Sed0002739 (gene) Chayote v1

Overview


Name	Sed0002739
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Poly [ADP-ribose] polymerase
Location	LG01: 58200234 .. 58202078 (+)
RNA-Seq Expression	Sed0002739
Synteny	Sed0002739

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGCATGAATATGAAGAGTTCTGTAAGGCTAGAAAAGAGAGTCTCTCCATTGATCAAATGAATGACCAAGACACAACTGGCCATCACTATGAAGTTGCTTCTAAATGGTATAACCAATAATACCGATCGACGACGCGCATCCTAGCTTTTTTCTTTTTCATTCATGTATCTCAAGACTCTTCTAAATGGTAAACTTGCTAGGTTACTTTTTCTTTTTGAAACAAGGATAACCACGTTAGTCTCTAGGCAGACACCGGGAGACATCGAAGAAGTAATGTCACAGGTGAGTCTCGAACCTGAGATCTTGAAAGGAGCATGCCTTCAAAACCCAAGTCTCTTCAACCACTGTGTCACCCTTGGGGATGCTATGTTACTCTTTTTGTAATCTATCCTAAAATAAATGAATGCCTTTTTGATGTATCTTGAATTGATATTTGACTTCATTGAATACAACTCTATTTTTGAAAGATGCTAAGTTTGTAGTGAAAAATTGGTATTCGATGGGAAACGGATTTTTGGTCTAAACAAAAGATCCATCTGGACAAAACGAAACCAGCAAGTTATCAAAATCAGTCTTGAATTCTCCCATCTCAGATGTAACCCTCCATTTTCTCCACTTTTTTCTTCTTTTCCTACGTAGAGAATATCATCATACCAACAGTTTTTTTCAGTTAACTCTGCTTCTTTATGATGTAGTTGATAAAAGAGTATCAAAATCCAAGTCAACGCCCTAATAGAAATATTGGCCAGTCAGATAAACCCGCCTTCTCCAGAATCTCTGTCCGTCCTTCAAGAACACAAGTTCATTGGTTGAGATCGTGCTTTTATGGCACAAGTTTTTATTGTGTTTATTTCACAAGTTTCCAATGATTATTAACCCAGTAATACAGGAGAAAAAAAATTCAGAAACATGGAGCTAATTCTGTTATTGATACATTCTCTTTCTTCTCATCCAGTGTTCTTAACTTTATCCTGACCAAGTGCTCAAACTCGACCTTCAAGATTTTGAAAGGTTATGAGTTTAATTTATTGTGGTTGTCTACTTAAAAATTACTTTTTTACAAATTTCTTTATGTCTAAATATTGCAGCATCAGTTGTGCTTTGCTTAGTTGTCTCGCCTGCCGAGAGAGAACGTGGTGGATCTTCCAAAGTTGAAGTAGTATGAGTTTCTTCCTTTCTAACCAAGATAAATGTAGTTCAGTTCAAGAGCTGTTTGGTTTTCAAAATTCCATACCATGAATGCTTATCTTTTTTAGTGAAAGAGGAATACAGGTCATATGAGAAGCTTAGCTGCTCGACAGCATTGAGAAGCAAGAATCTCAGCCATTGGTAGCTTATGATGTAGTTAACAGATCTACAGGATCCCTAGGGACAAACAAGATCCATCTGAGGGGTTTGCCAAGGATTCTGATGATTATAAAAGTGATTGTATTCAGCAAACCTACGAGCCTGTAAAAGTTAGAGACATTGTATTCGATTACATACTCGAAGCATTATTGTTGAAGTTTGTCGTTCGAACTGTGTGTTTTCCAGGAATATGGAGCGAGTGTTGATAACATTATGCTACCAAATTTCTAACTTTCTTCACAGGCACTCGAAGCTCGAATCTGTTGAGGCACTTGTACAAAGGGTTCTTGCCAGCAATAATATACTCTAGTCCAGTCCCGGGTTACATGGTACTCAACAATTGTAATATTTTCTTTTAGACATCGAGATGAACCTGAATGCAGATTCTTGATTTTTCTTTGCAGTTTGGTCGAGCCATTGTGTGCACTGATGATGCAGCAGAGGCAGCTAGTTATGGTTTTACTAGCGTAGCAGGCCAGAAGGATTTTTAG

mRNA sequence

ATGGCAAAGCATGAATATGAAGAGTTCTGTAAGGCTAGAAAAGAGAGTCTCTCCATTGATCAAATGAATGACCAAGACACAACTGGCCATCACTATGAAGTTGCTTCTAAATGGATCCCTAGGGACAAACAAGATCCATCTGAGGGGTTTGCCAAGGATTCTGATGATTATAAAAGTGATTGTATTCAGCAAACCTACGAGCCTGTAAAAGTTAGAGACATTGTATTCGATTACATACTCGAAGCATTATTGTTGAAGTTTGTCGTTCGAACTTTTGGTCGAGCCATTGTGTGCACTGATGATGCAGCAGAGGCAGCTAGTTATGGTTTTACTAGCGTAGCAGGCCAGAAGGATTTTTAG

Coding sequence (CDS)

ATGGCAAAGCATGAATATGAAGAGTTCTGTAAGGCTAGAAAAGAGAGTCTCTCCATTGATCAAATGAATGACCAAGACACAACTGGCCATCACTATGAAGTTGCTTCTAAATGGATCCCTAGGGACAAACAAGATCCATCTGAGGGGTTTGCCAAGGATTCTGATGATTATAAAAGTGATTGTATTCAGCAAACCTACGAGCCTGTAAAAGTTAGAGACATTGTATTCGATTACATACTCGAAGCATTATTGTTGAAGTTTGTCGTTCGAACTTTTGGTCGAGCCATTGTGTGCACTGATGATGCAGCAGAGGCAGCTAGTTATGGTTTTACTAGCGTAGCAGGCCAGAAGGATTTTTAG

Protein sequence

MAKHEYEEFCKARKESLSIDQMNDQDTTGHHYEVASKWIPRDKQDPSEGFAKDSDDYKSDCIQQTYEPVKVRDIVFDYILEALLLKFVVRTFGRAIVCTDDAAEAASYGFTSVAGQKDF

Homology

[Close]

BLAST of Sed0002739 vs. NCBI nr
Match: KAF6172097.1 (hypothetical protein GIB67_029515 [Kingdonia uniflora])

HSP 1 Score: 54.7 bits (130), Expect = 6.4e-04
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 34  VASKWIPRDKQDPSEGFAKDSDDYKS--DCIQQTYEPVKVRDIVFDYILEALL------- 93
           ++SK I      P     K+ +DYK     +++TY+P+KV DI +   +E +        
Sbjct: 295 LSSKKIYEKLGCPVSPLEKEPEDYKMILKYLEKTYKPIKVEDISYGVTVENIFAVEPSAC 354

Query: 94  -----LKFVVRTFGRAIVCTDDAAEAASYGFTSV 114
                +K ++  FG+A+VCTD AAEAA YGFT+V
Sbjct: 355 PSLDDMKKLLNQFGKAVVCTDAAAEAAVYGFTAV 388

[Close]

BLAST of Sed0002739 vs. ExPASy TrEMBL
Match: A0A7J7NY45 (Poly [ADP-ribose] polymerase OS=Kingdonia uniflora OX=39325 GN=GIB67_029515 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.1e-04
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 34  VASKWIPRDKQDPSEGFAKDSDDYKS--DCIQQTYEPVKVRDIVFDYILEALL------- 93
           ++SK I      P     K+ +DYK     +++TY+P+KV DI +   +E +        
Sbjct: 295 LSSKKIYEKLGCPVSPLEKEPEDYKMILKYLEKTYKPIKVEDISYGVTVENIFAVEPSAC 354

Query: 94  -----LKFVVRTFGRAIVCTDDAAEAASYGFTSV 114
                +K ++  FG+A+VCTD AAEAA YGFT+V
Sbjct: 355 PSLDDMKKLLNQFGKAVVCTDAAAEAAVYGFTAV 388

The following BLAST results are available for this feature:

BLAST of Sed0002739 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF6172097.1	6.4e-04	36.17	hypothetical protein GIB67_029515 [Kingdonia uniflora]	[more]

BLAST of Sed0002739 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0002739 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J7NY45	3.1e-04	36.17	Poly [ADP-ribose] polymerase OS=Kingdonia uniflora OX=39325 GN=GIB67_029515 PE=4...	[more]

BLAST of Sed0002739 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002739.1	Sed0002739.1	mRNA