CcUC06G118900 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G118900
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Protein Ycf2
Location	CicolChr06: 14387338 .. 14388268 (-)
RNA-Seq Expression	CcUC06G118900
Synteny	CcUC06G118900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCATCGAAATAATGAGTCACCATCGATATCGACACATCTGAGATCGCTAAATGTTCGGGAGTTCCTCTATTCAATCCTTTTCCTTCTTCTTGTTGCTGTATATCTCGTTCGTACACATCTTCTCTTTGTTTCTCGAGCCTATAGTGAGTTACAGACAGAGTTCGAAAAGGTCAAATCTTTGATGATTCCATCATACATGATTGAGTTGCGAAAACTTCTGGATAGGTATCCCACATCTGAACTGAATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTGCTCTGGAACAATTAGGAGATTCTCTAGAAGAAATATGGGGTTCTGCTTCTGGTGGCAACATGCTATGGGGTGGCGGTCCCGCTTATGGGGTCAAATCAATACGTTCGAAGAAGAAAGATTGGAATATCAATCTCATCGATCTCATAAGTATCATACCAAATCCCATCAATCGAATCGCTTTTTCGAGAAATACGAGACATCTAAGTCATACAAGTAAAGAGATATATTCATTGATAAGAAAAAGAAAAAATGTGAACGGTGATTGGATTGATGATAAAATNTATGAAATGGGGGTCTTTCCTTCGCCTATCGTATGTATTGGCTTGGCTTCGTGCAGAACCAAGGGGGCATTCTGGCGGGCGCGCGCGTGTAGGAAGGCCGACCCCGAAGATTCATAAGAATTCGTTTTCGGATGTTCTTCTTCTTTCGCCAAGAGATCCCGTTTATCCCCGAAGCCGATTGTTCTTGAATTTCGCATCTTGGGCTTGCTTTTCCAGTAGTTATCAGGCTGGAACTGTCCCTGAGGAGGTTCATGAGCCTCTCGTTTTCTTTCTCTCATCTCCCCGGGAGCTTGTCTTGCGAGATTTTGTCGACACTTGGCTTAGTAGGAAGAGGATGAAAGTTTTCCACCTACTCCTTATGAGCTAA

mRNA sequence

ATGATTCATCGAAATAATGAGTCACCATCGATATCGACACATCTGAGATCGCTAAATGTTCGGGAGTTCCTCTATTCAATCCTTTTCCTTCTTCTTGTTGCTGTATATCTCGTTCGTACACATCTTCTCTTTGTTTCTCGAGCCTATAGTGAGTTACAGACAGAGTTCGAAAAGGTCAAATCTTTGATGATTCCATCATACATGATTGAGTTGCGAAAACTTCTGGATAGGTATCCCACATCTGAACTGAATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTGCTCTGGAACAATTAGGAGATTCTCTAGAAGAAATATGGGGTTCTGCTTCTGGTGGCAACATGCTATGGGGTGGCGGTCCCGCTTATGGGGTCAAATCAATACGTTCGAAGAAGAAAGATTGGAATATCAATCTCATCGATCTCATAAGTATCATACCAAATCCCATCAATCGAATCGCTTTTTCGAGAAATACGAGACATCTAAGTCATACAAAACCAAGGGGGCATTCTGGCGGGCGCGCGCGTGTAGGAAGGCCGACCCCGAAGATTCATAAGAATTCGTTTTCGGATGTTCTTCTTCTTTCGCCAAGAGATCCCGTTTATCCCCGAAGCCGATTGTTCTTGAATTTCGCATCTTGGGCTTGCTTTTCCAGTAGTTATCAGGCTGGAACTGTCCCTGAGGAGGTTCATGAGCCTCTCGTTTTCTTTCTCTCATCTCCCCGGGAGCTTGTCTTGCGAGATTTTGTCGACACTTGGCTTAGTAGGAAGAGGATGAAAGTTTTCCACCTACTCCTTATGAGCTAA

Coding sequence (CDS)

ATGATTCATCGAAATAATGAGTCACCATCGATATCGACACATCTGAGATCGCTAAATGTTCGGGAGTTCCTCTATTCAATCCTTTTCCTTCTTCTTGTTGCTGTATATCTCGTTCGTACACATCTTCTCTTTGTTTCTCGAGCCTATAGTGAGTTACAGACAGAGTTCGAAAAGGTCAAATCTTTGATGATTCCATCATACATGATTGAGTTGCGAAAACTTCTGGATAGGTATCCCACATCTGAACTGAATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTGCTCTGGAACAATTAGGAGATTCTCTAGAAGAAATATGGGGTTCTGCTTCTGGTGGCAACATGCTATGGGGTGGCGGTCCCGCTTATGGGGTCAAATCAATACGTTCGAAGAAGAAAGATTGGAATATCAATCTCATCGATCTCATAAGTATCATACCAAATCCCATCAATCGAATCGCTTTTTCGAGAAATACGAGACATCTAAGTCATACAAAACCAAGGGGGCATTCTGGCGGGCGCGCGCGTGTAGGAAGGCCGACCCCGAAGATTCATAAGAATTCGTTTTCGGATGTTCTTCTTCTTTCGCCAAGAGATCCCGTTTATCCCCGAAGCCGATTGTTCTTGAATTTCGCATCTTGGGCTTGCTTTTCCAGTAGTTATCAGGCTGGAACTGTCCCTGAGGAGGTTCATGAGCCTCTCGTTTTCTTTCTCTCATCTCCCCGGGAGCTTGTCTTGCGAGATTTTGTCGACACTTGGCTTAGTAGGAAGAGGATGAAAGTTTTCCACCTACTCCTTATGAGCTAA

Protein sequence

MIHRNNESPSISTHLRSLNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVKSLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTKPRGHSGGRARVGRPTPKIHKNSFSDVLLLSPRDPVYPRSRLFLNFASWACFSSSYQAGTVPEEVHEPLVFFLSSPRELVLRDFVDTWLSRKRMKVFHLLLMS

Homology

[Close]

BLAST of CcUC06G118900 vs. NCBI nr
Match: YP_009752793.1 (Ycf2 protein [Cyclantheropsis parviflora] >YP_009752811.1 Ycf2 protein [Cyclantheropsis parviflora] >QIT05443.1 Ycf2 protein [Cyclantheropsis parviflora] >QIT05461.1 Ycf2 protein [Cyclantheropsis parviflora])

HSP 1 Score: 322.4 bits (825), Expect = 3.7e-84
Identity = 168/176 (95.45%), Postives = 169/176 (96.02%), Query Frame = 0


Query: 1    MIHRNNESPSISTHLRSLNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 60
            MIHRNNESPSISTHLRSLNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK
Sbjct: 1309 MIHRNNESPSISTHLRSLNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 1368

Query: 61   SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 120
            SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG
Sbjct: 1369 SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 1428

Query: 121  PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTKPRGHSGGRAR 177
            PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHT    +S  R R
Sbjct: 1429 PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIRKR 1484

[Close]

BLAST of CcUC06G118900 vs. NCBI nr
Match: YP_009752370.1 (Ycf2 protein [Bryonia marmorata] >YP_009752388.1 Ycf2 protein [Bryonia marmorata] >QIT04344.1 Ycf2 protein [Bryonia marmorata] >QIT04362.1 Ycf2 protein [Bryonia marmorata])

HSP 1 Score: 319.7 bits (818), Expect = 2.4e-83
Identity = 167/176 (94.89%), Postives = 168/176 (95.45%), Query Frame = 0


Query: 1    MIHRNNESPSISTHLRSLNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 60
            MIHRNNESPSISTHLRS NVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK
Sbjct: 1316 MIHRNNESPSISTHLRSPNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 1375

Query: 61   SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 120
            SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG
Sbjct: 1376 SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 1435

Query: 121  PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTKPRGHSGGRAR 177
            PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHT    +S  R R
Sbjct: 1436 PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIRKR 1491

[Close]

BLAST of CcUC06G118900 vs. NCBI nr
Match: QJR53001.1 (hypothetical protein RF2 [Herpetospermum pedunculosum] >QJR53017.1 hypothetical protein RF2 [Herpetospermum pedunculosum])

HSP 1 Score: 319.7 bits (818), Expect = 2.4e-83
Identity = 167/176 (94.89%), Postives = 168/176 (95.45%), Query Frame = 0


Query: 1    MIHRNNESPSISTHLRSLNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 60
            MIHRNNESPSISTHLRS NVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK
Sbjct: 1318 MIHRNNESPSISTHLRSPNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 1377

