CcUC06G118860 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC06G118860
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic
Location	CicolChr06: 14376235 .. 14378011 (+)
RNA-Seq Expression	CcUC06G118860
Synteny	CcUC06G118860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTTGGACCGATCGATATACCAATAATCAAGTTTTCAGTCAACTGGTGGAATACATCGCATCAACCTGGGAGCATTAGCAGATTACCAAGGAATAGAGACTTTACAAATAAAGCCCGAGGAATGGCATTCCATTGCAGTCATTTTATATGTATATGGTTACAATTATCTACGTTCCCAATGTGCTTATGATGTAGCACCAGGCGGACTGTTAGCTAGTGTGTATCATCTTACGAGAATCGAGTATGGTATAGATCAACCGGAAGAGGTATGCATAAAAGTATTTGCCGCAAGGATAAATCCTAGAATTCCGTCTGTTTTCTGGGTTTGGAAAAGTGCGGATTTTCCAGAAAGGGAATCTTATGATATGTTGGGAATTTCTTATGATAATCATCCACGTCTAAAGCGTATCTTAATGCCTGAAAGTTGGGTAGGATGGCCTTTACGTAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTCATTAAATAATACGAAACTAATCTTCACTTCGACAACTCAAGATATTCAAATACATTTGTACGTTCTCTTATAGATATAGCATAGTAATTGAAGTCTCATTCATCTTATTATTATTGATTTTAAATAAAAAAAAATACAATTAGAGATTTGGTGAGATTATCAAATTTTTAAGATACTTATTTTTGATGAGCCGAGCTAATAGGATGAACTAAATGAGTTCTGCATTATGAACTATATATCACGCATATGACTTAGATGTGCTTGAAAAAATCACATAGGGGGAAATGAAGAAATATAATATGAAAAGAGAATCGGATTCTATTTGTACTGTATCTGAGATCAATCTTGGCCATTCCCGCCTTTCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTTGACTGCAACCTTACCACAATAGGACGAGAGGGAAATGGCCCTTCTTCAAGGTTAAGCTACCTTACCTTAGTCGACTAAGCAAGTGAGACGGGTAGACCACCCGGAAGGAAAGTAGTTTGTTGTTCAGTCTTGGTATGCGGTATTGTCCAAGTCTTTGATTACTTGACTGGACGTACCTACCCTCGTAATTGATAGATAGAAACCTATGGGAAAAGAAAACCCTGTTCTGTTTAGTTTTCTTACTAGTTCTAAAAGTGATCGTAAAGTTCCCCGCTATCGAGTGTGATAAAGCCAAGTTTTCAAGCAGCCAAAAGCTAGTTTGATTGGATGTGCCAGTAGGGCTTCCTAACGTTCTATAATCAACTTAAGCTATCACGAAAAGGCTAAAGATAAAAAAAAGCGAATCATCTTTCTTTCTATACGATACGCAATTTCGAAATCAGGGAAAAATTCATCTTGATAGCACAGGAAAGAGAGAACATCTTCCTTCTGTGACATTTACCCCGAAAAAAAAGCCTATTCTATACCAGCTTCTTCTATAGATGAGATAACTGGAGCAGATTCAATAGCAAGGGATATTCACCCAGCAGCTCAAGCAGCAGATTCTATTCTGGGCATGAATGTGCAACCTAAAGACTCGCAAGTTGCTCCAGAGTACCCTCTTGGGCAGCAGTCGAAGAATAGCTAG

mRNA sequence

ATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGCACCAGGCGGACTGTTAGCTAGTGTGTATCATCTTACGAGAATCGAGTATGGTATAGATCAACCGGAAGAGGTATGCATAAAAGTATTTGCCGCAAGGATAAATCCTAGAATTCCGTCTGTTTTCTGGGTTTGGAAAAGTGCGGATTTTCCAGAAAGGGAATCTTATGATATGTTGGGAATTTCTTATGATAATCATCCACGTCTAAAGCGTATCTTAATGCCTGAAAGTTGGGTAGGATGGCCTTTACCTTCTTCTATAGATGAGATAACTGGAGCAGATTCAATAGCAAGGGATATTCACCCAGCAGCTCAAGCAGCAGATTCTATTCTGGGCATGAATGTGCAACCTAAAGACTCGCAAGTTGCTCCAGAGTACCCTCTTGGGCAGCAGTCGAAGAATAGCTAG

Coding sequence (CDS)

ATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGCACCAGGCGGACTGTTAGCTAGTGTGTATCATCTTACGAGAATCGAGTATGGTATAGATCAACCGGAAGAGGTATGCATAAAAGTATTTGCCGCAAGGATAAATCCTAGAATTCCGTCTGTTTTCTGGGTTTGGAAAAGTGCGGATTTTCCAGAAAGGGAATCTTATGATATGTTGGGAATTTCTTATGATAATCATCCACGTCTAAAGCGTATCTTAATGCCTGAAAGTTGGGTAGGATGGCCTTTACCTTCTTCTATAGATGAGATAACTGGAGCAGATTCAATAGCAAGGGATATTCACCCAGCAGCTCAAGCAGCAGATTCTATTCTGGGCATGAATGTGCAACCTAAAGACTCGCAAGTTGCTCCAGAGTACCCTCTTGGGCAGCAGTCGAAGAATAGCTAG

Protein sequence

MEEGTEKKVSATTAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLPSSIDEITGADSIARDIHPAAQAADSILGMNVQPKDSQVAPEYPLGQQSKNS

Homology

[Close]

BLAST of CcUC06G118860 vs. NCBI nr
Match: YP_009751741.1 (NADH dehydrogenase subunit J [Herpetospermum pedunculosum] >QIT04474.1 NADH dehydrogenase subunit J [Herpetospermum pedunculosum] >QJR52959.1 NADH-plastoquinone oxidoreductase subunit J [Herpetospermum pedunculosum])

HSP 1 Score: 184.5 bits (467), Expect = 6.7e-43
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 14  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 73
           APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG
Sbjct: 60  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 119

Query: 74  ISYDNHPRLKRILMPESWVGWPL 97
           ISYDNHPRLKRILMPESWVGWPL
Sbjct: 120 ISYDNHPRLKRILMPESWVGWPL 142

[Close]

BLAST of CcUC06G118860 vs. NCBI nr
Match: ABS88047.1 (NADH dehydrogenase subunit J, partial [Lagenaria sphaerica] >ABS88048.1 NADH dehydrogenase subunit J, partial [Lagenaria siceraria])

HSP 1 Score: 184.5 bits (467), Expect = 6.7e-43
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 14  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 73
           APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG
Sbjct: 35  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 94

Query: 74  ISYDNHPRLKRILMPESWVGWPL 97
           ISYDNHPRLKRILMPESWVGWPL
Sbjct: 95  ISYDNHPRLKRILMPESWVGWPL 117

[Close]

BLAST of CcUC06G118860 vs. NCBI nr
Match: YP_009236283.1 (NADH-plastoquinone oxidoreductase subunit J [Gynostemma pentaphyllum] >YP_009317389.1 NADH dehydrogenase subunit J [Coccinia grandis] >YP_009420797.1 NADH dehydrogenase subunit J [Citrullus colocynthis] >YP_009430630.1 NADH dehydrogenase subunit J [Gynostemma cardiospermum] >YP_009431645.1 NADH dehydrogenase subunit J [Citrullus rehmii] >YP_009439807.1 NADH dehydrogenase subunit J [Gynostemma laxiflorum] >YP_009439894.1 NADH dehydrogenase subunit J [Gynostemma caulopterum] >YP_009440160.1 NADH dehydrogenase subunit J [Gynostemma longipes] >YP_009440247.1 NADH dehydrogenase subunit J [Gynostemma burmanicum (nom. inval.)] >YP_009440334.1 NADH dehydrogenase subunit J [Gynostemma pubescens] >YP_009447453.1 NADH dehydrogenase subunit J [Cucurbita maxima] >YP_009447538.1 NADH dehydrogenase subunit J [Cucurbita moschata] >YP_009456064.1 NADH dehydrogenase subunit J [Momordica charantia] >YP_009456149.1 NADH dehydrogenase subunit J [Lagenaria siceraria] >YP_009468864.1 NADH dehydrogenase subunit J [Gynostemma compressum] >YP_009505083.1 NADH dehydrogenase subunit J [Cucurbita pepo] >YP_009751825.1 NADH dehydrogenase subunit J [Indofevillea khasiana] >YP_009751993.1 NADH dehydrogenase subunit J [Cionosicys macranthus] >YP_009752078.1 NADH dehydrogenase subunit J [Dendrosicyos socotranus] >YP_009752669.1 NADH dehydrogenase subunit J [Ampelosycios humblotii] >YP_009752753.1 NADH dehydrogenase subunit J [Cyclantheropsis parviflora] >YP_009752838.1 NADH dehydrogenase subunit J [Baijiania yunnanensis] >YP_009753007.1 NADH dehydrogenase subunit J [Gerrardanthus macrorhizus] >YP_009753092.1 NADH dehydrogenase subunit J [Corallocarpus boehmii] >YP_009753261.1 NADH dehydrogenase subunit J [Nothoalsomitra suberosa] >YP_010015142.1 NADH dehydrogenase subunit J [Gynostemma yixingense] >YP_010131097.1 NADH-plastoquinone oxidoreductase subunit J [Benincasa hispida] >ALO21769.1 NdhJ [Cucurbita argyrosperma] >ALO21826.1 NdhJ [Cucurbita argyrosperma var. palmeri] >ALO21847.1 NdhJ [Cucurbita argyrosperma subsp. sororia] >ALO22065.1 NdhJ [Cucurbita ecuadorensis] >ALO22136.1 NdhJ [Cucurbita ficifolia] >ALO22158.1 NdhJ [Cucurbita foetidissima] >ALO22241.1 NdhJ [Cucurbita lundelliana] >ALO22331.1 NdhJ [Cucurbita maxima subsp. andreana] >ALO22449.1 NdhJ [Cucurbita okeechobeensis] >ALO22487.1 NdhJ [Cucurbita okeechobeensis subsp. martinezii] >ALO22587.1 NdhJ [Cucurbita pepo subsp. fraterna] >ALO22650.1 NdhJ [Cucurbita pepo subsp. ovifera] >ALO22728.1 NdhJ [Cucurbita pepo var. ozarkana] >ALO22760.1 NdhJ [Cucurbita pepo subsp. pepo] >ALO22812.1 NdhJ [Cucurbita pepo var. texana] >ALO22928.1 NdhJ [Cucurbita pedatifolia] >QNM38534.1 NADH-plastoquinone oxidoreductase subunit J [Lagenaria siceraria var. microcarpa] >QZL38596.1 NADH dehydrogenase subunit J [Citrullus naudinianus] >QZL38684.1 NADH dehydrogenase subunit J [Citrullus ecirrhosus])

HSP 1 Score: 184.5 bits (467), Expect = 6.7e-43
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 14  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 73
           APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG
Sbjct: 60  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 119

Query: 74  ISYDNHPRLKRILMPESWVGWPL 97
           ISYDNHPRLKRILMPESWVGWPL
Sbjct: 120 ISYDNHPRLKRILMPESWVGWPL 142

[Close]

BLAST of CcUC06G118860 vs. NCBI nr
Match: YP_009525189.1 (NADH-plastoquinone oxidoreductase subunit J [Hodgsonia macrocarpa] >YP_009560838.1 NdhJ [Trichosanthes kirilowii] >YP_009751656.1 NADH dehydrogenase subunit J [Hodgsonia heteroclita] >YP_009752246.1 NADH dehydrogenase subunit J [Trichosanthes baviensis] >YP_009752415.1 NADH dehydrogenase subunit J [Trichosanthes tricuspidata] >YP_009753623.1 NADH dehydrogenase subunit J [Trichosanthes wallichiana] >YP_009753708.1 NADH dehydrogenase subunit J [Trichosanthes nervifolia] >YP_009753792.1 NADH dehydrogenase subunit J [Trichosanthes pilosa] >YP_009753877.1 NADH dehydrogenase subunit J [Trichosanthes lobata] >AXR94527.1 NADH-plastoquinone oxidoreductase subunit J [Hodgsonia macrocarpa] >AXR94613.1 NADH-plastoquinone oxidoreductase subunit J [Hodgsonia macrocarpa] >AXR94697.1 NADH-plastoquinone oxidoreductase subunit J [Hodgsonia macrocarpa] >AXR94782.1 NADH-plastoquinone oxidoreductase subunit J [Hodgsonia macrocarpa] >QAB33193.1 NdhJ [Trichosanthes kirilowii])

HSP 1 Score: 184.5 bits (467), Expect = 6.7e-43
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 14  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 73
           APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG
Sbjct: 60  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 119

Query: 74  ISYDNHPRLKRILMPESWVGWPL 97
           ISYDNHPRLKRILMPESWVGWPL
Sbjct: 120 ISYDNHPRLKRILMPESWVGWPL 142

[Close]

BLAST of CcUC06G118860 vs. NCBI nr
Match: QHB75966.1 (NADH-plastoquinone oxidoreductase subunit J [Cucumis melo subsp. melo])

HSP 1 Score: 184.5 bits (467), Expect = 6.7e-43
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 14  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 73
           APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG
Sbjct: 60  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 119

Query: 74  ISYDNHPRLKRILMPESWVGWPL 97
           ISYDNHPRLKRILMPESWVGWPL
Sbjct: 120 ISYDNHPRLKRILMPESWVGWPL 142

[Close]

BLAST of CcUC06G118860 vs. ExPASy Swiss-Prot
Match: Q4VZH2 (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.3e-45
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 14  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 73
           APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG
Sbjct: 60  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 119

Query: 74  ISYDNHPRLKRILMPESWVGWPL 97
           I YDNHPRLKRILMPESWVGWPL
Sbjct: 120 IYYDNHPRLKRILMPESWVGWPL 142

[Close]

BLAST of CcUC06G118860 vs. ExPASy Swiss-Prot
Match: Q0ZJ17 (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Vitis vinifera OX=29760 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.8e-43
Identity = 78/83 (93.98%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 14  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 73
           APGGLLASVYHLTRIEYG+DQPEEVCIKVFA+R NPRIPSVFWVWKSADF ERESYDMLG
Sbjct: 60  APGGLLASVYHLTRIEYGVDQPEEVCIKVFASRRNPRIPSVFWVWKSADFQERESYDMLG 119

Query: 74  ISYDNHPRLKRILMPESWVGWPL 97
           ISYDNHPRLKRILMPESW+GWPL
Sbjct: 120 ISYDNHPRLKRILMPESWIGWPL 142

[Close]

BLAST of CcUC06G118860 vs. ExPASy Swiss-Prot
Match: B1A938 (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Carica papaya OX=3649 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.4e-43
Identity = 78/83 (93.98%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 14  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 73
           APGGLLASVYHLTRIEYG+DQPEEVCIKVFA R NPRIPSVFWVWKSADF ERESYDMLG
Sbjct: 60  APGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPRIPSVFWVWKSADFQERESYDMLG 119

Query: 74  ISYDNHPRLKRILMPESWVGWPL 97
           ISYDNHPRLKRILMPESW+GWPL
Sbjct: 120 ISYDNHPRLKRILMPESWIGWPL 142

[Close]

BLAST of CcUC06G118860 vs. ExPASy Swiss-Prot
Match: Q09G43 (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Platanus occidentalis OX=4403 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.4e-43
Identity = 77/83 (92.77%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 14  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 73
           APGGLLASVYHLTRI+YG+DQPEEVCIKVFAAR NPRIPSVFW+WKSADF ERESYDMLG
Sbjct: 60  APGGLLASVYHLTRIQYGVDQPEEVCIKVFAARRNPRIPSVFWIWKSADFQERESYDMLG 119

Query: 74  ISYDNHPRLKRILMPESWVGWPL 97
           ISYDNHPRLKRILMPESW+GWPL
Sbjct: 120 ISYDNHPRLKRILMPESWIGWPL 142

[Close]

BLAST of CcUC06G118860 vs. ExPASy Swiss-Prot
Match: Q06FV7 (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Pelargonium hortorum OX=4031 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 6.9e-43
Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 14  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 73
           APGGLLASVYH TRIEYGIDQPEEVCIKVF AR NPRIPS+FWVWKSADF ERESYDMLG
Sbjct: 60  APGGLLASVYHFTRIEYGIDQPEEVCIKVFLARSNPRIPSIFWVWKSADFQERESYDMLG 119

Query: 74  ISYDNHPRLKRILMPESWVGWPL 97
           ISYDNHPRLKRILMPESW+GWPL
Sbjct: 120 ISYDNHPRLKRILMPESWIGWPL 142

[Close]

BLAST of CcUC06G118860 vs. ExPASy TrEMBL
Match: A0A109WWM6 (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Gynostemma pentaphyllum OX=182084 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 3.2e-43
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 14  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 73
           APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG
Sbjct: 60  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 119

Query: 74  ISYDNHPRLKRILMPESWVGWPL 97
           ISYDNHPRLKRILMPESWVGWPL
Sbjct: 120 ISYDNHPRLKRILMPESWVGWPL 142

[Close]

BLAST of CcUC06G118860 vs. ExPASy TrEMBL
Match: A0A6H0EQB7 (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Indofevillea khasiana OX=383665 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 3.2e-43
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 14  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 73
           APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG
Sbjct: 60  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 119

Query: 74  ISYDNHPRLKRILMPESWVGWPL 97
           ISYDNHPRLKRILMPESWVGWPL
Sbjct: 120 ISYDNHPRLKRILMPESWVGWPL 142

[Close]

BLAST of CcUC06G118860 vs. ExPASy TrEMBL
Match: A0A2Z2CGF1 (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Coccinia grandis OX=387127 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 3.2e-43
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 14  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 73
           APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG
Sbjct: 60  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 119

Query: 74  ISYDNHPRLKRILMPESWVGWPL 97
           ISYDNHPRLKRILMPESWVGWPL
Sbjct: 120 ISYDNHPRLKRILMPESWVGWPL 142

[Close]

BLAST of CcUC06G118860 vs. ExPASy TrEMBL
Match: X2F417 (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Lagenaria siceraria OX=3668 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 3.2e-43
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 14  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 73
           APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG
Sbjct: 60  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 119

Query: 74  ISYDNHPRLKRILMPESWVGWPL 97
           ISYDNHPRLKRILMPESWVGWPL
Sbjct: 120 ISYDNHPRLKRILMPESWVGWPL 142

[Close]

BLAST of CcUC06G118860 vs. ExPASy TrEMBL
Match: A0A346QNL2 (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Hodgsonia macrocarpa OX=2184935 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 3.2e-43
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 14  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 73
           APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG
Sbjct: 60  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 119

Query: 74  ISYDNHPRLKRILMPESWVGWPL 97
           ISYDNHPRLKRILMPESWVGWPL
Sbjct: 120 ISYDNHPRLKRILMPESWVGWPL 142

[Close]

BLAST of CcUC06G118860 vs. TAIR 10
Match: ATCG00420.1 (NADH dehydrogenase subunit J )

HSP 1 Score: 164.9 bits (416), Expect = 5.1e-41
Identity = 72/83 (86.75%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 14  APGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWKSADFPERESYDMLG 73
           APGGLLASVYHLTRIEYG++Q EEVCIKVF  R NPRIPSVFWVWKS DF ERESYDMLG
Sbjct: 60  APGGLLASVYHLTRIEYGVNQAEEVCIKVFTHRSNPRIPSVFWVWKSTDFQERESYDMLG 119

Query: 74  ISYDNHPRLKRILMPESWVGWPL 97
           I+YD+HPRLKRILMPESW+GWPL
Sbjct: 120 ITYDSHPRLKRILMPESWIGWPL 142

[Close]

BLAST of CcUC06G118860 vs. TAIR 10
Match: ATMG00070.1 (NADH dehydrogenase subunit 9 )

HSP 1 Score: 42.7 bits (99), Expect = 2.9e-04
Identity = 28/83 (33.73%), Postives = 38/83 (45.78%), Query Frame = 0


Query: 31  GIDQPE-----EVCIKVFAARIN------------PRIPSVFWVWKSADFPERESYDMLG 90
           G+D P      EV   + + R N             RI  V  ++ SA   ERE +DM G
Sbjct: 61  GVDHPSRKRRFEVVYNLLSTRYNSRIRVQTSADEVTRISPVVSLFPSAGRWEREVWDMFG 120

Query: 91  ISYDNHPRLKRILMPESWVGWPL 97
           +S+ NHP L+RI     + G PL
Sbjct: 121 VSFINHPDLRRISTDYGFEGHPL 143

The following BLAST results are available for this feature:

BLAST of CcUC06G118860 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009751741.1	6.7e-43	100.00	NADH dehydrogenase subunit J [Herpetospermum pedunculosum] >QIT04474.1 NADH dehy...	[more]
ABS88047.1	6.7e-43	100.00	NADH dehydrogenase subunit J, partial [Lagenaria sphaerica] >ABS88048.1 NADH deh...	[more]
YP_009236283.1	6.7e-43	100.00	NADH-plastoquinone oxidoreductase subunit J [Gynostemma pentaphyllum] >YP_009317...	[more]
YP_009525189.1	6.7e-43	100.00	NADH-plastoquinone oxidoreductase subunit J [Hodgsonia macrocarpa] >YP_009560838...	[more]
QHB75966.1	6.7e-43	100.00	NADH-plastoquinone oxidoreductase subunit J [Cucumis melo subsp. melo]	[more]

BLAST of CcUC06G118860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZH2	4.3e-45	98.80	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Cucumis sativus OX=36...	[more]
Q0ZJ17	1.8e-43	93.98	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Vitis vinifera OX=297...	[more]
B1A938	2.4e-43	93.98	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Carica papaya OX=3649...	[more]
Q09G43	2.4e-43	92.77	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Platanus occidentalis...	[more]
Q06FV7	6.9e-43	92.77	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Pelargonium hortorum ...	[more]

BLAST of CcUC06G118860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A109WWM6	3.2e-43	100.00	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Gynostemma pentaphyll...	[more]
A0A6H0EQB7	3.2e-43	100.00	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Indofevillea khasiana...	[more]
A0A2Z2CGF1	3.2e-43	100.00	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Coccinia grandis OX=3...	[more]
X2F417	3.2e-43	100.00	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Lagenaria siceraria O...	[more]
A0A346QNL2	3.2e-43	100.00	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Hodgsonia macrocarpa ...	[more]

BLAST of CcUC06G118860 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00420.1	5.1e-41	86.75	NADH dehydrogenase subunit J	[more]
ATMG00070.1	2.9e-04	33.73	NADH dehydrogenase subunit 9	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037232	NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily	GENE3D	3.30.460.80	NADH:ubiquinone oxidoreductase, 30kDa subunit	coord: 6..84 e-value: 1.5E-18 score: 69.4
IPR037232	NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily	SUPERFAMILY	143243	Nqo5-like	coord: 15..96
IPR001268	NADH:ubiquinone oxidoreductase, 30kDa subunit	PFAM	PF00329	Complex1_30kDa	coord: 19..97 e-value: 4.0E-23 score: 82.3
None	No IPR available	PANTHER	PTHR10884:SF18	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT J, CHLOROPLASTIC	coord: 12..98
None	No IPR available	PANTHER	PTHR10884	NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3	coord: 12..98
IPR020396	NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site	PROSITE	PS00542	COMPLEX1_30K	coord: 65..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC06G118860.1	CcUC06G118860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0048038	quinone binding
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H