CcUC07G143310.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC07G143310.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Ciliary neurotrophic factor
Location	CicolChr07: 29474943 .. 29482021 (-)
Sequence length	1399
RNA-Seq Expression	CcUC07G143310.1
Synteny	CcUC07G143310.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGCCAACGAGTGAGAAAAAAAGAAGGCAAAGCAAAGAAAGTTGAGGAAGAAAAGAATGGCGGATTGGGGCCCAGTTTTCGTGGCTGTGGTTCTGTTCCTTCTTCTATCACCAGGTCTTCTCTTTCAGGTCCCTGCCCACCACCAATTTCTTCAGTTCGGTAACTTCCAAACCAGCGGCGCCTCCATTTTCATCCATTCCCTCATCTTCTTTGCCCTAATTTCCCTCTTCACCTTCGTCATTCAACTTCACATCTACATCTGATTAATTTCCCCTAATCCCTAATCCCTAATCCCAATCGCGCCCAGTTTCCTCATCCATTTCCAATTTCCAGGTACATACACACTCTGTTTCTTCCTTTCATTTCGCTTCTGCCTCTCTGTTTCCGCCTCCTCTGTCTCTATAATCTCCGGATCCATCTTCGTTTCTATCGGCCAGCCTTGTACATTCATGGTGCCTTTTGTTTTAGGGATTTCGGTGAAGCATATATTTATATGTTGTAATATTTTCGTCATATAATTTTTGAGTTTGAAATTGTTGAAGTTGTGAACGATCATATGGAATTCAAACAAATATGTAATTTTCTTTTTTAGTGTTCATGTCTGATTTAATTAGATAAGAAGTTTTTTTAAGGTCAAGTGATAGTAAGCATATAGGTCAAATTATTGTTATATTATTTCATGTGGGTCATGTTATTTATTATACATTTATTAGTACTTTAAAGTGGGTGGAAATATTATCAAATGTCCCAATTCACGGTATTAAATTCAGAAAACATAAAGAATAAACCTACTAATTTAAATATAATATAAATAAATTAAACCACGATATTTATATCATTTTATAATAAATTGGTGTCCCAATCTGTACCTGATTCAAATAGTTATGAATTACTCTAAATATTGGATTAGAAGGAATATCACCCAATTTTTGTAATGGACCATACAAAATTAATTTAACTTGGTAAACTTTAAAGTAGTATATTCAATCATTAATTTTGAAAATTTCAAAATCTATTTCATTCATATTATTATTTATTTATTATTATTATTATTATTTTATCTCACTACTAATTCAACGTACAAATCTAGGGTCCTATCAATCTCCCTTGGAGAGGGAATTAAGAATTGAACTTGTTAAACTCGAGGAAAAGAAGTAGTTAATTGATGTTTTTAAAATTTAACTCGAAATTTTCAAGCAGTGAGACAATCATATTAATATCTCAATTTTTTTTTTTTTTCAGTATATTCAAATCTTGAATTTTTAGTAGATGTAGTAACCAACTAACTTGAGTATTTGAGTATATTGCAACTTTAACCTATAAGATACTATATATATATATATTTGTTCTTAAGGGGTTGTTTGTTTTTTAGAAATGCAGATAACTGAAATAATTAGATGTCTAGAATTACATATGTTGGACATACTTAGATAACCATGTTTGTGTTGTAAGAATGTTGTTTGAAGATATATAAAAATACTTGTGTTGTAAGAATGTTGTTTGAAGATATATAAAAATACTTGAATAATTTCACTTGTTTTGTAAATTTAGATTATATTGTTGAATTCATATAACATATTCGTTTTTTCTTATTTGAATTTCTTTTTAAGTTAATATAGTCTATTATTTTATTTGACCATATTTATTATAATTATAAATTAAAATAAAGAATAATGATATTTATATATATATATCAACAAGAGTTAAAAAGGTAAAAAGAGGATATCCTCAACACGAGAATCATAAAACTTGTATTTCAGGAAGGTATCCAAAACTCTCAAGATACTTTTCATAAAGGCATCTTAGGATGTTTAAGAATCTCTAAATGTTCAAACATCTTACATTACCACAAAACAAATGTGGTAATTCAGATATCCACTCTTTAAAAAAATTGGATCCCAACTAAACAAATGACTAAATTCCACATAGCTAGAACAAAAATATAATTTTTAAAAGAGAGAAAAAGAAAAGGGAAAGTGAGTTAAATTCTAGCCTAGGTAGTGGGTTTTGGTGATGCAAGTAACTTTAATAAACCCCCAACTCTTACCAGATTCATTGACAGGCCAACTAATGTTGGATAATTTTAATTATTGAGGTTCTTTATTATGTAATTGGAATGATTTAATCTTTTTTTTTTTATATATATTTAATAAAAAGCATTATTAAATTTTATTTTTGATAACTTTCTCGGTTAAAAAGTATCTAGCAAATTTTTAAATTTTTAAATAGTGTCAAGTAATTTCTCAAACTCGATTAAATTCTTTTACCTATTTGATATAGATTTGTTTAATTCATGAACGTATTAGACACTTTTTTAATTTCTGTTTAATACACATTTTTAATTTAAGAATTTCCTAGAGAGTGGAAAGCTTGAAGGTCTCTATCTCCTAATAAAAATTTTGTACTAAACTTTGGGAGATTGAGACGAAGAGGATGGAGCTGTTGATGATAAAATGTTTATTAATCCAATAAAATTAAAAGAAGTTTCAACAAGATTAAAATTAGTTCCTCCCAAATTTCTTATATATACACATAAAAGAAAAAAAAAAAGTTAGATAATTGTTACTTATATAGTAATTATTACTTATATAGTTATTACAAGTATGAAGATAAAATAGGGGGAAAAAAAAAAAAGACCAAATAAAGATTACGATAAAAAGGAAAGATACAAAAGTAGGGAAGAATACGTCAAATCCACCGACTCATCATTATGACAAATAAAAAGGTTATCAAACTTTATAAAAGCAAAAAAAAAAAAAAAGGGAAGGAAAAAGAGGAGAAAAAAAAAAAAAACTCTGTCTTTACTTTTTTAATTTCATTTTTCATTTTCTTAAACAAAAGAGGAAAGAAAATAATTTGGCTAAACTCGCAATTTTCACCAAATTACACTTCTTAGATAAGGGTCGCAATCTTTTTTCTTTTTTTAAAAAAAAAAGGAAAAAAAGAGTTTTTTTTTTTTTTCTCCTCTTTTTCCTTCCCTTTTTTTTTTTTTTAAAATTTTTTAACTTTTTTTTTTTCTTTTTTTTTTTTATATTTATATATTATTTTTTTTGTTTTTTTTTTCTTTTTTTTTTTTAATACTTATTCAAATATATGTATAATATTAAGCTGAGAAAATTTTAGTGAAAAATTGCATTAGAGCCGCATGTTGGATAATTATTTTAAATAGTAAATGGTAAAAATATTTTTAAAATATAGCAAAATGTCACATTCTATTAGTTATAGATATTGATAGACATTGACTAGTAGACAGTAATATTTTTTTTTATATTTGTAAATAGTTTTGTTCGTTTTGCTATAATTAAAAAGACCCATTTAAGAATTATAACAAAAGTATTCTATAATTAATTAGAAAAATGTTGATTTATATCCTAAACTTTAGGTGTTGTGTTAATTTAAATCCTGAACTAATGATGGCAATAATTTACACATTTCATTATGTGGAAAATCTCACATGAAACTTATAATGGTATCATTTAAACCCCCAAATTTTCATTAATGAATCAATTTAGAAGATTTGTCATAATTTCTTTGAGAATCGTCCATTTTGTAAATTCAATATTTGAAAAAGTTTACACACGTTTAAGAATCAATACATTGATGATTTTAAAAAGGGGTGGTTGCAAATATAGCTATTAGGTCCAAAACATTTGTAGATATAGTACAATGAAAAGTGATTCACAATATAACAAAATTTAGATTATATTTTTGAAGTCTATCAATGATAGGTCATATCAATAGTAAGTGTTTATTAGTGATAAACCATATCGTTGATAGGATTACATTTTGCTATATTTGTAATTTTTTAAAAAATATTGCTATACACCTCCTAAGAGTACTACCCAACACAATTACTATTTAAAAAATAATCATAATAAAAAATCTAAATATTGACGTAACCAATTTGTAAACATCTATTTTTGTACAAATCTTTATTTTACTTCCCCAACTTTTTTGTTAAAATCCGTAGATATTTAAACGAGAATTGAATACTTGTTTGAAAAGAGGACGGAATGAATGACAACAGACCATTTGAAAGACAACACGTATCAAAGAGCAATTGGAGAATGTTCATAAGAAGTGGTATGATTTGATTTGTTGCCGAGAAGAAAAAAAAAAAAAAAAGGGATGGCAGAGGCGGCGGAGGAGATGGAGCTCATCAGCCTTGCGATTCGAAGACTGATGGAGGAGAACGACAAAAGAACCGCGTCTCATCAGAGCTCCGACGCCGATGCCGACGATGACGATCTGCAACTTCTTTCCCGATTACTCTCTCAGGTTAGATTACGTTAAATGACTTCATGATTAGATTTTGAATATTAAATATCTTTCGATTTGTTTTATTTACAATTAAGATTCTTATGTTTTGTGATGGTAATTTCTTTTATAATTATTCAATAAAAGAAATTGGGAGAGTCGAATTGATCTGGAGAGTTCAAGTTTATTGTTTTCGATTGTGCTTCAAGGTTTTGAATAATGTTTACGTACCGAAATATCGATATTTCTGGAAAAAGAAAACTATATGTTTTAAATTTAATGAATTTTTTTTTGTTATATTTCATCGGTTTTCTTTTTAAGATATAAAAAACAATGTTGATTCAACTGTTAAGCCCGTATAGCCATGTGAAAGGTATTTAATAAGTCTGCCGATTTAAAACTTTGATAAATACAATAGGTTTTTAAATTTAGATTTTAAATCTTAAAATGTAAAATTATATTATAAAAATATATTAGGACATTGACTAAACTCAACTTATTTTTGGTTAAATTTAAATATGTTTATAATATTATAAGTGCAACTTGTTTTGGTTAATATAAAATTGGAAATCTTGAAGTATTCTTTAAAAAGATCAACTTATTAAGTTTATTAAATTTTGTTTGATAACCAGTTCAGTTTTTGTTTTTAGTTTTAGAAAATTAAGTTTGTCTCATCTCCATTTCTTACAACGATTTATATCTTACTTAAATATAATGGTTGAATTTTTAGCCAAATTTTAAAAACAAAAATAACTCTTTAATGGTTACTTTTTTTTTAGTTTTCAAAATTTAACTTGATTTTTTAAACAGTTGATAAAAACTAAACAACAAAGAAAGAAATTTAGAGGTGGAAGTAGTGTCATAAGCTTAATTTTAAAAAACAAAAGACAAAAAACGAAATGGTACCAAATCAATATCTTAAAAAACTACTTCTGAAAATAGTAAAATTTCTCATTTAATTTTTCATAGGATTAATTCAAGAGTCGGGACAGTTTGAATTTAAAAAGAAATCTCTTTTTACAGATTTAAATACCAACCAAATTATTTATATATATATATATTAATTATCTTAACCATTAAAATGATTACCTTTAGTCCCGTCCTTCCTCATTAGGGGCGAATCTCCACTGGGCCTTGTCCGGGAATGGGGAAAATTTTCATTCCCCCATATAGTTTTATTTTCATTTTTTATTTAATATATACATAATTAAATCACATTTTGTTGTGTTTCATTTATAGTGGACATTTATCTTTCTTAAACCATAATTTAATTGTAAAGAGATCGATGGAGAGTCCCCCATTCCTACGAGAGTTGCTTATGGAGGAGACCAAAAAACCATCCTGTCTCACCCTACTCCGTCACATCTAAACTAAAAAAAATACCGTTTTCATAAATTAATTTTCTTTTTTAAAATTAAAAATGCAAGTGTTTTTTTTTTTTTTTCCCTTAAAAGAAGAAAAATATAGACATAACAACATAAATGAGAACTGACAAATGAAATCATTATAACCTAAGAAAATCTCTCCTCTCTTTTCTTACCTTTCCTTCTCTACCATTTCTGTAACAATCATTTCTTTCCTACCTTTATCCATTTGTTTTTCTAAATACCCATTTAACCTAATTTTTTAAAACAACTTATATCTTGAATCACTAATGGGGGACATGGAAATAAGAGGAAAAACACAATTTTTAAGACCATCATTTAATTATTGATTTTTAATTTATAAAAATTAAACTATGAACACTTATTTTCACATTCCTGAAAAAAATAATAATAATAGTAAATAAATAAAAAGAAGAAAACAACGTAGTAGTTCTTAAAAACTTGAGCTTGAAGAAAGATACAAACCCTTATAAGAAATTGTGAAAAAACTGAAAAACCGAAAGTTACTTGGTTTTTCTTTATAACATGAAGCAAGAGAGCCAAAGAGATAAGGAGATAGAGAATATGAAAAGTTTATTTTAATCTTCTGGCTTGCAGCCAAATAGCCAAAATCCTTTACTTCATTTTCGAATCAAGTAATTTAGTCCCACAAGTGATTAGCCTTCACTGCATTTAACAGGTGGAATCAATAAGAGAAGAACAGAGGCTTAAACACTCTCAAATCTCAACTCAGCAAGAGTATGAGAAAATAATTGAGACAGACTTAGAGCCTCAAAGTGAAAATATGGAAAGAAGTGGAAGCAGAGTGAAAACAGAGAAGGAGATAGTGAAAGAGCTAAAAGAAGTGAAGAGGCAGAATTTCATAACTCACTGCCTTGTTTCAGCAATGATTATCCTCACTGTTGCTTGGCAAATCTCTGAGGTATCTTTGATTTTGAAACTCAGAGATGGTTTGAGCAATCCATTCAAATCCCTGGGTAGAATTCTGAAAAGGAAGACAACTTCAGCAATACAACAACAGATTGAAGCTACTGAATTGCCTCATCTTAATATGCCTGCCCTACCTCATGTGAACCTACCAGAGTTTGACTTGGATGGAAAATAATACCTGATCTACAAGGCCACCAATCAATGATAGCTTCATCAAGATCACCCAAGTTGTTTCATTGGATGTGCAGCTCTTTGATTTAATTTTCTAGGCACAACCAAACATTTCAACAACTTTGTAGATCTACGTATTAGTTGTTTAAAGGAAAAGATGACAATGAAACCCTGTATTTTTTGGGCACAGCGCATTGTGTGTCGTTACTGCTTTCATTTTGGACATTCATATTTCAATTTCCATGCTGTAGAAGTTTAAAGCTGTGATTTTCGAATGGTATAATAGCATATAGTGCACTCGCATTTGGATAGAATGCAGGGAGTACTGAGCAAATC

mRNA sequence

AGGCCAACGAGTGAGAAAAAAAGAAGGCAAAGCAAAGAAAGTTGAGGAAGAAAAGAATGGCGGATTGGGGCCCAGTTTTCGTGGCTGTGGTTCTGTTCCTTCTTCTATCACCAGGTCTTCTCTTTCAGGTCCCTGCCCACCACCAATTTCTTCAGTTCGGTAACTTCCAAACCAGCGGCGCCTCCATTTTCATCCATTCCCTCATCTTCTTTGCCCTAATTTCCCTCTTCACCTTCGTCATTCAACTTCACATCTACATCTGATTAATTTCCCCTAATCCCTAATCCCTAATCCCAATCGCGCCCAGTTTCCTCATCCATTTCCAATTTCCAGATATTTAAACGAGAATTGAATACTTGTTTGAAAAGAGGACGGAATGAATGACAACAGACCATTTGAAAGACAACACGTATCAAAGAGCAATTGGAGAATGTTCATAAGAAGTGGTATGATTTGATTTGTTGCCGAGAAGAAAAAAAAAAAAAAAAGGGATGGCAGAGGCGGCGGAGGAGATGGAGCTCATCAGCCTTGCGATTCGAAGACTGATGGAGGAGAACGACAAAAGAACCGCGTCTCATCAGAGCTCCGACGCCGATGCCGACGATGACGATCTGCAACTTCTTTCCCGATTACTCTCTCAGGTGGAATCAATAAGAGAAGAACAGAGGCTTAAACACTCTCAAATCTCAACTCAGCAAGAGTATGAGAAAATAATTGAGACAGACTTAGAGCCTCAAAGTGAAAATATGGAAAGAAGTGGAAGCAGAGTGAAAACAGAGAAGGAGATAGTGAAAGAGCTAAAAGAAGTGAAGAGGCAGAATTTCATAACTCACTGCCTTGTTTCAGCAATGATTATCCTCACTGTTGCTTGGCAAATCTCTGAGGTATCTTTGATTTTGAAACTCAGAGATGGTTTGAGCAATCCATTCAAATCCCTGGGTAGAATTCTGAAAAGGAAGACAACTTCAGCAATACAACAACAGATTGAAGCTACTGAATTGCCTCATCTTAATATGCCTGCCCTACCTCATGTGAACCTACCAGAGTTTGACTTGGATGGAAAATAATACCTGATCTACAAGGCCACCAATCAATGATAGCTTCATCAAGATCACCCAAGTTGTTTCATTGGATGTGCAGCTCTTTGATTTAATTTTCTAGGCACAACCAAACATTTCAACAACTTTGTAGATCTACGTATTAGTTGTTTAAAGGAAAAGATGACAATGAAACCCTGTATTTTTTGGGCACAGCGCATTGTGTGTCGTTACTGCTTTCATTTTGGACATTCATATTTCAATTTCCATGCTGTAGAAGTTTAAAGCTGTGATTTTCGAATGGTATAATAGCATATAGTGCACTCGCATTTGGATAGAATGCAGGGAGTACTGAGCAAATC

Coding sequence (CDS)

ATGGCAGAGGCGGCGGAGGAGATGGAGCTCATCAGCCTTGCGATTCGAAGACTGATGGAGGAGAACGACAAAAGAACCGCGTCTCATCAGAGCTCCGACGCCGATGCCGACGATGACGATCTGCAACTTCTTTCCCGATTACTCTCTCAGGTGGAATCAATAAGAGAAGAACAGAGGCTTAAACACTCTCAAATCTCAACTCAGCAAGAGTATGAGAAAATAATTGAGACAGACTTAGAGCCTCAAAGTGAAAATATGGAAAGAAGTGGAAGCAGAGTGAAAACAGAGAAGGAGATAGTGAAAGAGCTAAAAGAAGTGAAGAGGCAGAATTTCATAACTCACTGCCTTGTTTCAGCAATGATTATCCTCACTGTTGCTTGGCAAATCTCTGAGGTATCTTTGATTTTGAAACTCAGAGATGGTTTGAGCAATCCATTCAAATCCCTGGGTAGAATTCTGAAAAGGAAGACAACTTCAGCAATACAACAACAGATTGAAGCTACTGAATTGCCTCATCTTAATATGCCTGCCCTACCTCATGTGAACCTACCAGAGTTTGACTTGGATGGAAAATAA

Protein sequence

MAEAAEEMELISLAIRRLMEENDKRTASHQSSDADADDDDLQLLSRLLSQVESIREEQRLKHSQISTQQEYEKIIETDLEPQSENMERSGSRVKTEKEIVKELKEVKRQNFITHCLVSAMIILTVAWQISEVSLILKLRDGLSNPFKSLGRILKRKTTSAIQQQIEATELPHLNMPALPHVNLPEFDLDGK

Homology

[Close]

BLAST of CcUC07G143310.1 vs. NCBI nr
Match: XP_038895500.1 (uncharacterized protein LOC120083719 [Benincasa hispida])

HSP 1 Score: 295.8 bits (756), Expect = 2.6e-76
Identity = 167/192 (86.98%), Postives = 176/192 (91.67%), Query Frame = 0


Query: 1   MAEAAEEMELISLAIRRLMEENDKRTASHQSSDADADDDDLQLLSRLLSQVESIREEQRL 60
           MAEA EEMELISLAIRRLMEE+D RTASH+SS ADA   DLQLLSRLLSQVES REEQRL
Sbjct: 1   MAEATEEMELISLAIRRLMEEDDNRTASHRSSGADA--HDLQLLSRLLSQVESTREEQRL 60

Query: 61  KHSQISTQQEYEKIIETDLEPQSENMERSG-SRVKTEKEIVKELKEVKRQNFITHCLVSA 120
            HSQIS QQ+ EKIIET+LEPQSEN+ERSG +RVK EK IVKELKEVKRQNFITHCLVSA
Sbjct: 61  NHSQISAQQKDEKIIETELEPQSENVERSGRNRVKIEKVIVKELKEVKRQNFITHCLVSA 120

Query: 121 MIILTVAWQISEVSLILKLRDGLSNPFKSLGRILKRKTTSAIQQQIEATELPHLNMPALP 180
           MIILTVAWQ+SEVS ILKLR+GLSNPFKSLG ILKRKTTSAIQ QIEATELPHLNMPALP
Sbjct: 121 MIILTVAWQVSEVSFILKLRNGLSNPFKSLGTILKRKTTSAIQHQIEATELPHLNMPALP 180

Query: 181 HVNLPEFDLDGK 192
           HVNLPEFDLDG+
Sbjct: 181 HVNLPEFDLDGR 190

[Close]

BLAST of CcUC07G143310.1 vs. NCBI nr
Match: XP_008454012.1 (PREDICTED: uncharacterized protein LOC103494562 [Cucumis melo])

HSP 1 Score: 244.2 bits (622), Expect = 9.1e-61
Identity = 144/188 (76.60%), Postives = 161/188 (85.64%), Query Frame = 0


Query: 4   AAEEMELISLAIRRLMEENDKRTASHQSSDADADDDDLQLLSRLLSQVESIREEQRLKHS 63
           A EEMELISLAIRRLMEEN  RT SH+SSD D D DD+QLLS+LLS+VES REEQRL H 
Sbjct: 5   AEEEMELISLAIRRLMEENRNRTTSHRSSDTDTDADDMQLLSQLLSEVESTREEQRLNH- 64

Query: 64  QISTQQEYEKIIETDLEPQSE-NMERSGSRVKTEKEIVKELKEVKRQNFITHCLVSAMII 123
              ++QE  +IIET+LE + E N+ERS  +VKTE EIVKELKEVK+QNF+THCLVSAMII
Sbjct: 65  --YSKQEDGEIIETNLEAEGENNVERSEIKVKTE-EIVKELKEVKKQNFVTHCLVSAMII 124

Query: 124 LTVAWQISEVSLILKLRDG-LSNPFKSLGRILKRKTTSAIQQQIEATELPHLNMPALPHV 183
           LTVAWQISEVS ILKLRDG LSNPFKSLG ILKRKTTSAIQ QIEATELP LN+PA+PHV
Sbjct: 125 LTVAWQISEVSFILKLRDGLLSNPFKSLGTILKRKTTSAIQHQIEATELPQLNIPAIPHV 184

Query: 184 NLPEFDLD 190
           +LP+FD D
Sbjct: 185 SLPDFDDD 188

[Close]

BLAST of CcUC07G143310.1 vs. NCBI nr
Match: XP_004152113.1 (uncharacterized protein LOC101214522 [Cucumis sativus])

HSP 1 Score: 241.1 bits (614), Expect = 7.7e-60
Identity = 150/192 (78.12%), Postives = 163/192 (84.90%), Query Frame = 0


Query: 1   MAEAAE-EMELISLAIRRLMEENDKRTASHQSS--DADADDDDLQLLSRLLSQVESIREE 60
           MAEAA  EMELISLAIRRLMEEN  RT SH+SS  DADAD DD+QLLSRLLS+VES R E
Sbjct: 1   MAEAAAVEMELISLAIRRLMEENRHRTNSHRSSDADADADADDMQLLSRLLSEVESTRGE 60

Query: 61  QRLKHSQISTQQEYEKIIETDLEPQSE-NMERSGSRVKTEKEIVKELKEVKRQNFITHCL 120
           QRL HS    +QE  +IIET+LE + E N+ERS  ++KTE EIVKELKEVK+QNFITHCL
Sbjct: 61  QRLNHS----KQEDGEIIETNLEAERENNVERSEMKLKTE-EIVKELKEVKKQNFITHCL 120

Query: 121 VSAMIILTVAWQISEVSLILKLRDG-LSNPFKSLGRILKRKTTSAIQQQIEATELPHLNM 180
           VSAMIILTVAWQISEVS ILKLRDG LSNPFKSL  ILKRKTTSAIQ QIEATELPHLN+
Sbjct: 121 VSAMIILTVAWQISEVSFILKLRDGLLSNPFKSLATILKRKTTSAIQHQIEATELPHLNI 180

Query: 181 PALPHVNLPEFD 188
           PALPHV LP+FD
Sbjct: 181 PALPHVTLPDFD 187

[Close]

BLAST of CcUC07G143310.1 vs. NCBI nr
Match: KAA0044571.1 (uncharacterized protein E6C27_scaffold46G003210 [Cucumis melo var. makuwa])

HSP 1 Score: 240.0 bits (611), Expect = 1.7e-59
Identity = 141/184 (76.63%), Postives = 158/184 (85.87%), Query Frame = 0


Query: 8   MELISLAIRRLMEENDKRTASHQSSDADADDDDLQLLSRLLSQVESIREEQRLKHSQIST 67
           MELISLAIRRLMEEN  RT SH+SSD D D DD+QLLS+LLS+VES REEQRL H    +
Sbjct: 1   MELISLAIRRLMEENRNRTTSHRSSDTDTDADDMQLLSQLLSEVESTREEQRLNH---YS 60

Query: 68  QQEYEKIIETDLEPQSE-NMERSGSRVKTEKEIVKELKEVKRQNFITHCLVSAMIILTVA 127
           +QE  +IIET+LE + E N+ERS  +VKTE EIVKELKEVK+QNF+THCLVSAMIILTVA
Sbjct: 61  KQEDGEIIETNLEAEGENNVERSEIKVKTE-EIVKELKEVKKQNFVTHCLVSAMIILTVA 120

Query: 128 WQISEVSLILKLRDG-LSNPFKSLGRILKRKTTSAIQQQIEATELPHLNMPALPHVNLPE 187
           WQISEVS ILKLRDG LSNPFKSLG ILKRKTTSAIQ QIEATELP LN+PA+PHV+LP+
Sbjct: 121 WQISEVSFILKLRDGLLSNPFKSLGTILKRKTTSAIQHQIEATELPQLNIPAIPHVSLPD 180

Query: 188 FDLD 190
           FD D
Sbjct: 181 FDDD 180

[Close]

BLAST of CcUC07G143310.1 vs. NCBI nr
Match: KAE8649098.1 (hypothetical protein Csa_015237 [Cucumis sativus])

HSP 1 Score: 236.9 bits (603), Expect = 1.5e-58
Identity = 144/184 (78.26%), Postives = 157/184 (85.33%), Query Frame = 0


Query: 8   MELISLAIRRLMEENDKRTASHQSS--DADADDDDLQLLSRLLSQVESIREEQRLKHSQI 67
           MELISLAIRRLMEEN  RT SH+SS  DADAD DD+QLLSRLLS+VES R EQRL HS  
Sbjct: 1   MELISLAIRRLMEENRHRTNSHRSSDADADADADDMQLLSRLLSEVESTRGEQRLNHS-- 60

Query: 68  STQQEYEKIIETDLEPQSE-NMERSGSRVKTEKEIVKELKEVKRQNFITHCLVSAMIILT 127
             +QE  +IIET+LE + E N+ERS  ++KTE EIVKELKEVK+QNFITHCLVSAMIILT
Sbjct: 61  --KQEDGEIIETNLEAERENNVERSEMKLKTE-EIVKELKEVKKQNFITHCLVSAMIILT 120

Query: 128 VAWQISEVSLILKLRDG-LSNPFKSLGRILKRKTTSAIQQQIEATELPHLNMPALPHVNL 187
           VAWQISEVS ILKLRDG LSNPFKSL  ILKRKTTSAIQ QIEATELPHLN+PALPHV L
Sbjct: 121 VAWQISEVSFILKLRDGLLSNPFKSLATILKRKTTSAIQHQIEATELPHLNIPALPHVTL 179

[Close]

BLAST of CcUC07G143310.1 vs. ExPASy TrEMBL
Match: A0A1S3BXR6 (uncharacterized protein LOC103494562 OS=Cucumis melo OX=3656 GN=LOC103494562 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 4.4e-61
Identity = 144/188 (76.60%), Postives = 161/188 (85.64%), Query Frame = 0


Query: 4   AAEEMELISLAIRRLMEENDKRTASHQSSDADADDDDLQLLSRLLSQVESIREEQRLKHS 63
           A EEMELISLAIRRLMEEN  RT SH+SSD D D DD+QLLS+LLS+VES REEQRL H 
Sbjct: 5   AEEEMELISLAIRRLMEENRNRTTSHRSSDTDTDADDMQLLSQLLSEVESTREEQRLNH- 64

Query: 64  QISTQQEYEKIIETDLEPQSE-NMERSGSRVKTEKEIVKELKEVKRQNFITHCLVSAMII 123
              ++QE  +IIET+LE + E N+ERS  +VKTE EIVKELKEVK+QNF+THCLVSAMII
Sbjct: 65  --YSKQEDGEIIETNLEAEGENNVERSEIKVKTE-EIVKELKEVKKQNFVTHCLVSAMII 124

Query: 124 LTVAWQISEVSLILKLRDG-LSNPFKSLGRILKRKTTSAIQQQIEATELPHLNMPALPHV 183
           LTVAWQISEVS ILKLRDG LSNPFKSLG ILKRKTTSAIQ QIEATELP LN+PA+PHV
Sbjct: 125 LTVAWQISEVSFILKLRDGLLSNPFKSLGTILKRKTTSAIQHQIEATELPQLNIPAIPHV 184

Query: 184 NLPEFDLD 190
           +LP+FD D
Sbjct: 185 SLPDFDDD 188

[Close]

BLAST of CcUC07G143310.1 vs. ExPASy TrEMBL
Match: A0A0A0KTW6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G012410 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.7e-60
Identity = 150/192 (78.12%), Postives = 163/192 (84.90%), Query Frame = 0


Query: 1   MAEAAE-EMELISLAIRRLMEENDKRTASHQSS--DADADDDDLQLLSRLLSQVESIREE 60
           MAEAA  EMELISLAIRRLMEEN  RT SH+SS  DADAD DD+QLLSRLLS+VES R E
Sbjct: 1   MAEAAAVEMELISLAIRRLMEENRHRTNSHRSSDADADADADDMQLLSRLLSEVESTRGE 60

Query: 61  QRLKHSQISTQQEYEKIIETDLEPQSE-NMERSGSRVKTEKEIVKELKEVKRQNFITHCL 120
           QRL HS    +QE  +IIET+LE + E N+ERS  ++KTE EIVKELKEVK+QNFITHCL
Sbjct: 61  QRLNHS----KQEDGEIIETNLEAERENNVERSEMKLKTE-EIVKELKEVKKQNFITHCL 120

Query: 121 VSAMIILTVAWQISEVSLILKLRDG-LSNPFKSLGRILKRKTTSAIQQQIEATELPHLNM 180
           VSAMIILTVAWQISEVS ILKLRDG LSNPFKSL  ILKRKTTSAIQ QIEATELPHLN+
Sbjct: 121 VSAMIILTVAWQISEVSFILKLRDGLLSNPFKSLATILKRKTTSAIQHQIEATELPHLNI 180

Query: 181 PALPHVNLPEFD 188
           PALPHV LP+FD
Sbjct: 181 PALPHVTLPDFD 187

[Close]

BLAST of CcUC07G143310.1 vs. ExPASy TrEMBL
Match: A0A5A7TSP6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003210 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 8.3e-60
Identity = 141/184 (76.63%), Postives = 158/184 (85.87%), Query Frame = 0


Query: 8   MELISLAIRRLMEENDKRTASHQSSDADADDDDLQLLSRLLSQVESIREEQRLKHSQIST 67
           MELISLAIRRLMEEN  RT SH+SSD D D DD+QLLS+LLS+VES REEQRL H    +
Sbjct: 1   MELISLAIRRLMEENRNRTTSHRSSDTDTDADDMQLLSQLLSEVESTREEQRLNH---YS 60

Query: 68  QQEYEKIIETDLEPQSE-NMERSGSRVKTEKEIVKELKEVKRQNFITHCLVSAMIILTVA 127
           +QE  +IIET+LE + E N+ERS  +VKTE EIVKELKEVK+QNF+THCLVSAMIILTVA
Sbjct: 61  KQEDGEIIETNLEAEGENNVERSEIKVKTE-EIVKELKEVKKQNFVTHCLVSAMIILTVA 120

Query: 128 WQISEVSLILKLRDG-LSNPFKSLGRILKRKTTSAIQQQIEATELPHLNMPALPHVNLPE 187
           WQISEVS ILKLRDG LSNPFKSLG ILKRKTTSAIQ QIEATELP LN+PA+PHV+LP+
Sbjct: 121 WQISEVSFILKLRDGLLSNPFKSLGTILKRKTTSAIQHQIEATELPQLNIPAIPHVSLPD 180

Query: 188 FDLD 190
           FD D
Sbjct: 181 FDDD 180

[Close]

BLAST of CcUC07G143310.1 vs. ExPASy TrEMBL
Match: A0A5D3CZN3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001570 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.8e-54
Identity = 130/173 (75.14%), Postives = 147/173 (84.97%), Query Frame = 0


Query: 19  MEENDKRTASHQSSDADADDDDLQLLSRLLSQVESIREEQRLKHSQISTQQEYEKIIETD 78
           MEEN  RT SH+SSD D D DD+QLLS+LLS+VES REEQRL H    ++QE  +IIET+
Sbjct: 1   MEENRNRTTSHRSSDTDTDADDMQLLSQLLSEVESTREEQRLNH---YSKQEDGEIIETN 60

Query: 79  LEPQSE-NMERSGSRVKTEKEIVKELKEVKRQNFITHCLVSAMIILTVAWQISEVSLILK 138
           LE + E N+ERS  +VKTE EIVKELKEVK+QNF+THCLVSAMIILTVAWQISEVS ILK
Sbjct: 61  LEAEGENNVERSEIKVKTE-EIVKELKEVKKQNFVTHCLVSAMIILTVAWQISEVSFILK 120

Query: 139 LRDG-LSNPFKSLGRILKRKTTSAIQQQIEATELPHLNMPALPHVNLPEFDLD 190
           LRDG LSNPFKSLG ILKRKTTSAIQ QIEATELP LN+PA+PHV+LP+FD D
Sbjct: 121 LRDGLLSNPFKSLGTILKRKTTSAIQHQIEATELPQLNIPAIPHVSLPDFDDD 169

[Close]

BLAST of CcUC07G143310.1 vs. ExPASy TrEMBL
Match: A0A6J1IS75 (uncharacterized protein LOC111479485 OS=Cucurbita maxima OX=3661 GN=LOC111479485 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.0e-49
Identity = 129/190 (67.89%), Postives = 144/190 (75.79%), Query Frame = 0


Query: 1   MAE-AAEEMELISLAIRRLMEENDKRTASHQSSDADADDDDLQLLSRLLSQVESIREEQR 60
           MAE AAEEMELISLAIRRLMEE + RT SH+SS      +DLQ LSRLLSQVES RE+ R
Sbjct: 1   MAEAAAEEMELISLAIRRLMEEKNNRTGSHRSSGG----NDLQFLSRLLSQVESTREQGR 60

Query: 61  LKHSQISTQQEYEKIIETDLEPQSENMERSGSRVKTEKEIVKELKEVKRQNFITHCLVSA 120
            KHS     Q+ +KII+ +L               TEKEIVKE+KEVKRQNFITHCLVSA
Sbjct: 61  RKHS-----QQDDKIIQKNL---------------TEKEIVKEIKEVKRQNFITHCLVSA 120

Query: 121 MIILTVAWQISEVSLILKLRDGLSNPFKSLGRILKRKTTSAIQQQIEATELPHLNMPALP 180
           M++LTVAWQ+SEVS ILKLRDGLSNPFKSL RILKR TTSAIQ +IEATEL     PALP
Sbjct: 121 MVVLTVAWQVSEVSFILKLRDGLSNPFKSLARILKRNTTSAIQHKIEATEL-----PALP 161

Query: 181 HVNLPEFDLD 190
           HVNLP+F L+
Sbjct: 181 HVNLPDFHLN 161

[Close]

BLAST of CcUC07G143310.1 vs. TAIR 10
Match: AT1G27300.1 (unknown protein; Has 54 Blast hits to 54 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 6; Plants - 34; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 85.1 bits (209), Expect = 6.6e-17
Identity = 60/151 (39.74%), Postives = 93/151 (61.59%), Query Frame = 0


Query: 3   EAAEEMELISLAIRRLMEENDKRTASHQSSDADADDDDLQLLSRLLSQVESIREEQRLKH 62
           E++E++E +S AI +L+ E  KR AS  +   DADD     LS L+SQ+ES     + K 
Sbjct: 2   ESSEDVENLSRAIEKLLHEKRKREASGDAFIEDADDQ--LFLSSLISQLES--PNPKGKE 61

Query: 63  SQISTQQEYEKIIETDLEPQSENMERSGSRVKTEKEIVKELKEVKRQNFITHCLVSAMII 122
             I+ ++E ++    D  P     E      ++ +EI K++K+VK+QN ITH L+SA II
Sbjct: 62  DVITGEEEEKEEESADSSPSKGKSEGQRQLEESIEEIAKDIKKVKKQNKITHVLLSATII 121

Query: 123 LTVAWQISEVSLILKLRDGLSNPFKSLGRIL 154
           LT+ WQ+SE S+I  L+D +S+P +S+G +L
Sbjct: 122 LTLVWQLSEYSMIFMLKDRISHPVRSIGGML 148

The following BLAST results are available for this feature:

BLAST of CcUC07G143310.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895500.1	2.6e-76	86.98	uncharacterized protein LOC120083719 [Benincasa hispida]	[more]
XP_008454012.1	9.1e-61	76.60	PREDICTED: uncharacterized protein LOC103494562 [Cucumis melo]	[more]
XP_004152113.1	7.7e-60	78.13	uncharacterized protein LOC101214522 [Cucumis sativus]	[more]
KAA0044571.1	1.7e-59	76.63	uncharacterized protein E6C27_scaffold46G003210 [Cucumis melo var. makuwa]	[more]
KAE8649098.1	1.5e-58	78.26	hypothetical protein Csa_015237 [Cucumis sativus]	[more]

BLAST of CcUC07G143310.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC07G143310.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BXR6	4.4e-61	76.60	uncharacterized protein LOC103494562 OS=Cucumis melo OX=3656 GN=LOC103494562 PE=...	[more]
A0A0A0KTW6	3.7e-60	78.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G012410 PE=4 SV=1	[more]
A0A5A7TSP6	8.3e-60	76.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CZN3	1.8e-54	75.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1IS75	1.0e-49	67.89	uncharacterized protein LOC111479485 OS=Cucurbita maxima OX=3661 GN=LOC111479485...	[more]

BLAST of CcUC07G143310.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27300.1	6.6e-17	39.74	unknown protein; Has 54 Blast hits to 54 proteins in 19 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..21
None	No IPR available	PANTHER	PTHR35280	F17L21.9	coord: 5..189
None	No IPR available	PANTHER	PTHR35280:SF1	F17L21.9	coord: 5..189

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC07G143310	CcUC07G143310	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC07G143310.1-exon	CcUC07G143310.1-exon-CicolChr07:29474943..29475700	exon
CcUC07G143310.1-exon	CcUC07G143310.1-exon-CicolChr07:29477744..29478051	exon
CcUC07G143310.1-exon	CcUC07G143310.1-exon-CicolChr07:29481689..29482021	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC07G143310.1-three_prime_utr	CcUC07G143310.1-three_prime_utr-CicolChr07:29474943..29475274	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC07G143310.1-cds	CcUC07G143310.1-cds-CicolChr07:29475275..29475700	CDS
CcUC07G143310.1-cds	CcUC07G143310.1-cds-CicolChr07:29477744..29477893	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC07G143310.1-five_prime_utr	CcUC07G143310.1-five_prime_utr-CicolChr07:29477894..29478051	five_prime_UTR
CcUC07G143310.1-five_prime_utr	CcUC07G143310.1-five_prime_utr-CicolChr07:29481689..29482021	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC07G143310.1	CcUC07G143310.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane