: 2   MQQKFPGCSIQVNPNLESRFRTSKRQYNVIAEMLGPGCSGFSWNTEQKCIDCEPEIFDVW 61
           M ++ PGC ++  P++ESRF+  KRQYN I+EMLGP  SGF WN  +KCI CE  +FD W
Sbjct: 61  MYERLPGCQLKGVPHIESRFKLWKRQYNTISEMLGPAASGFGWNDAEKCIICEKTVFDAW 120

Query: 62  VKSHPSAKGLRHKSFSFYDDLAIVYGKDKATGSCATTTAEVGFEPVVEEENEDILNNQSP 121
           VKSHP+A GLR KSF + + L++V+GKD+ATG+ A + A+     V EEE     + Q P
Sbjct: 121 VKSHPTAAGLRGKSFPYLEQLSVVFGKDRATGTGAESAADAA-RNVEEEELRTHASTQDP 180

Query: 122 YFENFYI 129
             E F++
Sbjct: 181 DVEMFFM 186

[Close]

BLAST of CcUC04G060630.1 vs. ExPASy TrEMBL
Match: A0A5A7SW62 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00210 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 4.9e-29
Identity = 69/162 (42.59%), Postives = 102/162 (62.96%), Query Frame = 0


Query: 1   MMQQKFPGCSIQVNPNLESRFRTSKRQYNVIAEMLGPGCSGFSWNTEQKCIDCEPEIFDV 60
           +M++K    +IQV PNLES  +  K+QY  IAEM+GP CSGFSWN E+KCI+ E  + + 
Sbjct: 137 LMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSND 196

Query: 61  WVKSHPSAKGLRHKSFSFYDDLAIVYGKDKATGSCATTTAEVGFEPVVEEENEDILNNQS 120
           WVK H +A+ L +K F ++ DL IV+G+D+ATG    T  E+G +   + E +D++ N  
Sbjct: 197 WVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGSQTARDTEEDDMIIN-- 256

Query: 121 PYFENFYIPDPPFASSPTSEDLPTTPG--GRGAGSSMPTRSK 161
              E+F IP+P     P+ ED+P+TP      AGS  P++ +
Sbjct: 257 --LEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSFRPSKKR 294

[Close]

BLAST of CcUC04G060630.1 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 53.9 bits (128), Expect = 1.4e-07
Identity = 44/153 (28.76%), Postives = 66/153 (43.14%), Query Frame = 0


Query: 19  SRFRTSKRQYNVIAEMLGPGCSGFSWNTEQKCIDCEPEIFDVWVKSHPSAKGLRHKSFSF 78
           SR +  K QY    + L    SGF W+   K      E++  ++K+HP+ K LR+ +F F
Sbjct: 72  SRMKYLKIQYQSCLD-LQRFSSGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEF 131

Query: 79  YDDLAIVYGKDKATGSCATTTAEVGFEPVVEEENEDILNNQSPYFENFYIPD-------- 138
           +D+L I++G+  ATG  A    +   + +     E+        F+N Y  D        
Sbjct: 132 FDELQIIFGEGVATGKNAIGLCD-STDGLTYRAGENPRKEYVDDFDNVYEYDTTTHHESS 191

Query: 139 ---PPFASSPTSEDLPTTPGGRGAGSSMPTRSK 161
               PF S  TSE  P  P  +   S   T  K
Sbjct: 192 EHYAPFMSHGTSES-PKLPPRKRTRSERSTSQK 221

[Close]

BLAST of CcUC04G060630.1 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 6.9e-07
Identity = 43/149 (28.86%), Postives = 71/149 (47.65%), Query Frame = 0


Query: 8   GCSIQVNPNLESRFRTSKRQYNVIAEMLGPGCSGFSWNTEQKCIDCEPEIFDVWVKSHPS 67
           GC+ + + N  SR +  K  Y    + L    SGF W+ E K      E++  ++K+HP+
Sbjct: 58  GCN-KNHKNYMSRLKFLKNLYQSYLD-LKRFSSGFGWDPETKKFTAPDEVWRDYLKAHPN 117

Query: 68  AKGLRHKSFSFYDDLAIVYGKDKATGSCATTTAE--------VGFEPVVEEENEDILNNQ 127
            K ++ +S   ++DL I++G   ATGS A   ++        VG     +E      N +
Sbjct: 118 HKHMQTESIDHFEDLQIIFGDVVATGSFAVGMSDSTCPRIYTVGERSQGKETVNQDENIE 177

Query: 128 SPYFENFYIP-DPPFASSPTSEDLPTTPG 148
             Y  +F  P    +++SP + D PTT G
Sbjct: 178 EVYEFSFQHPSSAEYSTSPFTFD-PTTRG 203

[Close]

BLAST of CcUC04G060630.1 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 9.0e-07
Identity = 25/104 (24.04%), Postives = 54/104 (51.92%), Query Frame = 0


Query: 17  LESRFRTSKRQYNVIAEMLGPGCSGFSWNTEQKCIDCEPEIFDVWVKSHPSAKGLRHKSF 76
           L+SR+    +QYN +  +L  G  GF W+   + +  +  ++ +++K+HP A+  + K  
Sbjct: 66  LKSRYTNLWKQYNDVKCLLDHG--GFVWDQTHQTVIGDDSLWSLYLKAHPEARVYKTKPV 125

Query: 77  SFYDDLAIVYGKDKATGSCATTTAEVGFEPVVEEENEDILNNQS 121
             + DL ++YG   A G  + ++ ++  E  +  E+  +   +S
Sbjct: 126 LNFSDLCLIYGYTVADGRYSMSSHDLEIEDEINGESVVLSGKES 167

[Close]

BLAST of CcUC04G060630.1 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 9.0e-07
Identity = 25/104 (24.04%), Postives = 54/104 (51.92%), Query Frame = 0


Query: 17  LESRFRTSKRQYNVIAEMLGPGCSGFSWNTEQKCIDCEPEIFDVWVKSHPSAKGLRHKSF 76
           L+SR+    +QYN +  +L  G  GF W+   + +  +  ++ +++K+HP A+  + K  
Sbjct: 66  LKSRYTNLWKQYNDVKCLLDHG--GFVWDQTHQTVIGDDSLWSLYLKAHPEARVYKTKPV 125

Query: 77  SFYDDLAIVYGKDKATGSCATTTAEVGFEPVVEEENEDILNNQS 121
             + DL ++YG   A G  + ++ ++  E  +  E+  +   +S
Sbjct: 126 LNFSDLCLIYGYTVADGRYSMSSHDLEIEDEINGESVVLSGKES 167

[Close]

BLAST of CcUC04G060630.1 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 7.6e-06
Identity = 22/96 (22.92%), Postives = 50/96 (52.08%), Query Frame = 0


Query: 17  LESRFRTSKRQYNVIAEMLGPGCSGFSWNTEQKCIDCEPEIFDVWVKSHPSAKGLRHKSF 76
           L++R +T +  +  +  +L     GFSW+  ++ +  +  ++D ++K HP ++  R KS 
Sbjct: 66  LKNRHKTLRNLFKSVNNLLIE--DGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSI 125

Query: 77  SFYDDLAIVYGKDKATGSCATTTAEVGFEPVVEEEN 113
             Y DL +VY    +      + +E   + +++E++
Sbjct: 126 PCYKDLCLVYSDGMSEHKAEESISEGESKTLIQEDD 159

The following BLAST results are available for this feature:

BLAST of CcUC04G060630.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ96933.1	2.1e-29	43.21	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_008455678.1	2.1e-29	43.21	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
TYK26842.1	2.1e-29	43.21	uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]	[more]
CAD1817157.1	4.6e-29	49.61	unnamed protein product [Ananas comosus var. bracteatus]	[more]
KAA0033487.1	1.0e-28	42.59	uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]	[more]

BLAST of CcUC04G060630.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC04G060630.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DTL0	1.0e-29	43.21	Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3BC95	1.0e-29	43.21	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C252	1.0e-29	43.21	uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 P...	[more]
A0A6V7NF77	2.2e-29	49.61	Myb_DNA-bind_3 domain-containing protein OS=Ananas comosus var. bracteatus OX=29...	[more]
A0A5A7SW62	4.9e-29	42.59	Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of CcUC04G060630.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27260.1	1.4e-07	28.76	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G30140.1	6.9e-07	28.86	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G24960.1	9.0e-07	24.04	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G24960.2	9.0e-07	24.04	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G02210.1	7.6e-06	22.92	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..162
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 1..119

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC04G060630	CcUC04G060630	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC04G060630.1-exon	CcUC04G060630.1-exon-CicolChr04:5312308..5312496	exon
CcUC04G060630.1-exon	CcUC04G060630.1-exon-CicolChr04:5312578..5312877	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC04G060630.1-cds	CcUC04G060630.1-cds-CicolChr04:5312308..5312496	CDS
CcUC04G060630.1-cds	CcUC04G060630.1-cds-CicolChr04:5312578..5312877	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC04G060630.1	CcUC04G060630.1-protein	polypeptide