Query: 61   SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 120
            SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG
Sbjct: 1378 SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 1437

Query: 121  PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTKPRGHSGGRAR 177
            PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHT    +S  R R
Sbjct: 1438 PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIRKR 1493

[Close]

BLAST of CcUC06G118900 vs. NCBI nr
Match: YP_010131137.1 (hypothetical protein RF2 [Benincasa hispida] >YP_010131154.1 hypothetical protein RF2 [Benincasa hispida] >QPZ75785.1 hypothetical protein RF2 [Benincasa hispida] >QPZ75802.1 hypothetical protein RF2 [Benincasa hispida] >QSQ72354.1 Ycf2 protein [Benincasa hispida] >QSQ72372.1 Ycf2 protein [Benincasa hispida])

HSP 1 Score: 319.7 bits (818), Expect = 2.4e-83
Identity = 167/176 (94.89%), Postives = 168/176 (95.45%), Query Frame = 0


Query: 1    MIHRNNESPSISTHLRSLNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 60
            MIHRNNESPSISTHLRS NVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK
Sbjct: 1316 MIHRNNESPSISTHLRSPNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 1375

Query: 61   SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 120
            SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG
Sbjct: 1376 SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 1435

Query: 121  PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTKPRGHSGGRAR 177
            PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHT    +S  R R
Sbjct: 1436 PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIRKR 1491

[Close]

BLAST of CcUC06G118900 vs. NCBI nr
Match: YP_009752286.1 (Ycf2 protein [Trichosanthes baviensis] >YP_009752303.1 Ycf2 protein [Trichosanthes baviensis] >QIT04260.1 Ycf2 protein [Trichosanthes baviensis] >QIT04277.1 Ycf2 protein [Trichosanthes baviensis])

HSP 1 Score: 319.7 bits (818), Expect = 2.4e-83
Identity = 167/176 (94.89%), Postives = 168/176 (95.45%), Query Frame = 0


Query: 1    MIHRNNESPSISTHLRSLNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 60
            MIHRNNESPSISTHLRS NVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK
Sbjct: 1316 MIHRNNESPSISTHLRSPNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 1375

Query: 61   SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 120
            SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG
Sbjct: 1376 SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 1435

Query: 121  PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTKPRGHSGGRAR 177
            PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHT    +S  R R
Sbjct: 1436 PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIRKR 1491

[Close]

BLAST of CcUC06G118900 vs. ExPASy Swiss-Prot
Match: B1NWJ3 (Protein Ycf2 OS=Manihot esculenta OX=3983 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.8e-78
Identity = 157/176 (89.20%), Postives = 159/176 (90.34%), Query Frame = 0


Query: 1    MIHRNNESPSISTHLRSLNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 60
            MIHRNNE P ISTHLRS NVREFLYSILFLLLVA YLV THLLFVS AYSELQTEFEKVK
Sbjct: 1311 MIHRNNEPPLISTHLRSPNVREFLYSILFLLLVAGYLVCTHLLFVSHAYSELQTEFEKVK 1370

Query: 61   SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 120
            SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGD LEE+ GSASGGNMLWGGG
Sbjct: 1371 SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDFLEEMRGSASGGNMLWGGG 1430

Query: 121  PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTKPRGHSGGRAR 177
            PAYGVKSIRSKKK WNINLIDLISIIPNPINRI FSRNTRHLSHT    +S  R R
Sbjct: 1431 PAYGVKSIRSKKKFWNINLIDLISIIPNPINRITFSRNTRHLSHTSKEIYSLIRKR 1486

[Close]

BLAST of CcUC06G118900 vs. ExPASy Swiss-Prot
Match: A4GYV4 (Protein Ycf2 OS=Populus trichocarpa OX=3694 GN=ycf2-1 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 3.2e-78
Identity = 158/176 (89.77%), Postives = 160/176 (90.91%), Query Frame = 0


Query: 1    MIHRNNESPSISTHLRSLNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 60
            MIHRNNE P IST LRS NVREFLYSILFLLLVA YLVRTHLLFVSRAYSELQTEFEKVK
Sbjct: 1319 MIHRNNEPPLISTRLRSPNVREFLYSILFLLLVAGYLVRTHLLFVSRAYSELQTEFEKVK 1378

Query: 61   SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 120
            SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGD LEEI GSASGGNMLWGGG
Sbjct: 1379 SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDLLEEIRGSASGGNMLWGGG 1438

Query: 121  PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTKPRGHSGGRAR 177
            PAYGVKSIRSKKK +NINLIDLISIIPNPINRI FSRNTRHLSHT    +S  R R
Sbjct: 1439 PAYGVKSIRSKKKFFNINLIDLISIIPNPINRITFSRNTRHLSHTSKEIYSLIRKR 1494

[Close]

BLAST of CcUC06G118900 vs. ExPASy Swiss-Prot
Match: Q49KT6 (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 5.4e-78
Identity = 154/176 (87.50%), Postives = 160/176 (90.91%), Query Frame = 0


Query: 1    MIHRNNESPSISTHLRSLNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 60
            MIHRNNESP ISTHLRS NVREFLYSILFLLLVA Y+VRTHLLFVSRAYSELQTEFEKVK
Sbjct: 1315 MIHRNNESPLISTHLRSPNVREFLYSILFLLLVATYIVRTHLLFVSRAYSELQTEFEKVK 1374

Query: 61   SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 120
            S MIPSYM+ELRKLLDRYPTSELNSFWLKNLFLVALE+LGDSLEEI GSASGGNMLWGGG
Sbjct: 1375 SWMIPSYMMELRKLLDRYPTSELNSFWLKNLFLVALEKLGDSLEEIRGSASGGNMLWGGG 1434

Query: 121  PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTKPRGHSGGRAR 177
            PAYG KSIRSKKK WNINLIDLISIIPNPI+RI FS+ TRHLSHT    +S  R R
Sbjct: 1435 PAYGFKSIRSKKKYWNINLIDLISIIPNPIHRITFSKKTRHLSHTSKEIYSLIRKR 1490

[Close]

BLAST of CcUC06G118900 vs. ExPASy Swiss-Prot
Match: Q2QD30 (Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 7.0e-78
Identity = 155/171 (90.64%), Postives = 158/171 (92.40%), Query Frame = 0


Query: 1    MIHRNNESPSISTHLRSLNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 60
            MIHRNNESPSISTHLRS NVREFLYSILFLLL+AVYLVRTHLLFVSRAYSELQTEFEKVK
Sbjct: 1028 MIHRNNESPSISTHLRSPNVREFLYSILFLLLIAVYLVRTHLLFVSRAYSELQTEFEKVK 1087

Query: 61   SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 120
            SLMIPSYMIELRKLLDRYPT E NSFWLKNLFLVALEQLGDSLEEIWGSAS      GGG
Sbjct: 1088 SLMIPSYMIELRKLLDRYPTYERNSFWLKNLFLVALEQLGDSLEEIWGSAS------GGG 1147

Query: 121  PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTKPRGHS 172
            PAYGVKSIRSKKKDWNINLI+LISIIPNPINRIAFSRNTRHLSHT    +S
Sbjct: 1148 PAYGVKSIRSKKKDWNINLINLISIIPNPINRIAFSRNTRHLSHTSKEIYS 1192

[Close]

BLAST of CcUC06G118900 vs. ExPASy Swiss-Prot
Match: Q14F97 (Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 7.0e-78
Identity = 158/176 (89.77%), Postives = 159/176 (90.34%), Query Frame = 0


Query: 1    MIHRNNESPSISTHLRSLNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 60
            MIHRNNE P IST LRS NVREFLYSILFLLLVA YLVRTHLLFVSRAYSELQTEFEKVK
Sbjct: 1316 MIHRNNEPPLISTRLRSPNVREFLYSILFLLLVAGYLVRTHLLFVSRAYSELQTEFEKVK 1375

Query: 61   SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 120
            SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGD LEEI GSASGGNMLWGGG
Sbjct: 1376 SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDLLEEIRGSASGGNMLWGGG 1435

Query: 121  PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTKPRGHSGGRAR 177
            PAYGVKSIRSKKK  NINLIDLISIIPNPINRI FSRNTRHLSHT    +S  R R
Sbjct: 1436 PAYGVKSIRSKKKFLNINLIDLISIIPNPINRITFSRNTRHLSHTSKEIYSLIRKR 1491

[Close]

BLAST of CcUC06G118900 vs. ExPASy TrEMBL
Match: A0A6H0ET43 (Protein Ycf2 OS=Cyclantheropsis parviflora OX=387129 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.8e-84
Identity = 168/176 (95.45%), Postives = 169/176 (96.02%), Query Frame = 0


Query: 1    MIHRNNESPSISTHLRSLNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 60
            MIHRNNESPSISTHLRSLNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK
Sbjct: 1309 MIHRNNESPSISTHLRSLNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 1368

Query: 61   SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 120
            SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG
Sbjct: 1369 SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 1428

Query: 121  PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTKPRGHSGGRAR 177
            PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHT    +S  R R
Sbjct: 1429 PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIRKR 1484

[Close]

BLAST of CcUC06G118900 vs. ExPASy TrEMBL
Match: A0A343F2F1 (Protein Ycf2 OS=Citrullus colocynthis OX=252529 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 1.2e-83
Identity = 167/176 (94.89%), Postives = 168/176 (95.45%), Query Frame = 0


Query: 1    MIHRNNESPSISTHLRSLNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 60
            MIHRNNESPSISTHLRS NVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK
Sbjct: 1314 MIHRNNESPSISTHLRSPNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 1373

Query: 61   SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 120
            SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG
Sbjct: 1374 SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 1433

Query: 121  PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTKPRGHSGGRAR 177
            PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHT    +S  R R
Sbjct: 1434 PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIRKR 1489

[Close]

BLAST of CcUC06G118900 vs. ExPASy TrEMBL
Match: A0A6H0ET42 (Protein Ycf2 OS=Trichosanthes kirilowii OX=3677 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 1.2e-83
Identity = 167/176 (94.89%), Postives = 168/176 (95.45%), Query Frame = 0


Query: 1    MIHRNNESPSISTHLRSLNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 60
            MIHRNNESPSISTHLRS NVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK
Sbjct: 1313 MIHRNNESPSISTHLRSPNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 1372

Query: 61   SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 120
            SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG
Sbjct: 1373 SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 1432

Query: 121  PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTKPRGHSGGRAR 177
            PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHT    +S  R R
Sbjct: 1433 PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIRKR 1488

[Close]

BLAST of CcUC06G118900 vs. ExPASy TrEMBL
Match: A0A6H0EV63 (Protein Ycf2 OS=Corallocarpus boehmii OX=386154 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 1.2e-83
Identity = 167/176 (94.89%), Postives = 168/176 (95.45%), Query Frame = 0


Query: 1    MIHRNNESPSISTHLRSLNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 60
            MIHRNNESPSISTHLRS NVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK
Sbjct: 1324 MIHRNNESPSISTHLRSPNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 1383

Query: 61   SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 120
            SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG
Sbjct: 1384 SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 1443

Query: 121  PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTKPRGHSGGRAR 177
            PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHT    +S  R R
Sbjct: 1444 PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIRKR 1499

[Close]

BLAST of CcUC06G118900 vs. ExPASy TrEMBL
Match: A0A6M3RUH1 (Protein Ycf2 OS=Trichosanthes rosthornii OX=676073 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 1.2e-83
Identity = 167/176 (94.89%), Postives = 168/176 (95.45%), Query Frame = 0


Query: 1    MIHRNNESPSISTHLRSLNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 60
            MIHRNNESPSISTHLRS NVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK
Sbjct: 1316 MIHRNNESPSISTHLRSPNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 1375

Query: 61   SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 120
            SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG
Sbjct: 1376 SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 1435

Query: 121  PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTKPRGHSGGRAR 177
            PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHT    +S  R R
Sbjct: 1436 PAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSLIRKR 1491

[Close]

BLAST of CcUC06G118900 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 274.6 bits (701), Expect = 8.2e-74
Identity = 152/179 (84.92%), Postives = 156/179 (87.15%), Query Frame = 0


Query: 1    MIHRNNESPSISTHLRSLNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 60
            MIHRNNES  ISTHLRS NVRE LYSILFLLLVA Y+VRTHLLFVSRAYSELQTEFEK+K
Sbjct: 1328 MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIK 1387

Query: 61   SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 120
            SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGD LEEI G  SGGNMLWGG 
Sbjct: 1388 SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDCLEEIRG--SGGNMLWGGD 1447

Query: 121  PAYGVKSIRSKKKDWNIN---LIDLISIIPNPINRIAFSRNTRHLSHTKPRGHSGGRAR 177
            PAYGVKSIRSKKKD  IN   +IDLISIIPNPINRI FSRNTRHLSHT    +S  R R
Sbjct: 1448 PAYGVKSIRSKKKDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKEIYSLIRKR 1504

[Close]

BLAST of CcUC06G118900 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 274.6 bits (701), Expect = 8.2e-74
Identity = 152/179 (84.92%), Postives = 156/179 (87.15%), Query Frame = 0


Query: 1    MIHRNNESPSISTHLRSLNVREFLYSILFLLLVAVYLVRTHLLFVSRAYSELQTEFEKVK 60
            MIHRNNES  ISTHLRS NVRE LYSILFLLLVA Y+VRTHLLFVSRAYSELQTEFEK+K
Sbjct: 1328 MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIK 1387

Query: 61   SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGG 120
            SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGD LEEI G  SGGNMLWGG 
Sbjct: 1388 SLMIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDCLEEIRG--SGGNMLWGGD 1447

Query: 121  PAYGVKSIRSKKKDWNIN---LIDLISIIPNPINRIAFSRNTRHLSHTKPRGHSGGRAR 177
            PAYGVKSIRSKKKD  IN   +IDLISIIPNPINRI FSRNTRHLSHT    +S  R R
Sbjct: 1448 PAYGVKSIRSKKKDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKEIYSLIRKR 1504

The following BLAST results are available for this feature:

BLAST of CcUC06G118900 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009752793.1	3.7e-84	95.45	Ycf2 protein [Cyclantheropsis parviflora] >YP_009752811.1 Ycf2 protein [Cyclanth...	[more]
YP_009752370.1	2.4e-83	94.89	Ycf2 protein [Bryonia marmorata] >YP_009752388.1 Ycf2 protein [Bryonia marmorata...	[more]
QJR53001.1	2.4e-83	94.89	hypothetical protein RF2 [Herpetospermum pedunculosum] >QJR53017.1 hypothetical ...	[more]
YP_010131137.1	2.4e-83	94.89	hypothetical protein RF2 [Benincasa hispida] >YP_010131154.1 hypothetical protei...	[more]
YP_009752286.1	2.4e-83	94.89	Ycf2 protein [Trichosanthes baviensis] >YP_009752303.1 Ycf2 protein [Trichosanth...	[more]

BLAST of CcUC06G118900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B1NWJ3	1.8e-78	89.20	Protein Ycf2 OS=Manihot esculenta OX=3983 GN=ycf2 PE=3 SV=1	[more]
A4GYV4	3.2e-78	89.77	Protein Ycf2 OS=Populus trichocarpa OX=3694 GN=ycf2-1 PE=3 SV=1	[more]
Q49KT6	5.4e-78	87.50	Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1	[more]
Q2QD30	7.0e-78	90.64	Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1	[more]
Q14F97	7.0e-78	89.77	Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1	[more]

BLAST of CcUC06G118900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0ET43	1.8e-84	95.45	Protein Ycf2 OS=Cyclantheropsis parviflora OX=387129 GN=ycf2 PE=3 SV=1	[more]
A0A343F2F1	1.2e-83	94.89	Protein Ycf2 OS=Citrullus colocynthis OX=252529 GN=ycf2 PE=3 SV=1	[more]
A0A6H0ET42	1.2e-83	94.89	Protein Ycf2 OS=Trichosanthes kirilowii OX=3677 GN=ycf2 PE=3 SV=1	[more]
A0A6H0EV63	1.2e-83	94.89	Protein Ycf2 OS=Corallocarpus boehmii OX=386154 GN=ycf2 PE=3 SV=1	[more]
A0A6M3RUH1	1.2e-83	94.89	Protein Ycf2 OS=Trichosanthes rosthornii OX=676073 GN=ycf2 PE=3 SV=1	[more]

BLAST of CcUC06G118900 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	8.2e-74	84.92	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	8.2e-74	84.92	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008543	Uncharacterised protein family Ycf2	PFAM	PF05695	DUF825	coord: 1..165 e-value: 2.6E-97 score: 326.6
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 6..165
None	No IPR available	PANTHER	PTHR33078:SF26	PROTEIN YCF2	coord: 6..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G118900.1	CcUC06G118900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity