Clc08G18205 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G18205
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr08: 28299899 .. 28302644 (-)
RNA-Seq Expression	Clc08G18205
Synteny	Clc08G18205

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAACGTCAAACCAGTAAAGCCACGAGTCACAAAACGACTCATACCTTGCCTCCGATTGAAACGGAGACGATCAGGTTTGAAGAGTTGCAGTTAGTTTACGCCTCCGTTGACGCGTCCATCTGGATCTAAACCCACCGATGAACGCAACGCCTATCGAAGGCGATACAAAAACCAATAAATTTTACGGAACAATGCAAGCAAGTTTTAAAATAAAAACAACGCGAAAATGAAGAAGAAAAGAAGATGAGATGATTTTGATAATTTCATACAGAACAATCTGCCTAAATGAAGTTCCAACAATGGTCACCAAGGCGGCCATCGAAAGCAATACTGGCTTAGGGTTTAGCTGCTTTATTTATAGTCAATCAGAGACCATGTTCGCGCTGGATGAGCTTTGTTTATGATTTGGGCTTCAACCAGAATTCCAGATCCAGCCCAATTTATTCGACCTATTAGACACACACACATATATATTTGAAGATTTCAGAAAATAGTATATGCCATACATCATTGTATGGGAAAGAAAAAATGCATATCGTGTCCGTATCAACATTTTCATGACTTATTCCTTGACATTATGCCGTAAACAACTCAATAAAATATATATATATATATATAAAGTACAAATAAAATGTCAAAATTATTAATATAATATAAATAATAAACATTTTAAAAAAAAATGTCCTTCTAAGGAATGAAATGTTTGTCGATTAATTTTAATATTTTATTTGATTTTTATTTTTGTTTTAATAATCTTTCTAAGAGTATTAATGGAGATATTTTTTAAAAATTTTGAAATTTACATCCATATTTTAAAACTTGAGTCGTGTATATATATATTTTTTATTAGATTCTATTTTAGTTTCTAAACTTTCATACTCATTTTATTTTAGTCTATACATTTTTACGATATATTTTGGTTTTAAACTTTTAGAATTATTCTAGTTTGACTCTAAATTTTTAAAATGTTAAGTTTAGTATATATACTTTATAGTTTGTCAATTTTAAATTAGTAACCACTTTGGCCTTAGTTTTATTTAAATGTTGACAAGTTAATTATAAAATTTAAGTATGTGTAGTACATTGACACGAACCATTTGATGCCACATATGTTAAACACAAGCATTGACAACTTAAAAATTATATTGAAAAATAGCATAACACGACCAAAATAGTCGTTTTAAAAAAAATTAGAAACTTAAATAATGAATTTTAAAGCCCATAGTATTCTTTTAAATTGAGCTTCCAACACCCCTCCCACTTCTAATGTATTGTTTTGTTATCTTCTTTGTTTTAAAAATGCAATCCAATTTTTGAAAAAAAAAAAAAAAAGTCTTTTAACATTTTGTTTTTTATTTTTTGAAATTTAATTAAGAATAACTCTTCTACTTGGAAAATGTACCAAATAGAAACAAAAAACTAAAATCTAAACCCTAAACCAAAAATAAGGTATAAACAAATTATCTTGAAAAATAACAATTAAGAAAGAACGAAGAGTTATAAAAGTACAAAAAAACTGCCCCCATACAGGATCGAACTACAGACCTTCAATTTACAACTGAGCTATAGGGGAAATATACCACTGAGCTACAGGATCAAAATTGGCGGTCTACCACTGAGCTATAGGGGAAATATACCTAGAGCCGTAAAGCAAATAATTAATTGACAAATATTATTCGTAGAGTTACAAAAGAAAAGAAAAATGTGGGGAAAAATAATTGCCCCCATGCAGGATCGAACTACAGACCTACAGTTTACAAGACTGACGCTCTACGACTGAGCTATAGGGCAACATATTCTTGAGGGTATTTAAATCACATTTTGTAAACAATCTTGCTCGAAATCGGACGGACGGGATGCGGGTTGCAGGTTCAGTGTATGTAGTTTCGTAGCATCGGATTATTACTCGAAGAGATCTATTCCTCTCCATATCGCACCACCATCTCCAACTTCTGCTCTTGGCCTTGTTTTCCTGAGTTTCCGCGTCGCATTTTATCGATCTTCTCCCGAATTACAATCTGTAGAAGAGACGAGCTTCTCAAATTGAAGAGAAGAAGATGGTGAAAGTGGCGACGTTCTTTGCAATGTCGTTGGGGGCCTTCGTATTCTGGCAGTCAATGGATAAACTCCATGTTTGGATCGCTCTCCGTCAAGACGAAAAGGTTCTTATTCAATTTTCCCCCTTCCGATTGCTCTATTTGTTTCCTACTTTTCATTTCATAATCCTTATAGTTATTTTTTCAATTGATGGATACTTCTCCATAGAAGAGTGGGAAAAAGGAAAACCCTAGGTGGCAACGTTTCCCCAGCTTATTCCTTGATATCGTTAGCTTTGAATGCGATATCTTATATAACATTTGGAATGTAAATTGTAATTGTTTATAAGGCATCTCTGTGTTCCATTTTGCTGTTTCAGAAAGAGAGGTTGGAAAGGGAAGCAGAGATTAGAAGAGTTAGAGAAGAGCTACTGCAACAAGCGAAACAGAACGACTCTCTTGCTTGACTCTTCTCTTTTCTTCACCGGTGGCCTTCCCTTCTTTTTTTATTTTTATAAGTATCATTTGTCTGTTCTAGAACAATGATAATAGGGTGGCCTATAAATGGTTGATTGTTCATTTCTATGATTTTCATGGTTATCAAATGGTACACAATGCTCATTTCAGTTTGGAGCTTTGCTTTTTGAATAATTGAATTTGCATCATGATTCAGTTTGTCAAAACTTGACTCCATGTTGTGTTCT

mRNA sequence

ATGGCACAACGTCAAACCAGTAAAGCCACGAGTCACAAAACGACTCATACCTTGCCTCCGATTGAAACGGAGACGATCAGGTTTGAAGAGTTGCAAAGAAAAGAAGATGAGATGATTTTGATAATTTCATACAGAACAATCTGCCTAAATGAAGTTCCAACAATGGTCACCAAGGCGGCCATCGAAAGCAATACTGGCTTAGGGTTCAGTGTATGTAGTTTCGTAGCATCGGATTATTACTCGAAGAGATCTATTCCTCTCCATATCGCACCACCATCTCCAACTTCTGCTCTTGGCCTTGTTTTCCTGAGTTTCCGCAAGAGACGAGCTTCTCAAATTGAAGAGAAGAAGATGGTGAAAGTGGCGACGTTCTTTGCAATGTCGTTGGGGGCCTTCGTATTCTGGCAGTCAATGGATAAACTCCATGTTTGGATCGCTCTCCGTCAAGACGAAAAGAAGAGTGGGAAAAAGGAAAACCCTAGGTGGCAACGTTTCCCCAGCTTATTCCTTGATATCAAAGAGAGGTTGGAAAGGGAAGCAGAGATTAGAAGAGTTAGAGAAGAGCTACTGCAACAAGCGAAACAGAACGACTCTCTTGCTTGACTCTTCTCTTTTCTTCACCGGTGGCCTTCCCTTCTTTTTTTATTTTTATAAGTATCATTTGTCTGTTCTAGAACAATGATAATAGGGTGGCCTATAAATGGTTGATTGTTCATTTCTATGATTTTCATGGTTATCAAATGGTACACAATGCTCATTTCAGTTTGGAGCTTTGCTTTTTGAATAATTGAATTTGCATCATGATTCAGTTTGTCAAAACTTGACTCCATGTTGTGTTCT

Coding sequence (CDS)

ATGGCACAACGTCAAACCAGTAAAGCCACGAGTCACAAAACGACTCATACCTTGCCTCCGATTGAAACGGAGACGATCAGGTTTGAAGAGTTGCAAAGAAAAGAAGATGAGATGATTTTGATAATTTCATACAGAACAATCTGCCTAAATGAAGTTCCAACAATGGTCACCAAGGCGGCCATCGAAAGCAATACTGGCTTAGGGTTCAGTGTATGTAGTTTCGTAGCATCGGATTATTACTCGAAGAGATCTATTCCTCTCCATATCGCACCACCATCTCCAACTTCTGCTCTTGGCCTTGTTTTCCTGAGTTTCCGCAAGAGACGAGCTTCTCAAATTGAAGAGAAGAAGATGGTGAAAGTGGCGACGTTCTTTGCAATGTCGTTGGGGGCCTTCGTATTCTGGCAGTCAATGGATAAACTCCATGTTTGGATCGCTCTCCGTCAAGACGAAAAGAAGAGTGGGAAAAAGGAAAACCCTAGGTGGCAACGTTTCCCCAGCTTATTCCTTGATATCAAAGAGAGGTTGGAAAGGGAAGCAGAGATTAGAAGAGTTAGAGAAGAGCTACTGCAACAAGCGAAACAGAACGACTCTCTTGCTTGA

Protein sequence

MAQRQTSKATSHKTTHTLPPIETETIRFEELQRKEDEMILIISYRTICLNEVPTMVTKAAIESNTGLGFSVCSFVASDYYSKRSIPLHIAPPSPTSALGLVFLSFRKRRASQIEEKKMVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKSGKKENPRWQRFPSLFLDIKERLEREAEIRRVREELLQQAKQNDSLA

Homology

[Close]

BLAST of Clc08G18205 vs. NCBI nr
Match: XP_022962438.1 (uncharacterized protein LOC111462876 [Cucurbita moschata] >XP_022996773.1 uncharacterized protein LOC111491907 [Cucurbita maxima] >XP_023002123.1 uncharacterized protein LOC111496080 [Cucurbita maxima] >XP_023545500.1 uncharacterized protein LOC111804906 [Cucurbita pepo subsp. pepo] >KAG7029223.1 hypothetical protein SDJN02_07561 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.0 bits (271), Expect = 4.8e-20
Identity = 63/83 (75.90%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 118 MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKSGKKENPRWQRFPSLFLDIKERLE 177
           MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEK                    KERLE
Sbjct: 1   MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEK--------------------KERLE 60

Query: 178 REAEIRRVREELLQQAKQNDSLA 201
           REAEIRRVREELLQQAKQNDSLA
Sbjct: 61  REAEIRRVREELLQQAKQNDSLA 63

[Close]

BLAST of Clc08G18205 vs. NCBI nr
Match: XP_038885062.1 (uncharacterized protein LOC120075596 [Benincasa hispida])

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-19
Identity = 62/83 (74.70%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 118 MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKSGKKENPRWQRFPSLFLDIKERLE 177
           MVKVATFFAM+LGAFVFWQSMDKLHVWIALRQDEK                    KERLE
Sbjct: 1   MVKVATFFAMTLGAFVFWQSMDKLHVWIALRQDEK--------------------KERLE 60

Query: 178 REAEIRRVREELLQQAKQNDSLA 201
           REAEIRRVREELLQQAKQNDSLA
Sbjct: 61  REAEIRRVREELLQQAKQNDSLA 63

[Close]

BLAST of Clc08G18205 vs. NCBI nr
Match: KGN62333.1 (hypothetical protein Csa_018655 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-19
Identity = 62/83 (74.70%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 118 MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKSGKKENPRWQRFPSLFLDIKERLE 177
           MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEK                    KERLE
Sbjct: 1   MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEK--------------------KERLE 60

Query: 178 REAEIRRVREELLQQAKQNDSLA 201
           +EAEIRRVREELLQQAKQNDSLA
Sbjct: 61  KEAEIRRVREELLQQAKQNDSLA 63

[Close]

BLAST of Clc08G18205 vs. NCBI nr
Match: XP_016899934.1 (PREDICTED: uncharacterized protein LOC103487730 [Cucumis melo] >KAA0061049.1 uncharacterized protein E6C27_scaffold501G001870 [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-19
Identity = 61/83 (73.49%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 118 MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKSGKKENPRWQRFPSLFLDIKERLE 177
           MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEK                    KER+E
Sbjct: 1   MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEK--------------------KERME 60

Query: 178 REAEIRRVREELLQQAKQNDSLA 201
           +EAEIRRVREELLQQAKQNDSLA
Sbjct: 61  KEAEIRRVREELLQQAKQNDSLA 63

[Close]

BLAST of Clc08G18205 vs. NCBI nr
Match: XP_023537427.1 (uncharacterized protein LOC111798484 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 106.7 bits (265), Expect = 2.4e-19
Identity = 62/83 (74.70%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 118 MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKSGKKENPRWQRFPSLFLDIKERLE 177
           MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEK                    KERLE
Sbjct: 1   MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEK--------------------KERLE 60

Query: 178 REAEIRRVREELLQQAKQNDSLA 201
           REAEIRRVREELLQQAKQ DSLA
Sbjct: 61  REAEIRRVREELLQQAKQKDSLA 63

[Close]

BLAST of Clc08G18205 vs. ExPASy TrEMBL
Match: A0A6J1KBZ1 (uncharacterized protein LOC111491907 OS=Cucurbita maxima OX=3661 GN=LOC111491907 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.3e-20
Identity = 63/83 (75.90%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 118 MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKSGKKENPRWQRFPSLFLDIKERLE 177
           MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEK                    KERLE
Sbjct: 1   MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEK--------------------KERLE 60

Query: 178 REAEIRRVREELLQQAKQNDSLA 201
           REAEIRRVREELLQQAKQNDSLA
Sbjct: 61  REAEIRRVREELLQQAKQNDSLA 63

[Close]

BLAST of Clc08G18205 vs. ExPASy TrEMBL
Match: A0A6J1HET5 (uncharacterized protein LOC111462876 OS=Cucurbita moschata OX=3662 GN=LOC111462876 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.3e-20
Identity = 63/83 (75.90%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 118 MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKSGKKENPRWQRFPSLFLDIKERLE 177
           MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEK                    KERLE
Sbjct: 1   MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEK--------------------KERLE 60

Query: 178 REAEIRRVREELLQQAKQNDSLA 201
           REAEIRRVREELLQQAKQNDSLA
Sbjct: 61  REAEIRRVREELLQQAKQNDSLA 63

[Close]

BLAST of Clc08G18205 vs. ExPASy TrEMBL
Match: A0A0A0LKK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G349670 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.2e-20
Identity = 62/83 (74.70%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 118 MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKSGKKENPRWQRFPSLFLDIKERLE 177
           MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEK                    KERLE
Sbjct: 1   MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEK--------------------KERLE 60

Query: 178 REAEIRRVREELLQQAKQNDSLA 201
           +EAEIRRVREELLQQAKQNDSLA
Sbjct: 61  KEAEIRRVREELLQQAKQNDSLA 63

[Close]

BLAST of Clc08G18205 vs. ExPASy TrEMBL
Match: A0A5A7V5Q7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001870 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 8.8e-20
Identity = 61/83 (73.49%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 118 MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKSGKKENPRWQRFPSLFLDIKERLE 177
           MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEK                    KER+E
Sbjct: 1   MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEK--------------------KERME 60

Query: 178 REAEIRRVREELLQQAKQNDSLA 201
           +EAEIRRVREELLQQAKQNDSLA
Sbjct: 61  KEAEIRRVREELLQQAKQNDSLA 63

[Close]

BLAST of Clc08G18205 vs. ExPASy TrEMBL
Match: A0A1S4DVC2 (uncharacterized protein LOC103487730 OS=Cucumis melo OX=3656 GN=LOC103487730 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 8.8e-20
Identity = 61/83 (73.49%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 118 MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKSGKKENPRWQRFPSLFLDIKERLE 177
           MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEK                    KER+E
Sbjct: 1   MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEK--------------------KERME 60

Query: 178 REAEIRRVREELLQQAKQNDSLA 201
           +EAEIRRVREELLQQAKQNDSLA
Sbjct: 61  KEAEIRRVREELLQQAKQNDSLA 63

[Close]

BLAST of Clc08G18205 vs. TAIR 10
Match: AT1G67785.1 (unknown protein; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.5 bits (197), Expect = 1.7e-15
Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 118 MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEKKSGKKENPRWQRFPSLFLDIKERLE 177
           MVKV T+F M+L AF FWQSMDK+HVWIAL QDEK                    +ER+E
Sbjct: 1   MVKVLTYFGMTLAAFAFWQSMDKVHVWIALHQDEK--------------------QERME 60

Query: 178 REAEIRRVREELLQQAKQNDSLA 201
           +EAE+RRVR ELL++A++ D LA
Sbjct: 61  KEAEVRRVRAELLRKAREEDPLA 63

The following BLAST results are available for this feature:

BLAST of Clc08G18205 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962438.1	4.8e-20	75.90	uncharacterized protein LOC111462876 [Cucurbita moschata] >XP_022996773.1 unchar...	[more]
XP_038885062.1	1.1e-19	74.70	uncharacterized protein LOC120075596 [Benincasa hispida]	[more]
KGN62333.1	1.1e-19	74.70	hypothetical protein Csa_018655 [Cucumis sativus]	[more]
XP_016899934.1	1.8e-19	73.49	PREDICTED: uncharacterized protein LOC103487730 [Cucumis melo] >KAA0061049.1 unc...	[more]
XP_023537427.1	2.4e-19	74.70	uncharacterized protein LOC111798484 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc08G18205 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc08G18205 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KBZ1	2.3e-20	75.90	uncharacterized protein LOC111491907 OS=Cucurbita maxima OX=3661 GN=LOC111491907...	[more]
A0A6J1HET5	2.3e-20	75.90	uncharacterized protein LOC111462876 OS=Cucurbita moschata OX=3662 GN=LOC1114628...	[more]
A0A0A0LKK4	5.2e-20	74.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G349670 PE=4 SV=1	[more]
A0A5A7V5Q7	8.8e-20	73.49	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S4DVC2	8.8e-20	73.49	uncharacterized protein LOC103487730 OS=Cucumis melo OX=3656 GN=LOC103487730 PE=...	[more]

BLAST of Clc08G18205 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67785.1	1.7e-15	53.01	unknown protein; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37711	OS01G0908400 PROTEIN	coord: 173..200 coord: 106..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G18205.1	Clc08G18205.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane