Sed0013318.1 (mRNA) Chayote v1

Overview


Name	Sed0013318.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	serine/arginine-rich SC35-like splicing factor SCL30
Location	LG07: 40488007 .. 40492964 (-)
Sequence length	1231
RNA-Seq Expression	Sed0013318.1
Synteny	Sed0013318.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAAATGCTAAACCCTACGATGGAAGGCTTCTTGTTTCCAAGACTTCACAGATTCAGGTTTCTGAGTGGGGAATCTCTCTTTGCATTCTGTCATCTTCCTCATATTTTCCTCAGGTAAAATCATACAGTTCCGATCTCTGGTTTCTCCATTACGTTTCTGCGCATTATTCATTGTGCAAACCCTAATTTACTCGGAAGCTTGCAATTGTTGTTCGTAGCCAGTTTCCTTGTGTTTCGATAATTCGGAATCAGTCGTTTCGTTTTTTGAAATTTTACTCGTAGTTTGAACGATCCCTTTGCATTTACTTGCTATTTCCGTATACGATTTTCAAGACTTTGATATGTATATTAGAGTTTAGGTATCTGGAGTTTGGAAACGGGAAATTTATAGAGGTTTAACTGTCGAATTGGTAATTATGAGCCTGGGAAGTGTGGTTTAGGGTTTTACACTTGAAGCTGTTATCTGTTTGCTTGATTGTGTAGGCTGATTTGTGGGTTCCTTTGGTTTTTTTTTTTTTTTTGAAAGTTATTGATTTGAATGAGAAGAAATTTTGACGATTTGCATCCTTAATTGTAGATCTCACGTGGTAATTGTTTTGAATAGGTTGAAACATGAGAAGATACAGTCCTCTGTACCATAGTCCGCCAAGGAGAGGATATGGTGGTCCTGATCGAGGAAGAAGCCCTCCTAGGAGGGGTTACGGTGGCGGCGGTGGTGGCGGTGGTGGTTATGGAAGACGAAGGGAAGAAGCTCATGGTAGCCTTTTAGTTAGAAATATTCCTATGGATTGCAGGTCTGGATTTGGTCTTTTTTGTTTATGTTTTTTCATTCGAGTCATTTATGATATTGCTTTGTTCAGTTTAAGTTTCAGTACTTCTATTCTATTTTTTGAATTTGTTGTTTTCTTTCACTAATTTTTCACACTTTGGCTTCTGGTTGTACTTACGATTCTTGCAGGCCGGAGGAGCTTAGAGCTTCATTTGAGAGGTTTGGAATTGTTCGAGATGTGTATATTCCAAAGGATTTTTATTCAGGGTGAGTATCCGTTGTTTGTTTTCCACACTGCTCTGCTCATGGTATGCGATTAAATTTTTAGTTTTTTGACTGTTATTCACCTGATTCCTTAACACGGACTTTTACGTTCCTATGAGTTAAATTGACAGGGAAACATATTTTTTTATGGTCAATATCTGGACATTTGATTACCAAATTGCACATAAAATTCATGAAACTAACCTCAAGCGGGGTCCAGGGGGTAATTTTAGGTTTACTGGTTAAGCTTCAAACCAAACCTTGTGCATTAGAAATTAAGCCGGATTACTCACACAGTCACACTTGTTTGATGATCTTAATTCTTAGCCGTGTGACTTCATACGCAAGATGAAATAAACTTATGCATTAACTATTTTTTTTTTCTTTTTACTTTCTTTGAATCTTAATTTAAAAAACTATTTTTTTAACTTAATTAGTTCTTGAAGGGATGTACATTTCTGCACTAAGTTTTTAATTTATAGAGAAAATATTTAGAACATATGGAACATCTCGTCGAGTATGCTATTCATAGTTAGGCAATGGAGAGGATGAAAATGTCAACCAAAATTTCACCAGGCCTTTCTTTTTCTAGGTGAATTATATTCCCATTTCACAGTGTTAAATTTTTAACTGCTTTGTCAGGGGGCATATGGCTTGAACTTTGAAGTTAAAAAAGCCCAAACCCCTTTTAGTGAGGGTCTACTACTTTTCACTGCCTAACATATTGCACTTCAAGAATCTAAAGAGTAATATCGAAATGAGGGTGTCACTCGGAGATATTAGATAATTACCCCATCAATAGAAGTTGGTGAGCAAGATGATAGAGTTTTGAGCAATTGAAGCTAACTCTGTGAAGGTATTAAGGTTGTGGAATGTTTGTTCAAGTGCTTCGTGAGTTTCCAAGTATTTGAAGAATTTTCAAGTCATGAATTGTTGGTTTCAAGTACTTGTATCAAGAACTGGGAAGATTTTCCAAGTGAAATACGTTGAATTGAAGTGCTTATTAGTTACAAGAATATGAAGATTTTTCAAGTCTCTTGCCTCTTACATCTTGATTGTAAAGAGAAGGTTAGCTACTGAACTTTGAAACTAGTTGCTTTACGTAACTTCAGCTTCGGCTTTGAAGAAAACAGTCTGAAGTAACCATTGGATATGAAAGAAAGCTATTTAGTTATGGCATTCCAAATCCTTTTAGCCATAAAAAGTATACTCGTTTTATCATTCAGTCTAGTTACTCAAGAGTTTTGTCCAAAATGATATTCTTATTTTTCATCTTGAAAATTTTGTTTGATTTCTTTGTAGACAACCACGAGGATTTGCATTTGTGGAGTTTGTTGATCCCTATGAGGCTTCTGAAGCTCAGTATCATATGAATGGGAAAAAATTTGGTGGTAGGGAGATTATTGTGGTCCTGGCTGCAGAGTCAAGGAAGAGGCCGGAACAGATGCGCCAACGAAGTAGAAGGTAGTTTTTTGTTCGTTCTCTTTTACCTCATTTTTATCTATCATTACAGAATAGTGTACTTTTACAATCCACATGACCTGCCATAGACAGAAAGCAATCCATCTTGTGTGAAGGAGGAATCTAAAGCAATACAAAGATCCCTCTCTTCTCATTCACTTTGTTCAATGGAAAATAGCCTTTTATGAAGTTTATTTAGTTGCAAGTTGTGTTATACGATTCTATTTTTCTTTCTGTAGGGGCGGACCATCTGGCTATGGTGGACGTCGTTCTTATTATGGTATGGGTACTAGTAGTCTTTCTTTAAATTTGACGCATCTTTATATAAAAGTGAAAACCCCAACCAAAATAAAGAGTTTAGGAGACCTCTTATATTCAAAATTTTCATTTTTGTAGTTCATGCTACCTCTTGATTCTTTTCAAGAAGACTCTAGCATGACATCTTGTTATGGGACTCTTGAACACTACAGCTTTAGATGATGCAGTTATGCGATTTTTCCAATATGTTAGATTGCACTTGTATTATTTGTAATCTCAAAGTTATAAATGGTCATATAATACCGTTTTAATCAACTTTTTTTGTGTGTGTAATGAACTAAAGTTCCTCATGTTTTATGGATGAAGTTTGGTATTTGATTGAATCTTCAAACATTCTTTTCCTAGTTTGATGCTTCTTTTCTTTGGAGGCATTCTCTTGGCCTAGTGGTCAAGAGAGCATCGAGAAGCTAAGAATTTATGTTTCATTTGATCATAGAGAATTAATTTTCTACTGATTTTGTTTCTACAATTATTTGCTTCTGTTAGCCAAATGATAGTTTGTATTATGCAATTGTGAATTTTCAGTCCGGTGGTTTTTTCAATTGATTCAATGAAAAGTACAAACTTCCTCGATACACATCCTTAAGCTTGGAATCCAAATCATTCATTAACTATCGTACTAGACAAAATAAGTCTATATTGGATTACTGTATTCAATGATCAACGTGGTTTCAAGATGTAATTGATCATGACCTTTTTTTTGTTGAAAATATAGGGCGTTCTAGATCTCGTTCTTTATCTCGATCACGTTCCCCCCAGCATCCTTCAGGTTCAAGAAGTAGATATCGATCGAGGTAATCTATTTTAAACAGAATTTTCATATTTATTTATGTGTTAGATAGAGTAAATTTGCCTAATGTAATTGTCAGGTCCTACTCCCCTGCTCCGAGATGGCGTGGTGACTATTCGGTTTCCCCTAGTAGACGACATGCTGACTATCCCAGATCTCCAAGAGGTGCTCCTCGTGAGCGAGATGGTGAGAGGAGTCAGCAAGTATATTCTCCTGGATATGATGATACTGATGGTCACGATCACGATGGAAATGGATATCATGAGTAAGTTGAATGATTTACTAATGACTTTTTGCTTTTGGGGGCAACTTGAATATGCAACTATTTTTTAGTGTTTCTTGGTATCTGTTTGTGCATAAATTATTTTTTTAGTGTTTCTTGGAAATCGAAAAAATTGAAACTTCGTTCCACTATACCTGGGGTAACCGTCCCCAAGGGGTGGTACAGTGGTTGAAGACTTGGGATTTGAAGGTATGCTCCCTTTAAGGTCTCAGGTTCGAGATTCACCTGTGACATTACTTCTTCAATGTCTTCCGGTGCCCGCGAAGGGACTGGCGTAGTTACTCTTGTTTCAAAAAAAAAATATAACCGGGGTAACCATACCCATTCCTATGCTTGACACCAGGAGGCATCGAAGGAATAGAGATATGGAAGGTGTCTACAAATTAATTTGACAAGTGAGTCTCGAATTTGGGACTTTGAGGAGAGCACGTCTTCGATGTCCAAGCCTTCGACTACTACGCCACCCCTTAGAGACATGCATTGCTTATTTTTATTTTTGTTCTTTTTTGACAATCGGGAATCGGAACTTTATCGTGGTGGAAATCGTTATTTATTGTATACCCTAGTCTCATGTTTGAGAATTTACTCTGTTCCGTTTGTTTAATATCTTAACGTATCTATGTTTACCATTCTTGCATAAAAGTGTGTTCTGTGCTACTTTATTTATTCGTCAATCCCTTTTCTTTTCTTAGGAAGTCTGCATTTGGTGGAGAGGATGCACGAGCCAGCTGGAGGTCTTCTCCTGGTAGAAGGGCGTCTCCCGGTAGAATTTCAAGGTCCCCTTCCGGATCCCGATCCCGCTCTGCTGATGCGTCGCCAAGACCTGGTAGATAGATTTCTTTGAGAAAACATGGTAAGTAGATGATGTGAACCTTTGTTCCTAATATTTAAGATTTGTTACTCTTAAGTTAGAAACCACTATCCAAGTAACTATTTAAGATTGTATTTTGTGTTTCCCTATTTTCAAGACATGGCAATTTACTTTGCTCTCATTTGAAGCTTAAATTATTACATTATGGCAGACTATCCAACTTTCTGATACTTTTCTGGATTGTGCATGCTTTTCTTTTTC

mRNA sequence

ATAAAATGCTAAACCCTACGATGGAAGGCTTCTTGTTTCCAAGACTTCACAGATTCAGGTTTCTGAGTGGGGAATCTCTCTTTGCATTCTGTCATCTTCCTCATATTTTCCTCAGGTTGAAACATGAGAAGATACAGTCCTCTGTACCATAGTCCGCCAAGGAGAGGATATGGTGGTCCTGATCGAGGAAGAAGCCCTCCTAGGAGGGGTTACGGTGGCGGCGGTGGTGGCGGTGGTGGTTATGGAAGACGAAGGGAAGAAGCTCATGGTAGCCTTTTAGTTAGAAATATTCCTATGGATTGCAGGCCGGAGGAGCTTAGAGCTTCATTTGAGAGGTTTGGAATTGTTCGAGATGTGTATATTCCAAAGGATTTTTATTCAGGACAACCACGAGGATTTGCATTTGTGGAGTTTGTTGATCCCTATGAGGCTTCTGAAGCTCAGTATCATATGAATGGGAAAAAATTTGGTGGTAGGGAGATTATTGTGGTCCTGGCTGCAGAGTCAAGGAAGAGGCCGGAACAGATGCGCCAACGAAGTAGAAGGGGCGGACCATCTGGCTATGGTGGACGTCGTTCTTATTATGGGCGTTCTAGATCTCGTTCTTTATCTCGATCACGTTCCCCCCAGCATCCTTCAGGTTCAAGAAGTAGATATCGATCGAGGTCCTACTCCCCTGCTCCGAGATGGCGTGGTGACTATTCGGTTTCCCCTAGTAGACGACATGCTGACTATCCCAGATCTCCAAGAGGTGCTCCTCGTGAGCGAGATGGTGAGAGGAGTCAGCAAGTATATTCTCCTGGATATGATGATACTGATGGTCACGATCACGATGGAAATGGATATCATGAGAAGTCTGCATTTGGTGGAGAGGATGCACGAGCCAGCTGGAGGTCTTCTCCTGGTAGAAGGGCGTCTCCCGGTAGAATTTCAAGGTCCCCTTCCGGATCCCGATCCCGCTCTGCTGATGCGTCGCCAAGACCTGGTAGATAGATTTCTTTGAGAAAACATGGTAAGTAGATGATGTGAACCTTTGTTCCTAATATTTAAGATTTGTTACTCTTAAGTTAGAAACCACTATCCAAGTAACTATTTAAGATTGTATTTTGTGTTTCCCTATTTTCAAGACATGGCAATTTACTTTGCTCTCATTTGAAGCTTAAATTATTACATTATGGCAGACTATCCAACTTTCTGATACTTTTCTGGATTGTGCATGCTTTTCTTTTTC

Coding sequence (CDS)

ATGAGAAGATACAGTCCTCTGTACCATAGTCCGCCAAGGAGAGGATATGGTGGTCCTGATCGAGGAAGAAGCCCTCCTAGGAGGGGTTACGGTGGCGGCGGTGGTGGCGGTGGTGGTTATGGAAGACGAAGGGAAGAAGCTCATGGTAGCCTTTTAGTTAGAAATATTCCTATGGATTGCAGGCCGGAGGAGCTTAGAGCTTCATTTGAGAGGTTTGGAATTGTTCGAGATGTGTATATTCCAAAGGATTTTTATTCAGGACAACCACGAGGATTTGCATTTGTGGAGTTTGTTGATCCCTATGAGGCTTCTGAAGCTCAGTATCATATGAATGGGAAAAAATTTGGTGGTAGGGAGATTATTGTGGTCCTGGCTGCAGAGTCAAGGAAGAGGCCGGAACAGATGCGCCAACGAAGTAGAAGGGGCGGACCATCTGGCTATGGTGGACGTCGTTCTTATTATGGGCGTTCTAGATCTCGTTCTTTATCTCGATCACGTTCCCCCCAGCATCCTTCAGGTTCAAGAAGTAGATATCGATCGAGGTCCTACTCCCCTGCTCCGAGATGGCGTGGTGACTATTCGGTTTCCCCTAGTAGACGACATGCTGACTATCCCAGATCTCCAAGAGGTGCTCCTCGTGAGCGAGATGGTGAGAGGAGTCAGCAAGTATATTCTCCTGGATATGATGATACTGATGGTCACGATCACGATGGAAATGGATATCATGAGAAGTCTGCATTTGGTGGAGAGGATGCACGAGCCAGCTGGAGGTCTTCTCCTGGTAGAAGGGCGTCTCCCGGTAGAATTTCAAGGTCCCCTTCCGGATCCCGATCCCGCTCTGCTGATGCGTCGCCAAGACCTGGTAGATAG

Protein sequence

MRRYSPLYHSPPRRGYGGPDRGRSPPRRGYGGGGGGGGGYGRRREEAHGSLLVRNIPMDCRPEELRASFERFGIVRDVYIPKDFYSGQPRGFAFVEFVDPYEASEAQYHMNGKKFGGREIIVVLAAESRKRPEQMRQRSRRGGPSGYGGRRSYYGRSRSRSLSRSRSPQHPSGSRSRYRSRSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDDTDGHDHDGNGYHEKSAFGGEDARASWRSSPGRRASPGRISRSPSGSRSRSADASPRPGR

Homology

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BLAST of Sed0013318.1 vs. NCBI nr
Match: XP_022139086.1 (serine/arginine-rich SC35-like splicing factor SCL30 [Momordica charantia])

HSP 1 Score: 505.4 bits (1300), Expect = 3.3e-139
Identity = 263/289 (91.00%), Postives = 273/289 (94.46%), Query Frame = 0


Query: 1   MRRYSPLYHSPPRRGYGGPDRGRSPPRRGYGGGGGGGGGYGRRREEAHGSLLVRNIPMDC 60
           MRRYSP YHSPPRRGYGG  RGRSPP RGYGGGGGGGGGYGRRRE++HGSLLVRNIPMDC
Sbjct: 1   MRRYSPPYHSPPRRGYGG--RGRSPPGRGYGGGGGGGGGYGRRREQSHGSLLVRNIPMDC 60

Query: 61  RPEELRASFERFGIVRDVYIPKDFYSGQPRGFAFVEFVDPYEASEAQYHMNGKKFGGREI 120
           RPEELRA FERFG+VRDVYIPKD+YSG+PRGFAFVEFVDPYEASEAQYHMNGKKF GREI
Sbjct: 61  RPEELRAPFERFGLVRDVYIPKDYYSGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREI 120

Query: 121 IVVLAAESRKRPEQMRQRSRRGGPSGYGGRRSYYGRSRSRSLSRSRSPQHPSGSRSRYRS 180
            VVLAAESRKRPEQMRQRSRR GPSGYGGRRSYYGRSRSRS+SRSRSP HPSGSRSRYRS
Sbjct: 121 TVVLAAESRKRPEQMRQRSRR-GPSGYGGRRSYYGRSRSRSVSRSRSPHHPSGSRSRYRS 180

Query: 181 RSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDDTDGHDHDGNG 240
           RSYSPAPRWRGDYSVSPSRRHADYPRSPRGAP ERDGERSQQ YSPGYD+ DGHDHDGNG
Sbjct: 181 RSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPHERDGERSQQAYSPGYDNADGHDHDGNG 240

Query: 241 YHEKSAFGGEDARASWRSSPGRRASPGRISRSPSGSRSRSADASPRPGR 290
           YH+KSAF G D RA+WRSSPGRR+SPGRISRSPSGSRSRSADASPR GR
Sbjct: 241 YHDKSAFEGGDVRANWRSSPGRRSSPGRISRSPSGSRSRSADASPRHGR 286

[Close]

BLAST of Sed0013318.1 vs. NCBI nr
Match: XP_008461655.1 (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Cucumis melo] >XP_008461656.1 PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Cucumis melo] >XP_008461657.1 PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Cucumis melo])

HSP 1 Score: 472.2 bits (1214), Expect = 3.1e-129
Identity = 250/289 (86.51%), Postives = 263/289 (91.00%), Query Frame = 0


Query: 1   MRRYSPLYHSPPRRGYGGPDRGRSPPRRGYGGGGGGGGGYGRRREEAHGSLLVRNIPMDC 60
           MRRYSP YHSPPRRGYGG  RGRSPP RGYGGGGGGGGGYGRRRE+ HGSLLVRNIPMDC
Sbjct: 1   MRRYSPPYHSPPRRGYGG--RGRSPPGRGYGGGGGGGGGYGRRREQPHGSLLVRNIPMDC 60

Query: 61  RPEELRASFERFGIVRDVYIPKDFYSGQPRGFAFVEFVDPYEASEAQYHMNGKKFGGREI 120
           RPEELRA FERFG+VRDVYIPKD+Y+G+PRGFAFVEFVDPYEASEAQYHMNGKKF GREI
Sbjct: 61  RPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREI 120

Query: 121 IVVLAAESRKRPEQMRQRSRRGGPSGYGGRRSYYGRSRSRSLSRSRSPQHPSGSRSRYRS 180
            VVLAAESRKRPEQMRQRSRR GPSGYGGRRS+YGRSRSRS+SRSRSP+HPSGSRSRYRS
Sbjct: 121 TVVLAAESRKRPEQMRQRSRR-GPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRS 180

Query: 181 RSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDDTDGHDHDGNG 240
           RSYSPAPRWRGDYSVSP RRHADYP SPRGAPRERD ERS+QVYSPGYD+ D HD +GNG
Sbjct: 181 RSYSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDVERSRQVYSPGYDNADEHDQNGNG 240

Query: 241 YHEKSAFGGEDARASWRSSPGRRASPGRISRSPSGSRSRSADASPRPGR 290
           YH+KS F GEDAR +WRS      SPGR SRSPSGSRSRSADASPR GR
Sbjct: 241 YHDKSGFEGEDARGNWRS------SPGRTSRSPSGSRSRSADASPRHGR 280

[Close]

BLAST of Sed0013318.1 vs. NCBI nr
Match: KAG7030730.1 (Serine/arginine-rich SC35-like splicing factor SCL30, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 468.4 bits (1204), Expect = 4.5e-128
Identity = 252/292 (86.30%), Postives = 263/292 (90.07%), Query Frame = 0


Query: 1   MRRYSPLYHSPPRRGYGGPDRGRSPPRRGY---GGGGGGGGGYGRRREEAHGSLLVRNIP 60
           MRRYSP YHSPPRRGYGG  RGRSPP RGY   GGGGGGGGGYGRRRE++HGSLLVRNIP
Sbjct: 1   MRRYSPPYHSPPRRGYGG--RGRSPPGRGYGGGGGGGGGGGGYGRRREQSHGSLLVRNIP 60

Query: 61  MDCRPEELRASFERFGIVRDVYIPKDFYSGQPRGFAFVEFVDPYEASEAQYHMNGKKFGG 120
           MDCRPEELRA FERFG+VRDVYIPKD+Y+G PRGFAFVEFVDPYEASEAQYHMNGKKF G
Sbjct: 61  MDCRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAG 120

Query: 121 REIIVVLAAESRKRPEQMRQRSRRGGPSGYGGRRSYYGRSRSRSLSRSRSPQHPSGSRSR 180
           REI VVLAAESRKRPEQMRQRSRR GPSGYGGRRSYYGRSRSRS+SRSRSP  PSGS SR
Sbjct: 121 REITVVLAAESRKRPEQMRQRSRR-GPSGYGGRRSYYGRSRSRSVSRSRSPHRPSGS-SR 180

Query: 181 YRSRSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDDTDGHDHD 240
           YRSRSYSPAPRWRG+YS+SP RRHADYPRSPRGAPRERDGERS QVYSPGYD+  GHDHD
Sbjct: 181 YRSRSYSPAPRWRGNYSLSPDRRHADYPRSPRGAPRERDGERSHQVYSPGYDNAGGHDHD 240

Query: 241 GNGYHEKSAFGGEDARASWRSSPGRRASPGRISRSPSGSRSRSADASPRPGR 290
           GNGYH+K+AF GEDARA WRS      SPGR SRSPSGSRSRSADASPR GR
Sbjct: 241 GNGYHDKTAFEGEDARADWRS------SPGRTSRSPSGSRSRSADASPRHGR 282

[Close]

BLAST of Sed0013318.1 vs. NCBI nr
Match: XP_038892248.1 (serine/arginine-rich SC35-like splicing factor SCL30 isoform X2 [Benincasa hispida])

HSP 1 Score: 467.2 bits (1201), Expect = 1.0e-127
Identity = 251/292 (85.96%), Postives = 266/292 (91.10%), Query Frame = 0


Query: 1   MRRYSPLYHSPPRRGYGGPDRGRSPPRRGY---GGGGGGGGGYGRRREEAHGSLLVRNIP 60
           MRRYSP YHSPPRRGYGG  RGRSPP RGY   GGGGGGGGGYGRRRE+ HGSLLVRNIP
Sbjct: 1   MRRYSPPYHSPPRRGYGG--RGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIP 60

Query: 61  MDCRPEELRASFERFGIVRDVYIPKDFYSGQPRGFAFVEFVDPYEASEAQYHMNGKKFGG 120
           MDCRPEELRA FERFG+VRDVYIPKD+Y+G+PRGFAFVEFVDPYEASEAQYHMNGKKF G
Sbjct: 61  MDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQYHMNGKKFAG 120

Query: 121 REIIVVLAAESRKRPEQMRQRSRRGGPSGYGGRRSYYGRSRSRSLSRSRSPQHPSGSRSR 180
           REI VVLAAESRKRPEQMRQRSRR GPSGYGGRRS+YGRSRSRS+SRSRSP+HPSGSRSR
Sbjct: 121 REITVVLAAESRKRPEQMRQRSRR-GPSGYGGRRSHYGRSRSRSISRSRSPRHPSGSRSR 180

Query: 181 YRSRSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDDTDGHDHD 240
           YRSRSYSPAPRWRGDYSVSPSRRHADYP SPRG PRERD ER++QVYSPGYD+ D H+H+
Sbjct: 181 YRSRSYSPAPRWRGDYSVSPSRRHADYPESPRG-PRERDAERNRQVYSPGYDNADDHNHN 240

Query: 241 GNGYHEKSAFGGEDARASWRSSPGRRASPGRISRSPSGSRSRSADASPRPGR 290
           GNGYH+KSAF GEDARA+WRS      SPGR SRSPSGSRSRSADASPR GR
Sbjct: 241 GNGYHDKSAFEGEDARANWRS------SPGRTSRSPSGSRSRSADASPRHGR 282

[Close]

BLAST of Sed0013318.1 vs. NCBI nr
Match: KAG6600058.1 (Serine/arginine-rich SC35-like splicing factor SCL30, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 466.1 bits (1198), Expect = 2.2e-127
Identity = 250/288 (86.81%), Postives = 261/288 (90.62%), Query Frame = 0


Query: 1   MRRYSPLYHSPPRRGYGGPDRGRSPPRRGY--GGGGGGGGGYGRRREEAHGSLLVRNIPM 60
           MRRYSP YHSPPRRGYGG  RGRSPP RGY  GGGGGGGGGYGRRRE++HGSLLVRNIPM
Sbjct: 1   MRRYSPPYHSPPRRGYGG--RGRSPPGRGYGGGGGGGGGGGYGRRREQSHGSLLVRNIPM 60

Query: 61  DCRPEELRASFERFGIVRDVYIPKDFYSGQPRGFAFVEFVDPYEASEAQYHMNGKKFGGR 120
           DCRPEELRA FERFG+VRDVYIPKD+Y+G PRGFAFVEFVDPYEASEAQYHMNGKKF GR
Sbjct: 61  DCRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGR 120

Query: 121 EIIVVLAAESRKRPEQMRQRSRRGGPSGYGGRRSYYGRSRSRSLSRSRSPQHPSGSRSRY 180
           EI VVLAAESRKRPEQMRQRSRR GPSGYGGRRSYYGRSRSRS+SRSRSP  PSGS SRY
Sbjct: 121 EITVVLAAESRKRPEQMRQRSRR-GPSGYGGRRSYYGRSRSRSVSRSRSPHRPSGS-SRY 180

Query: 181 RSRSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDDTDGHDHDG 240
           RSRSYSPAPRWRG+YS+SP RRHADYPRSPRGAPRERDGERS QVYSPGYD+  GHDHDG
Sbjct: 181 RSRSYSPAPRWRGNYSLSPDRRHADYPRSPRGAPRERDGERSHQVYSPGYDNAGGHDHDG 240

Query: 241 NGYHEKSAFGGEDARASWRSSPGRRASPGRISRSPSGSRSRSADASPR 287
           NGYH+K+AF GEDARA WRS      SPGR SRSPSGSRSRSADASPR
Sbjct: 241 NGYHDKTAFEGEDARADWRS------SPGRTSRSPSGSRSRSADASPR 278

[Close]

BLAST of Sed0013318.1 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 8.1e-72
Identity = 176/295 (59.66%), Postives = 198/295 (67.12%), Query Frame = 0


Query: 1   MRRYSPLYHSPPRRGYGGPDRGRS----PPRRGYGGGGGGGGGYGRRREEAHGSLLVRNI 60
           MRRYSP Y+SPPRRGYGG  RGRS    PPRRGYGGGGGGGG    RR  +HGSLLVRNI
Sbjct: 1   MRRYSPPYYSPPRRGYGG--RGRSPPPPPPRRGYGGGGGGGG----RRGSSHGSLLVRNI 60

Query: 61  PMDCRPEELRASFERFGIVRDVYIPKDFYSGQPRGFAFVEFVDPYEASEAQYHMNGKKFG 120
           P+DCRPEELR  FERFG VRDVYIP+D+YSGQPRGFAFVEFVD Y+A EAQ  MN + F 
Sbjct: 61  PLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFA 120

Query: 121 GREIIVVLAAESRKRPEQMRQRSRRGGPSGYGGRRSYYGRSRSRSLSRSRSPQHPSGSRS 180
           GREI VV+A+ESRKRPE+MR ++R       G R   +GRSRSRS+SRSRSP+ PS SRS
Sbjct: 121 GREITVVVASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRS 180

Query: 181 RYRSRSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDD--TDGH 240
           RYRSRSYSPAPR RG                PRG   E D   S++ YSPGY+       
Sbjct: 181 RYRSRSYSPAPRRRGG--------------PPRG---EEDENYSRRSYSPGYEGAAAAAP 240

Query: 241 DHDGNG---YHEKSAFGGEDARASWRSSPGRRASPGRISRSPSGSRSRSADASPR 287
           D D NG     EK  +  ED R   R+          +SRSPSGSRSRS + SPR
Sbjct: 241 DRDRNGDNEIREKPGYEAEDRRRGGRA----------VSRSPSGSRSRSVEVSPR 262

[Close]

BLAST of Sed0013318.1 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.4e-31
Identity = 126/288 (43.75%), Postives = 154/288 (53.47%), Query Frame = 0


Query: 2   RRYSPLYHSPPRRGYGGPDRGRSPPRRGYGGGGGGGGGYGRRREEAHGSLLVRNIPMDCR 61
           R Y+P   SPP RGYG   RGRSP  R         G YG R  +   SLLVRN+  DCR
Sbjct: 4   RSYTP---SPP-RGYG--RRGRSPSPR---------GRYGGRSRDLPTSLLVRNLRHDCR 63

Query: 62  PEELRASFERFGIVRDVYIPKDFYSGQPRGFAFVEFVDPYEASEAQYHMNGKKFGGREII 121
            E+LR SFE+FG V+D+Y+P+D+Y+G PRGF FV+F+DP +A++A++HM+G    GRE+ 
Sbjct: 64  QEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELT 123

Query: 122 VVLAAESRKRPEQMRQRSRRGGPSGYGGRRSYYGRSRSRSLSRSRSPQHPSGSRSRYRSR 181
           VV A E+RK+P +MR R R GG   +  RR    R+  R  SRSRSP  P   RSR RS 
Sbjct: 124 VVFAEENRKKPTEMRARERGGG--RFRDRR----RTPPRYYSRSRSPP-PRRGRSRSRS- 183

Query: 182 SYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDDTDGHDHDGNGY 241
                    GDY   P RRH  +PRS        DG RS    SP  D + G        
Sbjct: 184 ---------GDYYSPPPRRH--HPRSISPREERYDGRRSYS-RSPASDGSRGRSL--TPV 243

Query: 242 HEKSAFGGEDARASWRSSPGRRASPGRISRSPSGSRSRSADASPRPGR 290
             KS       R S   SP R  SP    R+ S S  RS   SPR  R
Sbjct: 244 RGKSRSLSPSPRRSISRSPRRSRSPSP-KRNRSVSPRRSISRSPRRSR 253

[Close]

BLAST of Sed0013318.1 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.6e-27
Identity = 113/288 (39.24%), Postives = 150/288 (52.08%), Query Frame = 0


Query: 2   RRYSPLYHSPPRRGYGGPDRGRSPPRRGYGGGGGGGGGYGRRREEAHGSLLVRNIPMDCR 61
           R Y+P   SPP RGYG   RGRSP  RG  GG         R  +   SLLVRN+  DCR
Sbjct: 4   RSYTP---SPP-RGYG--RRGRSPSPRGRFGGS--------RDSDLPTSLLVRNLRHDCR 63

Query: 62  PEELRASFERFGIVRDVYIPKDFYSGQPRGFAFVEFVDPYEASEAQYHMNGKKFGGREII 121
            E+LR  FE+FG V+D+Y+P+D+Y+G PRGF F++F+DP +A+EA++ M+G    GRE+ 
Sbjct: 64  QEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELT 123

Query: 122 VVLAAESRKRPEQMRQRSRRGGPSGYGGRRSYYGRSRSRSLSRSRSPQHPSGSRSRYRSR 181
           VV A E+RK+P +MR R R       GGR + +   R      SRSP    G RSR RSR
Sbjct: 124 VVFAEENRKKPTEMRTRDR-------GGRSNRFQDRRRSPPRYSRSPPPRRGRRSRSRSR 183

Query: 182 SYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDDTDGHDHDGNGY 241
            Y+            P++RH     SP+   R  + ERS       Y  +  H    NG 
Sbjct: 184 GYNS----------PPAKRHQSRSVSPQ--DRRYEKERS-------YSRSPPH----NGS 243

Query: 242 HEKSAFGGEDARASWRSSPGRRASPGRISRSPSGSRSRSADASPRPGR 290
             +S   G   R    S   RR+   R +RS +  ++RS    PR  R
Sbjct: 244 RVRS---GSPGRVKSHSRSPRRSVSPRKNRSYTPEQARSQSPVPRQSR 244

[Close]

BLAST of Sed0013318.1 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.1e-23
Identity = 88/217 (40.55%), Postives = 116/217 (53.46%), Query Frame = 0


Query: 14  RGYGGPDRGRSPP--RRGYGGGGGGGGGYGRRREEAHGS-LLVRNIPMDCRPEELRASFE 73
           R Y    R RSPP  R+GY           R  E +  S LL+RN+P+D RP +LR SFE
Sbjct: 9   RSYSPRPRDRSPPRERKGYDDNRLRERPSSRDHESSGPSGLLIRNLPLDARPNDLRDSFE 68

Query: 74  RFGIVRDVYIPKDFYSGQPRGFAFVEFVDPYEASEAQYHMNGKKFGGREIIVVLAAESRK 133
           RFG ++D+Y+P+++Y+G+PRGF FV++    +A+EA   MN K  GGREI +V A E+RK
Sbjct: 69  RFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFAEENRK 128

Query: 134 RPEQMRQRSRRGGPSGYGGRRSYYG-RSRSRSLSRSRSPQHPSGSRSRYRSRSYSPAPRW 193
            P++MR  +   G  G   R S+   R R RS SRSRSP       S+ R          
Sbjct: 129 TPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESRHSKVRE--------- 188

Query: 194 RGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSP 227
             D   SP RR     RSP   PR     +S+   SP
Sbjct: 189 --DDLYSPRRRSRSISRSP--LPRNEREYKSRNCRSP 212

[Close]

BLAST of Sed0013318.1 vs. ExPASy Swiss-Prot
Match: Q9BRL6 (Serine/arginine-rich splicing factor 8 OS=Homo sapiens OX=9606 GN=SRSF8 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.2e-20
Identity = 97/245 (39.59%), Postives = 125/245 (51.02%), Query Frame = 0


Query: 50  SLLVRNIPMDCRPEELRASFERFGIVRDVYIPKDFYSGQPRGFAFVEFVDPYEASEAQYH 109
           +L V N+     P+ LR  FE++G V DVYIP++ ++  PRGFAFV F D  +A +A+  
Sbjct: 15  TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74

Query: 110 MNGKKFGGREIIVVLAAESRKRPEQMRQRSRRGGP--SGYGGR-RSYYGRSRS---RSLS 169
           M+G +  GRE+ V +A   R+   + RQ   RG     GYG R RSY  RSRS   R  S
Sbjct: 75  MDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRS 134

Query: 170 RSRSPQ-HPSGSRSRYRSRSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQ 229
           RSR P    S SRSRYR   YS +P  R  YS       + Y RSP    R R+      
Sbjct: 135 RSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYS------RSRYSRSPYSRSRYRESRYGGS 194

Query: 230 VY-SPGYDDTDGHDHDGNGYHEKSAFGGEDARASW-RSSPGRRASPGRISRSPSGSRSRS 286
            Y S GY ++    +  +  H KS        AS  +SS  RR+    +SRS S SRS S
Sbjct: 195 HYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSS 253

[Close]

BLAST of Sed0013318.1 vs. ExPASy TrEMBL
Match: A0A6J1CBL6 (serine/arginine-rich SC35-like splicing factor SCL30 OS=Momordica charantia OX=3673 GN=LOC111010084 PE=4 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 1.6e-139
Identity = 263/289 (91.00%), Postives = 273/289 (94.46%), Query Frame = 0


Query: 1   MRRYSPLYHSPPRRGYGGPDRGRSPPRRGYGGGGGGGGGYGRRREEAHGSLLVRNIPMDC 60
           MRRYSP YHSPPRRGYGG  RGRSPP RGYGGGGGGGGGYGRRRE++HGSLLVRNIPMDC
Sbjct: 1   MRRYSPPYHSPPRRGYGG--RGRSPPGRGYGGGGGGGGGYGRRREQSHGSLLVRNIPMDC 60

Query: 61  RPEELRASFERFGIVRDVYIPKDFYSGQPRGFAFVEFVDPYEASEAQYHMNGKKFGGREI 120
           RPEELRA FERFG+VRDVYIPKD+YSG+PRGFAFVEFVDPYEASEAQYHMNGKKF GREI
Sbjct: 61  RPEELRAPFERFGLVRDVYIPKDYYSGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREI 120

Query: 121 IVVLAAESRKRPEQMRQRSRRGGPSGYGGRRSYYGRSRSRSLSRSRSPQHPSGSRSRYRS 180
            VVLAAESRKRPEQMRQRSRR GPSGYGGRRSYYGRSRSRS+SRSRSP HPSGSRSRYRS
Sbjct: 121 TVVLAAESRKRPEQMRQRSRR-GPSGYGGRRSYYGRSRSRSVSRSRSPHHPSGSRSRYRS 180

Query: 181 RSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDDTDGHDHDGNG 240
           RSYSPAPRWRGDYSVSPSRRHADYPRSPRGAP ERDGERSQQ YSPGYD+ DGHDHDGNG
Sbjct: 181 RSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPHERDGERSQQAYSPGYDNADGHDHDGNG 240

Query: 241 YHEKSAFGGEDARASWRSSPGRRASPGRISRSPSGSRSRSADASPRPGR 290
           YH+KSAF G D RA+WRSSPGRR+SPGRISRSPSGSRSRSADASPR GR
Sbjct: 241 YHDKSAFEGGDVRANWRSSPGRRSSPGRISRSPSGSRSRSADASPRHGR 286

[Close]

BLAST of Sed0013318.1 vs. ExPASy TrEMBL
Match: A0A1S3CFP8 (serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucumis melo OX=3656 GN=LOC103500205 PE=4 SV=1)

HSP 1 Score: 472.2 bits (1214), Expect = 1.5e-129
Identity = 250/289 (86.51%), Postives = 263/289 (91.00%), Query Frame = 0


Query: 1   MRRYSPLYHSPPRRGYGGPDRGRSPPRRGYGGGGGGGGGYGRRREEAHGSLLVRNIPMDC 60
           MRRYSP YHSPPRRGYGG  RGRSPP RGYGGGGGGGGGYGRRRE+ HGSLLVRNIPMDC
Sbjct: 1   MRRYSPPYHSPPRRGYGG--RGRSPPGRGYGGGGGGGGGYGRRREQPHGSLLVRNIPMDC 60

Query: 61  RPEELRASFERFGIVRDVYIPKDFYSGQPRGFAFVEFVDPYEASEAQYHMNGKKFGGREI 120
           RPEELRA FERFG+VRDVYIPKD+Y+G+PRGFAFVEFVDPYEASEAQYHMNGKKF GREI
Sbjct: 61  RPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQYHMNGKKFAGREI 120

Query: 121 IVVLAAESRKRPEQMRQRSRRGGPSGYGGRRSYYGRSRSRSLSRSRSPQHPSGSRSRYRS 180
            VVLAAESRKRPEQMRQRSRR GPSGYGGRRS+YGRSRSRS+SRSRSP+HPSGSRSRYRS
Sbjct: 121 TVVLAAESRKRPEQMRQRSRR-GPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRS 180

Query: 181 RSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDDTDGHDHDGNG 240
           RSYSPAPRWRGDYSVSP RRHADYP SPRGAPRERD ERS+QVYSPGYD+ D HD +GNG
Sbjct: 181 RSYSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDVERSRQVYSPGYDNADEHDQNGNG 240

Query: 241 YHEKSAFGGEDARASWRSSPGRRASPGRISRSPSGSRSRSADASPRPGR 290
           YH+KS F GEDAR +WRS      SPGR SRSPSGSRSRSADASPR GR
Sbjct: 241 YHDKSGFEGEDARGNWRS------SPGRTSRSPSGSRSRSADASPRHGR 280

[Close]

BLAST of Sed0013318.1 vs. ExPASy TrEMBL
Match: A0A6J1FWZ5 (serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucurbita moschata OX=3662 GN=LOC111447732 PE=4 SV=1)

HSP 1 Score: 461.8 bits (1187), Expect = 2.0e-126
Identity = 248/289 (85.81%), Postives = 259/289 (89.62%), Query Frame = 0


Query: 1   MRRYSPLYHSPPRRGYGGPDRGRSPPRRGYGGGGGGGGGYGRRREEAHGSLLVRNIPMDC 60
           MRRYSP YHSPPRRGYGG  RGRSPP RGY   GGGGGGYGR+RE++HGSLLVRNIPMDC
Sbjct: 1   MRRYSPPYHSPPRRGYGG--RGRSPPGRGY---GGGGGGYGRQREQSHGSLLVRNIPMDC 60

Query: 61  RPEELRASFERFGIVRDVYIPKDFYSGQPRGFAFVEFVDPYEASEAQYHMNGKKFGGREI 120
           RPEELRA FERFG+VRDVYIPKD+Y+G PRGFAFVEFVDPYEASEAQYHMNGKKF GREI
Sbjct: 61  RPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGREI 120

Query: 121 IVVLAAESRKRPEQMRQRSRRGGPSGYGGRRSYYGRSRSRSLSRSRSPQHPSGSRSRYRS 180
            VVLAAESRKRPEQMRQRSRR GPSGYGGRRSYYGRSRSRS+SRSRSP  PSGS SRYRS
Sbjct: 121 TVVLAAESRKRPEQMRQRSRR-GPSGYGGRRSYYGRSRSRSVSRSRSPHRPSGS-SRYRS 180

Query: 181 RSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDDTDGHDHDGNG 240
           RSYSPAPRWRG+YS+SP RRHADYPRSPRGAPRERDGERS QVYSPGYD+  GHDHDGNG
Sbjct: 181 RSYSPAPRWRGNYSLSPDRRHADYPRSPRGAPRERDGERSHQVYSPGYDNAGGHDHDGNG 240

Query: 241 YHEKSAFGGEDARASWRSSPGRRASPGRISRSPSGSRSRSADASPRPGR 290
           YH+K AF GEDARA WRS      SPGR SRSPSGSRSRSADASPR GR
Sbjct: 241 YHDKPAFEGEDARADWRS------SPGRTSRSPSGSRSRSADASPRHGR 276

[Close]

BLAST of Sed0013318.1 vs. ExPASy TrEMBL
Match: A0A6J1JIZ1 (serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucurbita maxima OX=3661 GN=LOC111485002 PE=4 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 4.5e-126
Identity = 252/294 (85.71%), Postives = 263/294 (89.46%), Query Frame = 0


Query: 1   MRRYSPLYHSPPRRGYGGPDRGRSPPRRGY---GGGGGGGGGYGRRREEAHGSLLVRNIP 60
           MRRYSP YHSPPRRGYGG  RGRSPP RGY   GGGGGGGGGYGRRRE+ HGSLLVRNIP
Sbjct: 1   MRRYSPPYHSPPRRGYGG--RGRSPPGRGYGGGGGGGGGGGGYGRRREQPHGSLLVRNIP 60

Query: 61  MDCRPEELRASFERFGIVRDVYIPKDFYSGQPRGFAFVEFVDPYEASEAQYHMNGKKFGG 120
           MDCRPEELRA FERFG+VRDVYIPKD+Y+GQPRGFAFVEFVDPYEASEAQYHMNGKKF G
Sbjct: 61  MDCRPEELRAPFERFGLVRDVYIPKDYYTGQPRGFAFVEFVDPYEASEAQYHMNGKKFAG 120

Query: 121 REIIVVLAAESRKRPEQMRQRSRRGGPSGYGGRRSYYGRSRSRSLSRSRSPQHPSGSRSR 180
           REI VVLAAESRKRPEQMRQRSRR GPS YGGRRSYYGRSRSRS+SRSRSP+HPSGSRSR
Sbjct: 121 REIAVVLAAESRKRPEQMRQRSRR-GPSDYGGRRSYYGRSRSRSVSRSRSPRHPSGSRSR 180

Query: 181 YRSRSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDDTDGHDHD 240
           +RSRSYSPAPRWRGDYSVSPSRRHADYPRSPRGA RERDGERS+QVYSPGYD+ DG D D
Sbjct: 181 HRSRSYSPAPRWRGDYSVSPSRRHADYPRSPRGAARERDGERSRQVYSPGYDNADGPDVD 240

Query: 241 --GNGYHEKSAFGGEDARASWRSSPGRRASPGRISRSPSGSRSRSADASPRPGR 290
             GNGYH+K AF GEDARA+W      R SP R SRSPSGSRSRSADASPR GR
Sbjct: 241 GNGNGYHDKPAFEGEDARANW------RPSPDRTSRSPSGSRSRSADASPRHGR 285

[Close]

BLAST of Sed0013318.1 vs. ExPASy TrEMBL
Match: A0A6J1H0N2 (serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucurbita moschata OX=3662 GN=LOC111458935 PE=4 SV=1)

HSP 1 Score: 457.2 bits (1175), Expect = 5.0e-125
Identity = 249/291 (85.57%), Postives = 261/291 (89.69%), Query Frame = 0


Query: 1   MRRYSPLYHSPPRRGYGGPDRGRSPPRRGYGGGGGGGGGYGRRREEAHGSLLVRNIPMDC 60
           MRRYSP YHSPPRRGYGG  RGRSPP RGY  GGGGGGGYGRRRE+ HGSLLVRNIPMDC
Sbjct: 1   MRRYSPPYHSPPRRGYGG--RGRSPPGRGY--GGGGGGGYGRRREQPHGSLLVRNIPMDC 60

Query: 61  RPEELRASFERFGIVRDVYIPKDFYSGQPRGFAFVEFVDPYEASEAQYHMNGKKFGGREI 120
           RPEELRA FERFG+VRDVYIPKD+Y+GQPRGFAFVEFVDPYEASEAQYHMNGKKF GREI
Sbjct: 61  RPEELRAPFERFGLVRDVYIPKDYYTGQPRGFAFVEFVDPYEASEAQYHMNGKKFAGREI 120

Query: 121 IVVLAAESRKRPEQMRQRSRRGGPSGYGGRRSYYGRSRSRSLSRSRSPQHPSGSRSRYRS 180
            VVLAAESRKRPEQMRQRSRR GPS YGGRRSYYGRSRSRS+SRSRSP+HPSGSRSR+RS
Sbjct: 121 AVVLAAESRKRPEQMRQRSRR-GPSDYGGRRSYYGRSRSRSVSRSRSPRHPSGSRSRHRS 180

Query: 181 RSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDDTDGHDHD--G 240
           RSYSPAPRWRGDYSVSPSRRHADYPRSPRGA RERDGER++QVYSPGYD+ DG D D  G
Sbjct: 181 RSYSPAPRWRGDYSVSPSRRHADYPRSPRGAARERDGERNRQVYSPGYDNADGPDVDGNG 240

Query: 241 NGYHEKSAFGGEDARASWRSSPGRRASPGRISRSPSGSRSRSADASPRPGR 290
           NGYH+K AF GEDARA+W      R SP R SRSPSGSRSRSADASPR GR
Sbjct: 241 NGYHDKPAFEGEDARANW------RPSPDRTSRSPSGSRSRSADASPRHGR 280

[Close]

BLAST of Sed0013318.1 vs. TAIR 10
Match: AT3G55460.1 (SC35-like splicing factor 30 )

HSP 1 Score: 271.9 bits (694), Expect = 5.8e-73
Identity = 176/295 (59.66%), Postives = 198/295 (67.12%), Query Frame = 0


Query: 1   MRRYSPLYHSPPRRGYGGPDRGRS----PPRRGYGGGGGGGGGYGRRREEAHGSLLVRNI 60
           MRRYSP Y+SPPRRGYGG  RGRS    PPRRGYGGGGGGGG    RR  +HGSLLVRNI
Sbjct: 1   MRRYSPPYYSPPRRGYGG--RGRSPPPPPPRRGYGGGGGGGG----RRGSSHGSLLVRNI 60

Query: 61  PMDCRPEELRASFERFGIVRDVYIPKDFYSGQPRGFAFVEFVDPYEASEAQYHMNGKKFG 120
           P+DCRPEELR  FERFG VRDVYIP+D+YSGQPRGFAFVEFVD Y+A EAQ  MN + F 
Sbjct: 61  PLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFA 120

Query: 121 GREIIVVLAAESRKRPEQMRQRSRRGGPSGYGGRRSYYGRSRSRSLSRSRSPQHPSGSRS 180
           GREI VV+A+ESRKRPE+MR ++R       G R   +GRSRSRS+SRSRSP+ PS SRS
Sbjct: 121 GREITVVVASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRS 180

Query: 181 RYRSRSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDD--TDGH 240
           RYRSRSYSPAPR RG                PRG   E D   S++ YSPGY+       
Sbjct: 181 RYRSRSYSPAPRRRGG--------------PPRG---EEDENYSRRSYSPGYEGAAAAAP 240

Query: 241 DHDGNG---YHEKSAFGGEDARASWRSSPGRRASPGRISRSPSGSRSRSADASPR 287
           D D NG     EK  +  ED R   R+          +SRSPSGSRSRS + SPR
Sbjct: 241 DRDRNGDNEIREKPGYEAEDRRRGGRA----------VSRSPSGSRSRSVEVSPR 262

[Close]

BLAST of Sed0013318.1 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-34
Identity = 105/223 (47.09%), Postives = 134/223 (60.09%), Query Frame = 0


Query: 2   RRYSPLYHSPPRRGYGGPDRGRSPPRRGYGGGGGGGGGYGRRREEAHGSLLVRNIPMDCR 61
           R Y+P   SPP RGYG   RGRSP  R         G YG R  +   SLLVRN+  DCR
Sbjct: 4   RSYTP---SPP-RGYG--RRGRSPSPR---------GRYGGRSRDLPTSLLVRNLRHDCR 63

Query: 62  PEELRASFERFGIVRDVYIPKDFYSGQPRGFAFVEFVDPYEASEAQYHMNGKKFGGREII 121
            E+LR SFE+FG V+D+Y+P+D+Y+G PRGF FV+F+DP +A++A++HM+G    GRE+ 
Sbjct: 64  QEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELT 123

Query: 122 VVLAAESRKRPEQMRQRSRRGGPSGYGGRRSYYGRSRSRSLSRSRSPQHPSGSRSRYRSR 181
           VV A E+RK+P +MR R R GG   +  RR    R+  R  SRSRSP  P   RSR RS 
Sbjct: 124 VVFAEENRKKPTEMRARERGGG--RFRDRR----RTPPRYYSRSRSPP-PRRGRSRSRSG 183

Query: 182 S-YSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQV 224
             YSP PR     S+SP     D  RS   +P   DG R + +
Sbjct: 184 DYYSPPPRRHHPRSISPREERYDGRRSYSRSPAS-DGSRGRSL 203

[Close]

BLAST of Sed0013318.1 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 138.3 bits (347), Expect = 9.9e-33
Identity = 126/288 (43.75%), Postives = 154/288 (53.47%), Query Frame = 0


Query: 2   RRYSPLYHSPPRRGYGGPDRGRSPPRRGYGGGGGGGGGYGRRREEAHGSLLVRNIPMDCR 61
           R Y+P   SPP RGYG   RGRSP  R         G YG R  +   SLLVRN+  DCR
Sbjct: 4   RSYTP---SPP-RGYG--RRGRSPSPR---------GRYGGRSRDLPTSLLVRNLRHDCR 63

Query: 62  PEELRASFERFGIVRDVYIPKDFYSGQPRGFAFVEFVDPYEASEAQYHMNGKKFGGREII 121
            E+LR SFE+FG V+D+Y+P+D+Y+G PRGF FV+F+DP +A++A++HM+G    GRE+ 
Sbjct: 64  QEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELT 123

Query: 122 VVLAAESRKRPEQMRQRSRRGGPSGYGGRRSYYGRSRSRSLSRSRSPQHPSGSRSRYRSR 181
           VV A E+RK+P +MR R R GG   +  RR    R+  R  SRSRSP  P   RSR RS 
Sbjct: 124 VVFAEENRKKPTEMRARERGGG--RFRDRR----RTPPRYYSRSRSPP-PRRGRSRSRS- 183

Query: 182 SYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDDTDGHDHDGNGY 241
                    GDY   P RRH  +PRS        DG RS    SP  D + G        
Sbjct: 184 ---------GDYYSPPPRRH--HPRSISPREERYDGRRSYS-RSPASDGSRGRSL--TPV 243

Query: 242 HEKSAFGGEDARASWRSSPGRRASPGRISRSPSGSRSRSADASPRPGR 290
             KS       R S   SP R  SP    R+ S S  RS   SPR  R
Sbjct: 244 RGKSRSLSPSPRRSISRSPRRSRSPSP-KRNRSVSPRRSISRSPRRSR 253

[Close]

BLAST of Sed0013318.1 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-30
Identity = 127/300 (42.33%), Postives = 155/300 (51.67%), Query Frame = 0


Query: 2   RRYSPLYHSPPRRGYGGPDRGRSPPRRGYGGGGGGGGGYGRRREEAHGSLLVRNIPMDCR 61
           R Y+P   SPP RGYG   RGRSP  R         G YG R  +   SLLVRN+  DCR
Sbjct: 4   RSYTP---SPP-RGYG--RRGRSPSPR---------GRYGGRSRDLPTSLLVRNLRHDCR 63

Query: 62  PEELRASFERFGIVRDVYIPKDFYSG------------QPRGFAFVEFVDPYEASEAQYH 121
            E+LR SFE+FG V+D+Y+P+D+Y+G             PRGF FV+F+DP +A++A++H
Sbjct: 64  QEDLRKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKHH 123

Query: 122 MNGKKFGGREIIVVLAAESRKRPEQMRQRSRRGGPSGYGGRRSYYGRSRSRSLSRSRSPQ 181
           M+G    GRE+ VV A E+RK+P +MR R  RGG S +  RR    R+  R  SRSRSP 
Sbjct: 124 MDGYLLLGRELTVVFAEENRKKPTEMRAR-ERGGGSRFRDRR----RTPPRYYSRSRSPP 183

Query: 182 HPSGSRSRYRSRSYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYD 241
            P   RSR RS          GDY   P RRH  +PRS        DG RS    SP  D
Sbjct: 184 -PRRGRSRSRS----------GDYYSPPPRRH--HPRSISPREERYDGRRSYS-RSPASD 243

Query: 242 DTDGHDHDGNGYHEKSAFGGEDARASWRSSPGRRASPGRISRSPSGSRSRSADASPRPGR 290
            + G          KS       R S   SP R  SP    R+ S S  RS   SPR  R
Sbjct: 244 GSRGRSL--TPVRGKSRSLSPSPRRSISRSPRRSRSPSP-KRNRSVSPRRSISRSPRRSR 266

[Close]

BLAST of Sed0013318.1 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 123.6 bits (309), Expect = 2.5e-28
Identity = 113/288 (39.24%), Postives = 150/288 (52.08%), Query Frame = 0


Query: 2   RRYSPLYHSPPRRGYGGPDRGRSPPRRGYGGGGGGGGGYGRRREEAHGSLLVRNIPMDCR 61
           R Y+P   SPP RGYG   RGRSP  RG  GG         R  +   SLLVRN+  DCR
Sbjct: 4   RSYTP---SPP-RGYG--RRGRSPSPRGRFGGS--------RDSDLPTSLLVRNLRHDCR 63

Query: 62  PEELRASFERFGIVRDVYIPKDFYSGQPRGFAFVEFVDPYEASEAQYHMNGKKFGGREII 121
            E+LR  FE+FG V+D+Y+P+D+Y+G PRGF F++F+DP +A+EA++ M+G    GRE+ 
Sbjct: 64  QEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELT 123

Query: 122 VVLAAESRKRPEQMRQRSRRGGPSGYGGRRSYYGRSRSRSLSRSRSPQHPSGSRSRYRSR 181
           VV A E+RK+P +MR R R       GGR + +   R      SRSP    G RSR RSR
Sbjct: 124 VVFAEENRKKPTEMRTRDR-------GGRSNRFQDRRRSPPRYSRSPPPRRGRRSRSRSR 183

Query: 182 SYSPAPRWRGDYSVSPSRRHADYPRSPRGAPRERDGERSQQVYSPGYDDTDGHDHDGNGY 241
            Y+            P++RH     SP+   R  + ERS       Y  +  H    NG 
Sbjct: 184 GYNS----------PPAKRHQSRSVSPQ--DRRYEKERS-------YSRSPPH----NGS 243

Query: 242 HEKSAFGGEDARASWRSSPGRRASPGRISRSPSGSRSRSADASPRPGR 290
             +S   G   R    S   RR+   R +RS +  ++RS    PR  R
Sbjct: 244 RVRS---GSPGRVKSHSRSPRRSVSPRKNRSYTPEQARSQSPVPRQSR 244

The following BLAST results are available for this feature:

BLAST of Sed0013318.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139086.1	3.3e-139	91.00	serine/arginine-rich SC35-like splicing factor SCL30 [Momordica charantia]	[more]
XP_008461655.1	3.1e-129	86.51	PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Cucumis melo] >...	[more]
KAG7030730.1	4.5e-128	86.30	Serine/arginine-rich SC35-like splicing factor SCL30, partial [Cucurbita argyros...	[more]
XP_038892248.1	1.0e-127	85.96	serine/arginine-rich SC35-like splicing factor SCL30 isoform X2 [Benincasa hispi...	[more]
KAG6600058.1	2.2e-127	86.81	Serine/arginine-rich SC35-like splicing factor SCL30, partial [Cucurbita argyros...	[more]

BLAST of Sed0013318.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L3X8	8.1e-72	59.66	Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=...	[more]
Q9SEU4	1.4e-31	43.75	Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=...	[more]
Q9LHP2	3.6e-27	39.24	Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX...	[more]
Q1PDV2	3.1e-23	40.55	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=...	[more]
Q9BRL6	4.2e-20	39.59	Serine/arginine-rich splicing factor 8 OS=Homo sapiens OX=9606 GN=SRSF8 PE=1 SV=...	[more]

BLAST of Sed0013318.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CBL6	1.6e-139	91.00	serine/arginine-rich SC35-like splicing factor SCL30 OS=Momordica charantia OX=3...	[more]
A0A1S3CFP8	1.5e-129	86.51	serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1FWZ5	2.0e-126	85.81	serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucurbita moschata OX=36...	[more]
A0A6J1JIZ1	4.5e-126	85.71	serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucurbita maxima OX=3661...	[more]
A0A6J1H0N2	5.0e-125	85.57	serine/arginine-rich SC35-like splicing factor SCL30 OS=Cucurbita moschata OX=36...	[more]

BLAST of Sed0013318.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55460.1	5.8e-73	59.66	SC35-like splicing factor 30	[more]
AT1G55310.2	1.4e-34	47.09	SC35-like splicing factor 33	[more]
AT1G55310.1	9.9e-33	43.75	SC35-like splicing factor 33	[more]
AT1G55310.3	1.6e-30	42.33	SC35-like splicing factor 33	[more]
AT3G13570.1	2.5e-28	39.24	SC35-like splicing factor 30A	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 50..123 e-value: 1.8E-23 score: 94.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 51..120 e-value: 4.8E-20 score: 71.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 49..127 score: 17.932785
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 41..162 e-value: 4.6E-28 score: 100.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..181
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 229..250
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..289
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	PANTHER	PTHR23147:SF96	OS02G0252100 PROTEIN	coord: 24..285
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 24..285
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 48..156

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0013318	Sed0013318	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0013318.1-three_prime_utr	Sed0013318.1-three_prime_utr-LG07:40488007..40488244	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0013318.1-exon	Sed0013318.1-exon-LG07:40488007..40488386	exon
Sed0013318.1-exon	Sed0013318.1-exon-LG07:40489097..40489282	exon
Sed0013318.1-exon	Sed0013318.1-exon-LG07:40489358..40489436	exon
Sed0013318.1-exon	Sed0013318.1-exon-LG07:40490190..40490230	exon
Sed0013318.1-exon	Sed0013318.1-exon-LG07:40490467..40490628	exon
Sed0013318.1-exon	Sed0013318.1-exon-LG07:40491928..40492005	exon
Sed0013318.1-exon	Sed0013318.1-exon-LG07:40492170..40492359	exon
Sed0013318.1-exon	Sed0013318.1-exon-LG07:40492850..40492964	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0013318.1-cds	Sed0013318.1-cds-LG07:40488245..40488386	CDS
Sed0013318.1-cds	Sed0013318.1-cds-LG07:40489097..40489282	CDS
Sed0013318.1-cds	Sed0013318.1-cds-LG07:40489358..40489436	CDS
Sed0013318.1-cds	Sed0013318.1-cds-LG07:40490190..40490230	CDS
Sed0013318.1-cds	Sed0013318.1-cds-LG07:40490467..40490628	CDS
Sed0013318.1-cds	Sed0013318.1-cds-LG07:40491928..40492005	CDS
Sed0013318.1-cds	Sed0013318.1-cds-LG07:40492170..40492351	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0013318.1-five_prime_utr	Sed0013318.1-five_prime_utr-LG07:40492352..40492359	five_prime_UTR
Sed0013318.1-five_prime_utr	Sed0013318.1-five_prime_utr-LG07:40492850..40492964	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0013318.1	Sed0013318.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding