Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCTTATAATTCTTCAGCCGTTTGTTCTTTGAGCTGCCATGAACTCCCAGTCGATGTTCTTCATCTTATTTTGAACAAATTATCCACATTTTCCGATCAAATTAGTTTCCAATTCGTGTGTAGACATTGGTACTACGTAGCTCAACAACAAAAACCTCAAAAACTCCCTTTCCTTTTAATACCCAAGAATTTTCCAAACCAACCATGTTTATACGATCTCAATACTCAAGCATATGTCCCAAACACAACCCTTCATTGGAACCACAACATTATCCCACAACGTTTCTGTGGATCTTCCTTTGGTTGGTTGGCTTTCACCGACAAATCCAACCTCTATTTCATCAATCCCTTCCTCTCCCAAACCCTAACCCTCCCACTCCCTCCCGGCACCGCCCTCGCCCCCAATGTTCCCCCCGACCGCACCGTTCTCAAAGCTATATTCTCCAAAAACCCCACATTGTTCCCGAACGATTACGCCGTCGTTGCCATTCATTACAAATCCTTGAAGTTATCCTACTTCAAACACGGTGCACCCGGGTGGGTTGAAATACTACACCAAGACATCCTCCGCCCTTTCGCGGATGTCATCATGTCCAAAGGACGCGTGTACGCAGTTAGCCACTTTGGAGGACTTGGGGTTTTTGATATCGACAAAGAAGAATTGCACGTCGTCGTTCCCAACGGGGACGAGATGGGGTATGTTCATGCAGCTCACCTCGTAGAGTCGTCCCGAGGCAAGTTATTGCAAGTTCGGAGATTTATGTCTTTTTTGTCTACGACTTATCAATTTGATGTGTTTGTTCTTGAGGAATTAGGTGGTGGAAAGATGATGAGATGGATTAGGGTGAAGAGTTTAGGAGAAGATGCATTGTTTTTGGGGGTTAATGATTCAATATCAATTAATTTAGCTTCTAACAATAATAATAATAATAATAATAATTGTGAACCTAATTGCATATATTACACAGATAGCTATCACAGACGAAGCCAAGAATCATGCAAACAAAAATCAAAAATAGATATGGGACTCTACAAGTTGGGTTCAAACTTCTTCAGTGATCGGTTTAAAGATTTACGAGATGAATACTTGCCACCTCCCATTTGGATTCAACCTTTTTAA
mRNA sequence
ATGTCTTCTTATAATTCTTCAGCCGTTTGTTCTTTGAGCTGCCATGAACTCCCAGTCGATGTTCTTCATCTTATTTTGAACAAATTATCCACATTTTCCGATCAAATTAGTTTCCAATTCGTGTGTAGACATTGGTACTACGTAGCTCAACAACAAAAACCTCAAAAACTCCCTTTCCTTTTAATACCCAAGAATTTTCCAAACCAACCATGTTTATACGATCTCAATACTCAAGCATATGTCCCAAACACAACCCTTCATTGGAACCACAACATTATCCCACAACGTTTCTGTGGATCTTCCTTTGGTTGGTTGGCTTTCACCGACAAATCCAACCTCTATTTCATCAATCCCTTCCTCTCCCAAACCCTAACCCTCCCACTCCCTCCCGGCACCGCCCTCGCCCCCAATGTTCCCCCCGACCGCACCGTTCTCAAAGCTATATTCTCCAAAAACCCCACATTGTTCCCGAACGATTACGCCGTCGTTGCCATTCATTACAAATCCTTGAAGTTATCCTACTTCAAACACGGTGCACCCGGGTGGGTTGAAATACTACACCAAGACATCCTCCGCCCTTTCGCGGATGTCATCATGTCCAAAGGACGCGTGTACGCAGTTAGCCACTTTGGAGGACTTGGGGTTTTTGATATCGACAAAGAAGAATTGCACGTCGTCGTTCCCAACGGGGACGAGATGGGGTATGTTCATGCAGCTCACCTCGTAGAGTCGTCCCGAGGCAAGTTATTGCAAGTTCGGAGATTTATGTCTTTTTTGTCTACGACTTATCAATTTGATGTGTTTGTTCTTGAGGAATTAGGTGGTGGAAAGATGATGAGATGGATTAGGGTGAAGAGTTTAGGAGAAGATGCATTGTTTTTGGGGGTTAATGATTCAATATCAATTAATTTAGCTTCTAACAATAATAATAATAATAATAATAATTGTGAACCTAATTGCATATATTACACAGATAGCTATCACAGACGAAGCCAAGAATCATGCAAACAAAAATCAAAAATAGATATGGGACTCTACAAGTTGGGTTCAAACTTCTTCAGTGATCGGTTTAAAGATTTACGAGATGAATACTTGCCACCTCCCATTTGGATTCAACCTTTTTAA
Coding sequence (CDS)
ATGTCTTCTTATAATTCTTCAGCCGTTTGTTCTTTGAGCTGCCATGAACTCCCAGTCGATGTTCTTCATCTTATTTTGAACAAATTATCCACATTTTCCGATCAAATTAGTTTCCAATTCGTGTGTAGACATTGGTACTACGTAGCTCAACAACAAAAACCTCAAAAACTCCCTTTCCTTTTAATACCCAAGAATTTTCCAAACCAACCATGTTTATACGATCTCAATACTCAAGCATATGTCCCAAACACAACCCTTCATTGGAACCACAACATTATCCCACAACGTTTCTGTGGATCTTCCTTTGGTTGGTTGGCTTTCACCGACAAATCCAACCTCTATTTCATCAATCCCTTCCTCTCCCAAACCCTAACCCTCCCACTCCCTCCCGGCACCGCCCTCGCCCCCAATGTTCCCCCCGACCGCACCGTTCTCAAAGCTATATTCTCCAAAAACCCCACATTGTTCCCGAACGATTACGCCGTCGTTGCCATTCATTACAAATCCTTGAAGTTATCCTACTTCAAACACGGTGCACCCGGGTGGGTTGAAATACTACACCAAGACATCCTCCGCCCTTTCGCGGATGTCATCATGTCCAAAGGACGCGTGTACGCAGTTAGCCACTTTGGAGGACTTGGGGTTTTTGATATCGACAAAGAAGAATTGCACGTCGTCGTTCCCAACGGGGACGAGATGGGGTATGTTCATGCAGCTCACCTCGTAGAGTCGTCCCGAGGCAAGTTATTGCAAGTTCGGAGATTTATGTCTTTTTTGTCTACGACTTATCAATTTGATGTGTTTGTTCTTGAGGAATTAGGTGGTGGAAAGATGATGAGATGGATTAGGGTGAAGAGTTTAGGAGAAGATGCATTGTTTTTGGGGGTTAATGATTCAATATCAATTAATTTAGCTTCTAACAATAATAATAATAATAATAATAATTGTGAACCTAATTGCATATATTACACAGATAGCTATCACAGACGAAGCCAAGAATCATGCAAACAAAAATCAAAAATAGATATGGGACTCTACAAGTTGGGTTCAAACTTCTTCAGTGATCGGTTTAAAGATTTACGAGATGAATACTTGCCACCTCCCATTTGGATTCAACCTTTTTAA
Protein sequence
MSSYNSSAVCSLSCHELPVDVLHLILNKLSTFSDQISFQFVCRHWYYVAQQQKPQKLPFLLIPKNFPNQPCLYDLNTQAYVPNTTLHWNHNIIPQRFCGSSFGWLAFTDKSNLYFINPFLSQTLTLPLPPGTALAPNVPPDRTVLKAIFSKNPTLFPNDYAVVAIHYKSLKLSYFKHGAPGWVEILHQDILRPFADVIMSKGRVYAVSHFGGLGVFDIDKEELHVVVPNGDEMGYVHAAHLVESSRGKLLQVRRFMSFLSTTYQFDVFVLEELGGGKMMRWIRVKSLGEDALFLGVNDSISINLASNNNNNNNNNCEPNCIYYTDSYHRRSQESCKQKSKIDMGLYKLGSNFFSDRFKDLRDEYLPPPIWIQPF
Homology
BLAST of Sed0008086 vs. NCBI nr
Match:
KAE8100779.1 (hypothetical protein FH972_018639 [Carpinus fangiana])
HSP 1 Score: 163.3 bits (412), Expect = 4.0e-36
Identity = 123/370 (33.24%), Postives = 188/370 (50.81%), Query Frame = 0
Query: 17 LPVDVLHLILNKLSTFSDQISFQFVCRHWYYVAQQQKPQ--KLPFLLIPK--NFPNQPCL 76
LP D+LH +L+KL++ D++ F VC+ W +++ Q ++P LL+P N L
Sbjct: 14 LPTDLLHCVLHKLASPIDKVRFAAVCKSWGTQVKERPRQGTQIPMLLVPNKHNIYKARSL 73
Query: 77 YDLNTQAYVPNTTLHWNHNIIPQRFCGSSFGWLAF-TDKSNLYFINPFLSQTLTLPLPPG 136
Y + Q + + L +N +R CGSSFGWL+F T+ S++ NPF ++ + LP
Sbjct: 74 YSITDQT-ISDVNLPVPYN--SRRCCGSSFGWLSFVTNTSSITLFNPFRNKKIRLPKLQK 133
Query: 137 TALAPNVPPDRTVLKAIFSKNP-TLFPNDYAVVAIHYKSLKLSYFKHGAPGWVEILHQDI 196
+ TV K S +P TL + VVAI+ + L++ K G W ++ D+
Sbjct: 134 LRGYTTIGKQYTVEKVTLSSDPTTLEDSGCLVVAIYGEFNHLAFLKLGDESWTDV-DYDL 193
Query: 197 LRPFADVIMSKGRVYAVSHFGGLGVFDIDKEELHVVVPNGDEMGYVHAAHLVESSRGKLL 256
D++ KG+V A+ H G L D++ + E Y +LVE+S G LL
Sbjct: 194 QLVLGDILYYKGQVLAIDHRGELLSIDVNTNIKKTLASRDFE--YAPRTYLVETSVGDLL 253
Query: 257 QVRRFMSF-------LSTTYQFDVFVLE-ELGGGKMMRWIRVKSLGEDALFLGVNDSISI 316
VRRF + T F+V+ L + G++++W+ VK++G+DALFLG N SIS+
Sbjct: 254 LVRRFFTSWPFGVDNQGMTGHFEVYKLVLDKESGRVVKWVEVKNIGDDALFLGNNYSISV 313
Query: 317 NLASNNNNNNNNNCEPNCIYYTDSYHRRSQESCKQKSKIDMGLYKLGSNFFSDRFK-DLR 372
LAS + C PN IYYTD Y E IDMG++ L +K +
Sbjct: 314 -LAS-----AFSGCHPNSIYYTDDY--IDTEPYYPNGPIDMGIFNLEDRSVRLHYKPNPS 369
BLAST of Sed0008086 vs. NCBI nr
Match:
XP_008364231.2 (F-box protein At2g26160-like isoform X1 [Malus domestica] >XP_017185755.2 F-box protein At2g26160-like isoform X1 [Malus domestica] >XP_028958770.1 F-box protein At2g26160-like isoform X1 [Malus domestica] >XP_028958771.1 F-box protein At2g26160-like isoform X1 [Malus domestica] >RXH98713.1 hypothetical protein DVH24_011038 [Malus domestica])
HSP 1 Score: 158.3 bits (399), Expect = 1.3e-34
Identity = 132/405 (32.59%), Postives = 190/405 (46.91%), Query Frame = 0
Query: 17 LPVDVLHLILNKLSTFSDQISFQFVCRHWYYVAQQQK-------PQKLPFLLIPK--NFP 76
LP D+LHLI+ KL SD I F VC+HW VA QK Q+LP L+IP N
Sbjct: 16 LPSDLLHLIVEKLIPTSDYIRFGAVCKHWQSVALLQKQRRLKSHQQQLPMLIIPSKDNIN 75
Query: 77 NQPCLYDL------NTQAYVPNTTLHWNHNIIPQRFCGSSFGWLA-FTDKSNLYFINPFL 136
++ LY + + YVP R CGSS GWLA D + NPF+
Sbjct: 76 DRRGLYSVMHGKNCGFELYVPYN----------NRCCGSSHGWLACVNDNFGVNLFNPFI 135
Query: 137 SQTLTLPLPPGTALAPNVPP-----DRTVLKAIFSKNPTLFPNDYAVVAI-HYKSLKLSY 196
+T+ LPP T + ++ D + K + S +P+L PNDY VVA+ ++++
Sbjct: 136 KRTIL--LPPVTKVPQDIRKHAYRRDHYIKKVVLSADPSLCPNDYEVVALFDCNGTRIAH 195
Query: 197 FKHGAPGWVEI---------LHQDILRPFADVIMSKGRVYAVSHFGGLGVFDIDKEELH- 256
K G W I LHQ I F DV+ +G+ A S GG+ +I + H
Sbjct: 196 IKSGDNAWTHIDQTIRYFYGLHQII--GFDDVLYYRGQFLAASREGGVFSINISNDSTHK 255
Query: 257 -------VVVPNGDEMGYVHAAHLVESSRGKLLQVRRFMSF-----LSTTYQFDVFVLEE 316
+VP+ D+ Y LVESS+G LL VR+F S + F VF L
Sbjct: 256 PHVSIVLPIVPSIDDKAY-----LVESSQGDLLLVRKFQSLNYSECFIENFSFKVFKLFS 315
Query: 317 LGGGKM-MRWI-RVKSLGEDALFLGVNDSISINLASNNNNNNNNNCEPNCIYYTDSYHRR 374
GG+ WI ++S+G+DA F+G N SI ++ ++ C+PN IY+ R
Sbjct: 316 ASGGRTGPEWIEEIESIGDDAFFMGDNQSICVSA------SDFPGCQPNSIYFCID-DRV 375
BLAST of Sed0008086 vs. NCBI nr
Match:
XP_008234257.1 (PREDICTED: F-box protein At2g26160-like [Prunus mume])
HSP 1 Score: 158.3 bits (399), Expect = 1.3e-34
Identity = 126/403 (31.27%), Postives = 196/403 (48.64%), Query Frame = 0
Query: 17 LPVDVLHLILNKLSTFSDQISFQFVCRHWYYVAQQQKPQK-------LPFLLIP--KNFP 76
LP ++L LIL KL SD I F VC+HW VA +K Q+ +P L+IP N
Sbjct: 14 LPSNILDLILEKLIPISDYIRFSAVCKHWQSVALYRKKQRIKSCHKQIPMLIIPTIDNSS 73
Query: 77 NQPCLYDLNTQAYVPNTTLHWNHNIIPQRFCGSSFGWLAFTDKSNLY-FINPFLSQTLTL 136
+ LY + TQ + L+ ++ +RFCGSS GWLA D++ + +NPF T++L
Sbjct: 74 ERRGLYSV-TQGKTCSFELNVYYS---KRFCGSSHGWLACVDENLVVTLLNPFTGCTISL 133
Query: 137 PLPPGTALAPNVP--PDRTVLKAIFSKNPTLFPNDYAVVAIH-YKSLKLSYFKHGAPGWV 196
P P + V D + K + S +P+ PNDY V+ I+ ++++FK G W
Sbjct: 134 PPVPKSTWRSTVAYRCDYYINKVVLSADPSFLPNDYEVLVIYDGYGKQIAHFKSGDDAWT 193
Query: 197 EILHQDILRPFADVIMSKGRVYAVSHFGGLGVFDIDKEEL---HVVVPNGDEMGYVHAAH 256
I D + F DVI KG+ AVS G + ++ +++ HV + + G + +
Sbjct: 194 SI---DQMIGFDDVIYYKGQFLAVSLGGSVFSMNVSRDQTTKPHVSLLVPMDPGTDNKTY 253
Query: 257 LVESSRGKLLQVR---------RFMSFLSTT-YQFDVFVLEELGG--------------- 316
LV+SS+G LL VR RFM L+ ++F+ E++ G
Sbjct: 254 LVQSSKGDLLLVRKFKRVNYCKRFMKSLNLKFFKFERLNFEQVNGYDRFTETLSFKVFKL 313
Query: 317 ----GKMMRWIRVKSLGEDALFLGVNDSISINLASNNNNNNNNNCEPNCIYYTDSYHRRS 374
G+ +W+ ++S+G +ALFLG N S+ ++ C+PN IY+TD
Sbjct: 314 FCAHGERPQWVEIESIGNEALFLGTNQSMCVSAL------EFPGCQPNSIYFTDDC--VD 373
BLAST of Sed0008086 vs. NCBI nr
Match:
KAB2634531.1 (F-box protein [Pyrus ussuriensis x Pyrus communis])
HSP 1 Score: 157.5 bits (397), Expect = 2.2e-34
Identity = 131/399 (32.83%), Postives = 190/399 (47.62%), Query Frame = 0
Query: 17 LPVDVLHLILNKLSTFSDQISFQFVCRHWYYVAQQQK-------PQKLPFLLIPK--NFP 76
LP D+L+LI+ KL SD I F VC+HW VA QK Q+LP L+IP N
Sbjct: 28 LPSDLLYLIVEKLIPTSDYIRFGAVCKHWQSVALLQKQRRLKSRQQQLPMLIIPSKDNIN 87
Query: 77 NQPCLYDLNTQAYVPNTTLHWNHNIIPQRFCGSSFGWLA-FTDKSNLYFINPFLSQTLTL 136
++ LY + T L+ +N R CGSS GWLA D + NPF T+
Sbjct: 88 DRRGLYSV-THGKNCGFELYVPYN---NRCCGSSHGWLACVNDNFGVNLFNPFTKHTIL- 147
Query: 137 PLPPGTALAPNVPP-----DRTVLKAIFSKNPTLFPNDYAVVAI-HYKSLKLSYFKHGAP 196
LPP T + ++ D + K + S +P+LFPNDY VVA+ ++++ K G
Sbjct: 148 -LPPLTEVPQDIRKHAYRRDHYIKKVVLSADPSLFPNDYEVVALFDCHGTRMAHIKSGDN 207
Query: 197 GWVEI---------LHQDILRPFADVIMSKGRVYAVSHFGGLGVFDIDKEELH------- 256
W I LHQ I F DV+ +G+ AVS GG+ ++ H
Sbjct: 208 AWTHIDQTIRYFYGLHQII--GFDDVLYYRGQFLAVSREGGVFSINVSNGSTHKPHVSIV 267
Query: 257 -VVVPNGDEMGYVHAAHLVESSRGKLLQVRRFMSF-----LSTTYQFDVFVLEELGGGKM 316
+VP+ D+ Y LVESS+G LL VR+F S + F VF L GG+
Sbjct: 268 LPIVPSIDDKAY-----LVESSQGDLLLVRKFQSLNYNECFIENFSFKVFNLFSASGGRT 327
Query: 317 -MRWIR-VKSLGEDALFLGVNDSISINLASNNNNNNNNNCEPNCIYYTDSYHRRSQESCK 374
WI+ ++S+G+DA F+G N S+ ++ +N C+PN IY+ +
Sbjct: 328 GPEWIQEIESIGDDAFFIGDNQSMCVSA------SNFPGCQPNSIYFCID----DWVGVE 387
BLAST of Sed0008086 vs. NCBI nr
Match:
GFS32129.1 (calcium-dependent lipid-binding (CaLB domain) family protein [Actinidia rufa])
HSP 1 Score: 157.1 bits (396), Expect = 2.9e-34
Identity = 120/376 (31.91%), Postives = 179/376 (47.61%), Query Frame = 0
Query: 17 LPVDVLHLILNKLSTFSDQISFQFVCRHWYYVAQQQKP-------------QKLPFLLI- 76
L ++L I KL FSD I F VC +W VA + KLP L+I
Sbjct: 11 LSQNLLASIEEKLGQFSDFIRFIAVCGNWRLVALENNSSHKHRLNILKACHNKLPMLMIE 70
Query: 77 -PKNFPNQPCLYDLNTQAYVPNTTLHWNHNIIPQRFCGSSFGWLAFTDKSNLY-FINPFL 136
+N P + L+ + T+ L N RF SS GWL DK+ + +NPF
Sbjct: 71 TKENHPEKRVLFSV-TEGITYEVQLPLPCN---NRFFSSSVGWLFTIDKTIIITLLNPFT 130
Query: 137 SQTLTLPLPPGTALA----PNVPPDRTVLKAIFSKNPTLFPNDYAVVAIHYKSLKLSYFK 196
+ +TLP+ + + PD V+K I S +P L PN+Y VV I+ +L++F+
Sbjct: 131 NGVVTLPVLYDPLMEFLVWLDTQPDYFVVKGILSSDPLLNPNNYEVVVIYRGMRRLAFFR 190
Query: 197 HGAPGWVEILHQDILRPFADVIMSKGRVYAVSHFGGLGVFDIDKEELHVVVPNGDEMGYV 256
G W ++ + F D+I KG+V+ V +G L ++ + V G +
Sbjct: 191 SGNDSW-SFINLEQYYVFVDIIYHKGQVFGVDSWGKLVRIEVASGGTNYRVMIGRDNYCA 250
Query: 257 HAAHLVESSRGKLLQVRRFMSFLSTTYQFDVF-VLEELGGGKMMRWIRVKSLGEDALFLG 316
A+LVES G LL V+RF TY+F+VF ++ +G W VK++G+ ALFLG
Sbjct: 251 QVAYLVESQEGDLLMVQRFWK-NRKTYEFEVFKLVYRIGEAHEAVWAHVKNIGDQALFLG 310
Query: 317 VNDSISINLASNNNNNNNNNCEPNCIYYTDSYHRRSQESCKQKSKIDMGLYKL-GSNFFS 371
N S+S+ + C+PNCIYYTD H R+ D G++ L +F S
Sbjct: 311 DNHSVSV------STMEFPGCQPNCIYYTDQNHNRNPPYAYHGVDDDSGVFNLENGSFHS 370
BLAST of Sed0008086 vs. ExPASy Swiss-Prot
Match:
Q3EBZ2 (F-box protein SKIP23 OS=Arabidopsis thaliana OX=3702 GN=SKIP23 PE=1 SV=1)
HSP 1 Score: 48.5 bits (114), Expect = 1.9e-04
Identity = 89/411 (21.65%), Postives = 158/411 (38.44%), Query Frame = 0
Query: 17 LPVDVLHLILNKLSTFSDQISFQFVCRHWYYVAQQQKPQKLPFL-LIPKN----FPNQPC 76
LP D+L LI L + D I F+ VC W A+ + P L ++P N FP+
Sbjct: 7 LPKDLLDLISKSLESSFDLIQFRSVCSSWRSAAEPKSPLPTHHLPILPDNGGSLFPDSAV 66
Query: 77 LYDLNTQAYVPNTTLHWNHNIIPQRFC--GSSFGWLAFTDKSNLYFINPFLSQTLTLPL- 136
+ L+ ++ + I P C SFGWL ++ +N TL PL
Sbjct: 67 GFRLSQRSIL---------LIKPHEPCIESDSFGWLIKVEED----LNVPRKVTLLDPLC 126
Query: 137 PPGTALAPNVP-----------------------PDRTVLKAIFSKNPTL----FPNDYA 196
++ N P ++++++ + + DY
Sbjct: 127 DTRNSIPENFPRVLDMSKFKVRELGREFKLHYFNTVGDIVESLYLEKAVVKYLDCDGDYK 186
Query: 197 VVAIH-YKSLKLSYFKHGAPGWVEILHQDILRPFADVIMSKGRVYAVSHFGGLGVFDIDK 256
V + + S KL+ F+ W I D+ P+ DV++ GR +AV + G V D
Sbjct: 187 FVLLTIHVSGKLAVFRSWDRAWTVI--NDMPSPYDDVMLFDGRFFAVDNNGRTVVVDYSS 246
Query: 257 EELHVV---VPNGDEMGYVHAAHLVESSRGKLLQVRRFMS---------FLSTTYQFDVF 316
+L +V V GD+ L+ES G++L V ++S F+ ++ F
Sbjct: 247 LKLTLVASPVFGGDK------KFLIESC-GEMLLVDMYLSLEAVEGDPGFVEEIFEHPAF 306
Query: 317 VL-EELGGGKMMR-------WIRVKSLGEDALFLGVNDSISINLASNNNNNNNNNCEPNC 372
+ E K+ R W+ V L + LFLG + + S + ++ C+ +
Sbjct: 307 YMNERTVKFKVYRFVEREESWVDVYDLEDKMLFLGDDSTFSASA-----SDILPLCDGSS 366
BLAST of Sed0008086 vs. ExPASy TrEMBL
Match:
A0A5N6RR59 (DUF295 domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_018639 PE=4 SV=1)
HSP 1 Score: 163.3 bits (412), Expect = 1.9e-36
Identity = 123/370 (33.24%), Postives = 188/370 (50.81%), Query Frame = 0
Query: 17 LPVDVLHLILNKLSTFSDQISFQFVCRHWYYVAQQQKPQ--KLPFLLIPK--NFPNQPCL 76
LP D+LH +L+KL++ D++ F VC+ W +++ Q ++P LL+P N L
Sbjct: 14 LPTDLLHCVLHKLASPIDKVRFAAVCKSWGTQVKERPRQGTQIPMLLVPNKHNIYKARSL 73
Query: 77 YDLNTQAYVPNTTLHWNHNIIPQRFCGSSFGWLAF-TDKSNLYFINPFLSQTLTLPLPPG 136
Y + Q + + L +N +R CGSSFGWL+F T+ S++ NPF ++ + LP
Sbjct: 74 YSITDQT-ISDVNLPVPYN--SRRCCGSSFGWLSFVTNTSSITLFNPFRNKKIRLPKLQK 133
Query: 137 TALAPNVPPDRTVLKAIFSKNP-TLFPNDYAVVAIHYKSLKLSYFKHGAPGWVEILHQDI 196
+ TV K S +P TL + VVAI+ + L++ K G W ++ D+
Sbjct: 134 LRGYTTIGKQYTVEKVTLSSDPTTLEDSGCLVVAIYGEFNHLAFLKLGDESWTDV-DYDL 193
Query: 197 LRPFADVIMSKGRVYAVSHFGGLGVFDIDKEELHVVVPNGDEMGYVHAAHLVESSRGKLL 256
D++ KG+V A+ H G L D++ + E Y +LVE+S G LL
Sbjct: 194 QLVLGDILYYKGQVLAIDHRGELLSIDVNTNIKKTLASRDFE--YAPRTYLVETSVGDLL 253
Query: 257 QVRRFMSF-------LSTTYQFDVFVLE-ELGGGKMMRWIRVKSLGEDALFLGVNDSISI 316
VRRF + T F+V+ L + G++++W+ VK++G+DALFLG N SIS+
Sbjct: 254 LVRRFFTSWPFGVDNQGMTGHFEVYKLVLDKESGRVVKWVEVKNIGDDALFLGNNYSISV 313
Query: 317 NLASNNNNNNNNNCEPNCIYYTDSYHRRSQESCKQKSKIDMGLYKLGSNFFSDRFK-DLR 372
LAS + C PN IYYTD Y E IDMG++ L +K +
Sbjct: 314 -LAS-----AFSGCHPNSIYYTDDY--IDTEPYYPNGPIDMGIFNLEDRSVRLHYKPNPS 369
BLAST of Sed0008086 vs. ExPASy TrEMBL
Match:
A0A2N9FBD4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11976 PE=4 SV=1)
HSP 1 Score: 160.6 bits (405), Expect = 1.3e-35
Identity = 130/393 (33.08%), Postives = 191/393 (48.60%), Query Frame = 0
Query: 17 LPVDVLHLILNKLSTFSDQISFQFVCRHWYYV------AQQQKPQKLPFLLIP--KNFPN 76
LPV +L IL+KL D + F VC+ W+ V A+Q+ + LP L+IP K
Sbjct: 12 LPVPILCSILHKLPEPIDHLWFGAVCKQWHSVSKDCIQAKQRWNKLLPMLMIPTEKYTTT 71
Query: 77 QPCLYDL------NTQAYVPNTTLHWNHNIIPQRFCGSSFGWLAFTDK-SNLYFINPFLS 136
+ LY + N + VPN +RFCGS GWLA D+ S + +NPF
Sbjct: 72 ERRLYSVAEGKIYNVELRVPNC----------ERFCGSCLGWLATVDETSYVTLLNPF-K 131
Query: 137 QTLTLPLPPGTALAPNVPP-DRTVLKAIFSKNPTLFPNDYAVVAIHYKSLKLSYFKHGAP 196
+T+ LPP L P D + I S +P PNDY VVAI+ KL++ K G
Sbjct: 132 NGITIRLPPIDPLEPYYEGFDYYIYNFILSADPDSAPNDYVVVAIYDLYKKLAFIKAGDK 191
Query: 197 GWVEILHQDILRPFADVIMSKGRVYAVSHFGGLGVFDIDK--------EELHVVVPNGDE 256
W + + I +D+I G VYAVSH G + F++++ + ++ P +
Sbjct: 192 SWRHLNRESIPDMISDIIFYNGLVYAVSHRGLIVCFNVEEGNSIESELPKARILAPKMNP 251
Query: 257 MGYVHAAHLVESSRGKLLQVRRFMS-----FLSTTYQFDVFVLE-ELGGGKMMRWIRVKS 316
Y A+LVESS G LL V R + L T F V+ L + GK+M + ++S
Sbjct: 252 PTYSDRAYLVESSGGDLLYVHRKLDKNEDYRLQITNHFKVYKLRLDEQSGKVMERVELES 311
Query: 317 LGEDALFLGVNDSISINLASNNNNNNNNNCEPNCIYYTDSYHRRSQESCKQKSKI----D 374
LG+D LF+G N+S+S++ A N C+PN IY+T Y C ++ D
Sbjct: 312 LGDDTLFVGDNNSMSVSAA------NFPGCQPNSIYFTHDY-----IDCTGFNEFYRPHD 371
BLAST of Sed0008086 vs. ExPASy TrEMBL
Match:
A0A498JXM0 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_011038 PE=4 SV=1)
HSP 1 Score: 158.3 bits (399), Expect = 6.2e-35
Identity = 132/405 (32.59%), Postives = 190/405 (46.91%), Query Frame = 0
Query: 17 LPVDVLHLILNKLSTFSDQISFQFVCRHWYYVAQQQK-------PQKLPFLLIPK--NFP 76
LP D+LHLI+ KL SD I F VC+HW VA QK Q+LP L+IP N
Sbjct: 16 LPSDLLHLIVEKLIPTSDYIRFGAVCKHWQSVALLQKQRRLKSHQQQLPMLIIPSKDNIN 75
Query: 77 NQPCLYDL------NTQAYVPNTTLHWNHNIIPQRFCGSSFGWLA-FTDKSNLYFINPFL 136
++ LY + + YVP R CGSS GWLA D + NPF+
Sbjct: 76 DRRGLYSVMHGKNCGFELYVPYN----------NRCCGSSHGWLACVNDNFGVNLFNPFI 135
Query: 137 SQTLTLPLPPGTALAPNVPP-----DRTVLKAIFSKNPTLFPNDYAVVAI-HYKSLKLSY 196
+T+ LPP T + ++ D + K + S +P+L PNDY VVA+ ++++
Sbjct: 136 KRTIL--LPPVTKVPQDIRKHAYRRDHYIKKVVLSADPSLCPNDYEVVALFDCNGTRIAH 195
Query: 197 FKHGAPGWVEI---------LHQDILRPFADVIMSKGRVYAVSHFGGLGVFDIDKEELH- 256
K G W I LHQ I F DV+ +G+ A S GG+ +I + H
Sbjct: 196 IKSGDNAWTHIDQTIRYFYGLHQII--GFDDVLYYRGQFLAASREGGVFSINISNDSTHK 255
Query: 257 -------VVVPNGDEMGYVHAAHLVESSRGKLLQVRRFMSF-----LSTTYQFDVFVLEE 316
+VP+ D+ Y LVESS+G LL VR+F S + F VF L
Sbjct: 256 PHVSIVLPIVPSIDDKAY-----LVESSQGDLLLVRKFQSLNYSECFIENFSFKVFKLFS 315
Query: 317 LGGGKM-MRWI-RVKSLGEDALFLGVNDSISINLASNNNNNNNNNCEPNCIYYTDSYHRR 374
GG+ WI ++S+G+DA F+G N SI ++ ++ C+PN IY+ R
Sbjct: 316 ASGGRTGPEWIEEIESIGDDAFFMGDNQSICVSA------SDFPGCQPNSIYFCID-DRV 375
BLAST of Sed0008086 vs. ExPASy TrEMBL
Match:
A0A5N5I7N3 (F-box protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_039982 PE=4 SV=1)
HSP 1 Score: 157.5 bits (397), Expect = 1.1e-34
Identity = 131/399 (32.83%), Postives = 190/399 (47.62%), Query Frame = 0
Query: 17 LPVDVLHLILNKLSTFSDQISFQFVCRHWYYVAQQQK-------PQKLPFLLIPK--NFP 76
LP D+L+LI+ KL SD I F VC+HW VA QK Q+LP L+IP N
Sbjct: 28 LPSDLLYLIVEKLIPTSDYIRFGAVCKHWQSVALLQKQRRLKSRQQQLPMLIIPSKDNIN 87
Query: 77 NQPCLYDLNTQAYVPNTTLHWNHNIIPQRFCGSSFGWLA-FTDKSNLYFINPFLSQTLTL 136
++ LY + T L+ +N R CGSS GWLA D + NPF T+
Sbjct: 88 DRRGLYSV-THGKNCGFELYVPYN---NRCCGSSHGWLACVNDNFGVNLFNPFTKHTIL- 147
Query: 137 PLPPGTALAPNVPP-----DRTVLKAIFSKNPTLFPNDYAVVAI-HYKSLKLSYFKHGAP 196
LPP T + ++ D + K + S +P+LFPNDY VVA+ ++++ K G
Sbjct: 148 -LPPLTEVPQDIRKHAYRRDHYIKKVVLSADPSLFPNDYEVVALFDCHGTRMAHIKSGDN 207
Query: 197 GWVEI---------LHQDILRPFADVIMSKGRVYAVSHFGGLGVFDIDKEELH------- 256
W I LHQ I F DV+ +G+ AVS GG+ ++ H
Sbjct: 208 AWTHIDQTIRYFYGLHQII--GFDDVLYYRGQFLAVSREGGVFSINVSNGSTHKPHVSIV 267
Query: 257 -VVVPNGDEMGYVHAAHLVESSRGKLLQVRRFMSF-----LSTTYQFDVFVLEELGGGKM 316
+VP+ D+ Y LVESS+G LL VR+F S + F VF L GG+
Sbjct: 268 LPIVPSIDDKAY-----LVESSQGDLLLVRKFQSLNYNECFIENFSFKVFNLFSASGGRT 327
Query: 317 -MRWIR-VKSLGEDALFLGVNDSISINLASNNNNNNNNNCEPNCIYYTDSYHRRSQESCK 374
WI+ ++S+G+DA F+G N S+ ++ +N C+PN IY+ +
Sbjct: 328 GPEWIQEIESIGDDAFFIGDNQSMCVSA------SNFPGCQPNSIYFCID----DWVGVE 387
BLAST of Sed0008086 vs. ExPASy TrEMBL
Match:
A0A7J0DC68 (Calcium-dependent lipid-binding (CaLB domain) family protein OS=Actinidia rufa OX=165716 GN=Acr_00g0020960 PE=4 SV=1)
HSP 1 Score: 157.1 bits (396), Expect = 1.4e-34
Identity = 120/376 (31.91%), Postives = 179/376 (47.61%), Query Frame = 0
Query: 17 LPVDVLHLILNKLSTFSDQISFQFVCRHWYYVAQQQKP-------------QKLPFLLI- 76
L ++L I KL FSD I F VC +W VA + KLP L+I
Sbjct: 11 LSQNLLASIEEKLGQFSDFIRFIAVCGNWRLVALENNSSHKHRLNILKACHNKLPMLMIE 70
Query: 77 -PKNFPNQPCLYDLNTQAYVPNTTLHWNHNIIPQRFCGSSFGWLAFTDKSNLY-FINPFL 136
+N P + L+ + T+ L N RF SS GWL DK+ + +NPF
Sbjct: 71 TKENHPEKRVLFSV-TEGITYEVQLPLPCN---NRFFSSSVGWLFTIDKTIIITLLNPFT 130
Query: 137 SQTLTLPLPPGTALA----PNVPPDRTVLKAIFSKNPTLFPNDYAVVAIHYKSLKLSYFK 196
+ +TLP+ + + PD V+K I S +P L PN+Y VV I+ +L++F+
Sbjct: 131 NGVVTLPVLYDPLMEFLVWLDTQPDYFVVKGILSSDPLLNPNNYEVVVIYRGMRRLAFFR 190
Query: 197 HGAPGWVEILHQDILRPFADVIMSKGRVYAVSHFGGLGVFDIDKEELHVVVPNGDEMGYV 256
G W ++ + F D+I KG+V+ V +G L ++ + V G +
Sbjct: 191 SGNDSW-SFINLEQYYVFVDIIYHKGQVFGVDSWGKLVRIEVASGGTNYRVMIGRDNYCA 250
Query: 257 HAAHLVESSRGKLLQVRRFMSFLSTTYQFDVF-VLEELGGGKMMRWIRVKSLGEDALFLG 316
A+LVES G LL V+RF TY+F+VF ++ +G W VK++G+ ALFLG
Sbjct: 251 QVAYLVESQEGDLLMVQRFWK-NRKTYEFEVFKLVYRIGEAHEAVWAHVKNIGDQALFLG 310
Query: 317 VNDSISINLASNNNNNNNNNCEPNCIYYTDSYHRRSQESCKQKSKIDMGLYKL-GSNFFS 371
N S+S+ + C+PNCIYYTD H R+ D G++ L +F S
Sbjct: 311 DNHSVSV------STMEFPGCQPNCIYYTDQNHNRNPPYAYHGVDDDSGVFNLENGSFHS 370
BLAST of Sed0008086 vs. TAIR 10
Match:
AT2G17030.1 (F-box family protein with a domain of unknown function (DUF295) )
HSP 1 Score: 48.5 bits (114), Expect = 1.3e-05
Identity = 89/411 (21.65%), Postives = 158/411 (38.44%), Query Frame = 0
Query: 17 LPVDVLHLILNKLSTFSDQISFQFVCRHWYYVAQQQKPQKLPFL-LIPKN----FPNQPC 76
LP D+L LI L + D I F+ VC W A+ + P L ++P N FP+
Sbjct: 7 LPKDLLDLISKSLESSFDLIQFRSVCSSWRSAAEPKSPLPTHHLPILPDNGGSLFPDSAV 66
Query: 77 LYDLNTQAYVPNTTLHWNHNIIPQRFC--GSSFGWLAFTDKSNLYFINPFLSQTLTLPL- 136
+ L+ ++ + I P C SFGWL ++ +N TL PL
Sbjct: 67 GFRLSQRSIL---------LIKPHEPCIESDSFGWLIKVEED----LNVPRKVTLLDPLC 126
Query: 137 PPGTALAPNVP-----------------------PDRTVLKAIFSKNPTL----FPNDYA 196
++ N P ++++++ + + DY
Sbjct: 127 DTRNSIPENFPRVLDMSKFKVRELGREFKLHYFNTVGDIVESLYLEKAVVKYLDCDGDYK 186
Query: 197 VVAIH-YKSLKLSYFKHGAPGWVEILHQDILRPFADVIMSKGRVYAVSHFGGLGVFDIDK 256
V + + S KL+ F+ W I D+ P+ DV++ GR +AV + G V D
Sbjct: 187 FVLLTIHVSGKLAVFRSWDRAWTVI--NDMPSPYDDVMLFDGRFFAVDNNGRTVVVDYSS 246
Query: 257 EELHVV---VPNGDEMGYVHAAHLVESSRGKLLQVRRFMS---------FLSTTYQFDVF 316
+L +V V GD+ L+ES G++L V ++S F+ ++ F
Sbjct: 247 LKLTLVASPVFGGDK------KFLIESC-GEMLLVDMYLSLEAVEGDPGFVEEIFEHPAF 306
Query: 317 VL-EELGGGKMMR-------WIRVKSLGEDALFLGVNDSISINLASNNNNNNNNNCEPNC 372
+ E K+ R W+ V L + LFLG + + S + ++ C+ +
Sbjct: 307 YMNERTVKFKVYRFVEREESWVDVYDLEDKMLFLGDDSTFSASA-----SDILPLCDGSS 366
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAE8100779.1 | 4.0e-36 | 33.24 | hypothetical protein FH972_018639 [Carpinus fangiana] | [more] |
XP_008364231.2 | 1.3e-34 | 32.59 | F-box protein At2g26160-like isoform X1 [Malus domestica] >XP_017185755.2 F-box ... | [more] |
XP_008234257.1 | 1.3e-34 | 31.27 | PREDICTED: F-box protein At2g26160-like [Prunus mume] | [more] |
KAB2634531.1 | 2.2e-34 | 32.83 | F-box protein [Pyrus ussuriensis x Pyrus communis] | [more] |
GFS32129.1 | 2.9e-34 | 31.91 | calcium-dependent lipid-binding (CaLB domain) family protein [Actinidia rufa] | [more] |
Match Name | E-value | Identity | Description | |
Q3EBZ2 | 1.9e-04 | 21.65 | F-box protein SKIP23 OS=Arabidopsis thaliana OX=3702 GN=SKIP23 PE=1 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
A0A5N6RR59 | 1.9e-36 | 33.24 | DUF295 domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_018639 ... | [more] |
A0A2N9FBD4 | 1.3e-35 | 33.08 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11976 PE=4 SV=1 | [more] |
A0A498JXM0 | 6.2e-35 | 32.59 | Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_011038 PE=4 SV=1 | [more] |
A0A5N5I7N3 | 1.1e-34 | 32.83 | F-box protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_039982 P... | [more] |
A0A7J0DC68 | 1.4e-34 | 31.91 | Calcium-dependent lipid-binding (CaLB domain) family protein OS=Actinidia rufa O... | [more] |
Match Name | E-value | Identity | Description | |
AT2G17030.1 | 1.3e-05 | 21.65 | F-box family protein with a domain of unknown function (DUF295) | [more] |