Clc05G17065 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G17065
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	ClcChr05: 25436317 .. 25437569 (-)
RNA-Seq Expression	Clc05G17065
Synteny	Clc05G17065

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTCTTGGACAATGGATGTAGGTCTTAGGGTTGAACCACCATAATTTGCTTGTTTGATCTTCTCTGATCATCTACTTCTAGATTTTTCTTATAATTTTGGCAAGAACCAAGTGAGTACTGGAGTTTAATTCTCTGTTTTTACATGTTTGAAAGGGAAAGTGATTTGTGATCTGATTTCTTTTTTAGTTTTTTTTTTTCTTATTGAAGAGTATACAAAGGGTTAGTACTGTTTTGTTTAGCTAACACGTGTAAAGAACTTAGATATACATTGTTCTTTTATTTTAAAGTGGTATCAGAGCCTTTGAAACTCTTTAATAGCAGTAAAGAGATATGAGATCGATAAATTCACTGGAAATGGAGATTTCAGTTTATGGTCAAAGAAAATCAAAATTATACTTACTCATTAGAAGGCTTTAAGAGGATTAGATGATCCTAAAACACTACCTAGAAATCTTACTGCTGAAGAGAAACCAAATATAGAAGAAGTTGCTTATAGAACCTTAATGTTGAATATTTATGATAATGTAATGGGAGAAGTAATTGATGAATCTTGTGTTCATGATGTTTGCAATAGATTTCATGCCTTGTATGTTAGAAAGGACCTACCTAATAAGATTTTTCTTAGAGAAAGGTTGTTCTCTTTCAAGATGAATGCAACCAAAACCATGGATGAAAACTTAGATGAATTTAAGAAGTTAACCTCTAAAAGTTGGGTAGTGAGAGTGAAGCAACCATTCTAATTTAACTCACTACCTGATTCTTATAAAGATAAATATGAAAGAGATATCATTACTACTAATGCTGTTATTACAGCTATAAGATGTAAAGAACTTGAGTTTAAAACTGAAACTAAAGCTTCTAGCAGTGGAAGAGGCCCTGTTTTCAAAAGGGAAAAACAACTACTATAAGAAAAATAAGTTTGTGAAAGGCCAGAGGTTTCATAAATCAAAAGCATCCCTTAAGTTCTTTAATTGTCACAAAGGGTATTTTAAGAGGAATTATCCAGAGCTAAAGAGGAAGCCTGATAAGAAATCTAAGGAACACAGTAAAGCTGATTTCTCTATTGGAGATGAAGGTTATGATTATACTGAGGTTCTTGCAGCGAATAATGAAAAGACCATGACCGAAAGAACTAAGGAAAGGAAGATTTGGTGTTTGACTCCGAGTGTACCTTTCATATGACTCCTCTAAAGGAGTGGTTAGTGGAAAAACTTGTGGGATGGAGGCTCAGTGTTCATGGGAAATGA

mRNA sequence

ATGGCTGCTCTTGGACAATGGATAGGATTAGATGATCCTAAAACACTACCTAGAAATCTTACTGCTGAAGAGAAACCAAATATAGAAGAAGTTGCTTATAGAACCTTAATGTTGAATATTTATGATAATGTAATGGGAGAAGTAATTGATGAATCTTGTGTTCATGATGTTTGCAATAGATTTCATGCCTTGTATGTTAGAAAGGACCTACCTAATAAGATTTTTCTTAGAGAAAGGTTGTTCTCTTTCAAGATGAATGCAACCAAAACCATGGATGAAAACTTAGATGAATTTAAGAAGTTAACCTCTAAAAGTTGGAACTTGAGTTTAAAACTGAAACTAAAGCTTCTAGCAGTGGAAGAGGCCCTGTTTTCAAAAGGGAAAAACAACTACTATAAGAAAAATAAGTTTGTGAAAGGCCAGAGGTTTCATAAATCAAAAGCATCCCTTAAGTTCTTTAATTGTCACAAAGGGTATTTTAAGAGGAATTATCCAGAGCTAAAGAGGAAGCCTGATAAGAAATCTAAGGAACACAGTAAAGCTGATTTCTCTATTGGAGATGAAGGTTATGATTATACTGAGGTTCTTGCAGCGAATAATGAAAAGACCATGACCGAAAGAACTAAGGAAAGGAAGATTTGGTGTTTGACTCCGAGTGAGTGGTTAGTGGAAAAACTTGTGGGATGGAGGCTCAGTGTTCATGGGAAATGA

Coding sequence (CDS)

ATGGCTGCTCTTGGACAATGGATAGGATTAGATGATCCTAAAACACTACCTAGAAATCTTACTGCTGAAGAGAAACCAAATATAGAAGAAGTTGCTTATAGAACCTTAATGTTGAATATTTATGATAATGTAATGGGAGAAGTAATTGATGAATCTTGTGTTCATGATGTTTGCAATAGATTTCATGCCTTGTATGTTAGAAAGGACCTACCTAATAAGATTTTTCTTAGAGAAAGGTTGTTCTCTTTCAAGATGAATGCAACCAAAACCATGGATGAAAACTTAGATGAATTTAAGAAGTTAACCTCTAAAAGTTGGAACTTGAGTTTAAAACTGAAACTAAAGCTTCTAGCAGTGGAAGAGGCCCTGTTTTCAAAAGGGAAAAACAACTACTATAAGAAAAATAAGTTTGTGAAAGGCCAGAGGTTTCATAAATCAAAAGCATCCCTTAAGTTCTTTAATTGTCACAAAGGGTATTTTAAGAGGAATTATCCAGAGCTAAAGAGGAAGCCTGATAAGAAATCTAAGGAACACAGTAAAGCTGATTTCTCTATTGGAGATGAAGGTTATGATTATACTGAGGTTCTTGCAGCGAATAATGAAAAGACCATGACCGAAAGAACTAAGGAAAGGAAGATTTGGTGTTTGACTCCGAGTGAGTGGTTAGTGGAAAAACTTGTGGGATGGAGGCTCAGTGTTCATGGGAAATGA

Protein sequence

MAALGQWIGLDDPKTLPRNLTAEEKPNIEEVAYRTLMLNIYDNVMGEVIDESCVHDVCNRFHALYVRKDLPNKIFLRERLFSFKMNATKTMDENLDEFKKLTSKSWNLSLKLKLKLLAVEEALFSKGKNNYYKKNKFVKGQRFHKSKASLKFFNCHKGYFKRNYPELKRKPDKKSKEHSKADFSIGDEGYDYTEVLAANNEKTMTERTKERKIWCLTPSEWLVEKLVGWRLSVHGK

Homology

[Close]

BLAST of Clc05G17065 vs. NCBI nr
Match: TYK27723.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 1.3e-29
Identity = 100/283 (35.34%), Postives = 141/283 (49.82%), Query Frame = 0


Query: 10  LDDPKTLPRNLTAEEKPNIEEVAYRTLMLNIYDNVMGEVIDESCVHDVCNRFHALYVRKD 69
           L+DPK LP  LT  E+  +EEVAY TL++NI DNV+ +VI+E+          +LY +KD
Sbjct: 37  LEDPKELPATLTKSERETLEEVAYSTLIMNITDNVLRQVIEETTGFATWEILKSLYEKKD 96

Query: 70  LPNKIFLRERLFSFKMNATKTMDENLDEFKKLTS-------------------------- 129
           L NK+F+RE+LFSFKMN  K +DENLDEFKKLT+                          
Sbjct: 97  LSNKMFIREKLFSFKMNQNKNLDENLDEFKKLTNALNQTREKLGAESEAAILINLIHDTY 156

Query: 130 -----------------------KSWNLSLKLKLKLLAVEEALFSKGKNNYYKKNKFVKG 189
                                  KS  L LK + K     E+LFSKG N++ K +   K 
Sbjct: 157 KEVKTSLKYGRETITVNSVITALKSKELELKTENKTSNAAESLFSKGNNSFRKNSN--KN 216

Query: 190 QRFHKSKASLKFFNCHK-GYFKRNYPE----LKRKPDKKSKEHSKADFS----------- 217
           QR  + K +LK F CHK G+FKRN P+     +R  +++ + + + DF+           
Sbjct: 217 QRSSRDKPALKCFICHKEGHFKRNCPDRGKNFRRDENRRYRPYGREDFNRNRNYQREDQI 276

[Close]

BLAST of Clc05G17065 vs. NCBI nr
Match: KAA0051442.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK22211.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 8.4e-24
Identity = 81/235 (34.47%), Postives = 125/235 (53.19%), Query Frame = 0


Query: 10  LDDPKTLPRNLTAEEKPNIEEVAYRTLMLNIYDNVMGEVIDESCVHDVCNRFHALYVRKD 69
           L+DPK LP  LT  E+  +EEVAY TL++NI DNV+ +VI+E+       +  +LY +KD
Sbjct: 37  LEDPKELPATLTKSERETLEEVAYSTLIMNITDNVLRQVIEETTAFATWEKLKSLYEKKD 96

Query: 70  LPNKIFLRERLFSFKMNATKTMDENLDEFKKLTS-------------------------- 129
           LPNK+F++E+LFSFK N  K +DENLDEFKKLT+                          
Sbjct: 97  LPNKMFIKEKLFSFKKNQNKNLDENLDEFKKLTNALNQTGEKLGAENEAAILINSIHDTY 156

Query: 130 KSWNLSLKLKLKLLAVEEALFS-KGK----NNYYKKNKFVKGQRFHKSKASLKFFNCHKG 189
           K     LK   + + V   + + K K        K +   +G+ F + + + ++    + 
Sbjct: 157 KEVKTGLKYGRETITVNSVITTLKSKELELKTENKTSNAAEGKNFRRDE-NRRYRPYGRE 216

Query: 190 YFKRNYPELKRKPDKKSKEHSKADFSIGDEGYDYTEVLAANNEKTMTERTKERKI 214
            F RN    +R+  ++ +EH +    +G+E ++YTEVLAA N+K M   T+E  +
Sbjct: 217 DFNRNRNH-QREDRRRGREHGRDHRPVGNEAFEYTEVLAATNKKAMEIETEEEDL 269

[Close]

BLAST of Clc05G17065 vs. NCBI nr
Match: KAA0060284.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] >TYK22034.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 5.5e-23
Identity = 73/201 (36.32%), Postives = 111/201 (55.22%), Query Frame = 0


Query: 10  LDDPKTLPRNLTAEEKPNIEEVAYRTLMLNIYDNVMGEVIDESCVHDVCNRFHALYVRKD 69
           L+DPK L   LT  E+  +EEVAY TL++NI +NV+ ++I+E+       +  +LY +KD
Sbjct: 37  LEDPKELLATLTKSERETLEEVAYGTLIMNITENVLRQIIEETTAFVTWEKLKSLYEKKD 96

Query: 70  LPNKIFLRERLFSFKMNATKTMDENLDEFKKLTSKSWNLSLKLKLKLLAVEEALFSKGKN 129
           LPNK+F+R++LFSFKMN  K +DE LDEFKKLT+       KL+++    E A+     +
Sbjct: 97  LPNKMFIRDKLFSFKMNQNKNLDETLDEFKKLTNALNQTEEKLRVE---SEAAILINSIH 156

Query: 130 NYYKKNKFVKGQRFHKSKASLKFFNCHKGYFKRNYPELKRKPDKKSKEHSKADFSIGDEG 189
           + YK           + K +LK                  K  ++ +EH      +G++ 
Sbjct: 157 DIYK-----------EVKTTLK------------------KDQRRGREHGGNHGPVGNKA 205

Query: 190 YDYTEVLAANNEKTMTERTKE 211
           ++YTEVLA  N+K M   T+E
Sbjct: 217 FEYTEVLATTNKKAMEIETEE 205

[Close]

BLAST of Clc05G17065 vs. NCBI nr
Match: KAA0040138.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 4.6e-22
Identity = 58/127 (45.67%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 10  LDDPKTLPRNLTAEEKPNIEEVAYRTLMLNIYDNVMGEVIDESCVHDVCNRFHALYVRKD 69
           + DPK LP  +   +K ++EE  Y  L+LNI DNV+ +VI+E+  +++C +  ALY +KD
Sbjct: 37  IQDPKNLPATMNEVDKQSMEETTYEILILNITDNVLRQVINENTTYEICEKLTALYDKKD 96

Query: 70  LPNKIFLRERLFSFKMNATKTMDENLDEFKKLTSKSWNLSLKLKLKLLAVEEALFSKGKN 129
           LP+K+++RE+LFSFKMN +KT++ENLDEFKKLT++   L  KL+ +    E A+F    +
Sbjct: 97  LPSKLYMREKLFSFKMNQSKTLNENLDEFKKLTNEFNQLGEKLRAE---SEAAIFINSLH 156

Query: 130 NYYKKNK 137
           + YK+ K
Sbjct: 157 DTYKEVK 160

[Close]

BLAST of Clc05G17065 vs. NCBI nr
Match: TYK12279.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-20
Identity = 83/245 (33.88%), Postives = 113/245 (46.12%), Query Frame = 0


Query: 47  EVIDESCVHDVCNRFHALYVRKDLPNKIFLRERLFSFKMNATKTMDENLDEFKKLTS--- 106
           +VI+E+       +  +LY +KDLPNK+F+RE+LFSFKMN  K +DENLDEFKK T+   
Sbjct: 597 KVIEETIAFATWEKLKSLYEKKDLPNKMFIREKLFSFKMNQNKNLDENLDEFKKFTNALN 656

Query: 107 ---------------------------------------------KSWNLSLKLKLKLLA 166
                                                        KS  L LK + K   
Sbjct: 657 QTREKLGAGEAAILINSIHDTYKEVKTALKYGRETITVNSVITALKSKELELKTENKTSN 716

Query: 167 VEEALFSKGKNNYYKKNKFVKGQRFHKSKASLKFFNCHK-GYFKRNYPE----------- 217
             E+LFSKGKN++ K N   K QR  K K +LK F CHK G+FKRN P+           
Sbjct: 717 AAESLFSKGKNSFRKNN---KNQRSSKDKPALKCFICHKEGHFKRNCPDRGKNFRRDENR 776

[Close]

BLAST of Clc05G17065 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-06
Identity = 59/271 (21.77%), Postives = 118/271 (43.54%), Query Frame = 0


Query: 10  LDDPKTLPRNLTAEEKPNIEEVAYRTLMLNIYDNVMGEVIDESCVHDVCNRFHALYVRKD 69
           LD     P  + AE+  +++E A   + L++ D+V+  +IDE     +  R  +LY+ K 
Sbjct: 37  LDVDSKKPDTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKT 96

Query: 70  LPNKIFLRERLFSFKMNATKTMDENLDEFKKLTSKSWNLSLKLKLKLLAV---------- 129
           L NK++L+++L++  M+       +L+ F  L ++  NL +K++ +  A+          
Sbjct: 97  LTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSY 156

Query: 130 ------------------------------------EEALFSKGKNNYYKKN------KF 189
                                                +AL ++G+   Y+++        
Sbjct: 157 DNLATTILHGKTTIELKDVTSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSG 216

Query: 190 VKGQRFHKSKASLK-FFNCHK-GYFKRNYPELKRKPDKKSKEHSKADFSIGDEGYDYTEV 225
            +G+  ++SK+ ++  +NC++ G+FKR+ P     P K   E S      G +  D T  
Sbjct: 217 ARGKSKNRSKSRVRNCYNCNQPGHFKRDCP----NPRKGKGETS------GQKNDDNTAA 276

[Close]

BLAST of Clc05G17065 vs. ExPASy TrEMBL
Match: A0A5D3DVM0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00690 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.5e-30
Identity = 100/283 (35.34%), Postives = 141/283 (49.82%), Query Frame = 0


Query: 10  LDDPKTLPRNLTAEEKPNIEEVAYRTLMLNIYDNVMGEVIDESCVHDVCNRFHALYVRKD 69
           L+DPK LP  LT  E+  +EEVAY TL++NI DNV+ +VI+E+          +LY +KD
Sbjct: 37  LEDPKELPATLTKSERETLEEVAYSTLIMNITDNVLRQVIEETTGFATWEILKSLYEKKD 96

Query: 70  LPNKIFLRERLFSFKMNATKTMDENLDEFKKLTS-------------------------- 129
           L NK+F+RE+LFSFKMN  K +DENLDEFKKLT+                          
Sbjct: 97  LSNKMFIREKLFSFKMNQNKNLDENLDEFKKLTNALNQTREKLGAESEAAILINLIHDTY 156

Query: 130 -----------------------KSWNLSLKLKLKLLAVEEALFSKGKNNYYKKNKFVKG 189
                                  KS  L LK + K     E+LFSKG N++ K +   K 
Sbjct: 157 KEVKTSLKYGRETITVNSVITALKSKELELKTENKTSNAAESLFSKGNNSFRKNSN--KN 216

Query: 190 QRFHKSKASLKFFNCHK-GYFKRNYPE----LKRKPDKKSKEHSKADFS----------- 217
           QR  + K +LK F CHK G+FKRN P+     +R  +++ + + + DF+           
Sbjct: 217 QRSSRDKPALKCFICHKEGHFKRNCPDRGKNFRRDENRRYRPYGREDFNRNRNYQREDQI 276

[Close]

BLAST of Clc05G17065 vs. ExPASy TrEMBL
Match: A0A5A7U6R2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00930 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.1e-24
Identity = 81/235 (34.47%), Postives = 125/235 (53.19%), Query Frame = 0


Query: 10  LDDPKTLPRNLTAEEKPNIEEVAYRTLMLNIYDNVMGEVIDESCVHDVCNRFHALYVRKD 69
           L+DPK LP  LT  E+  +EEVAY TL++NI DNV+ +VI+E+       +  +LY +KD
Sbjct: 37  LEDPKELPATLTKSERETLEEVAYSTLIMNITDNVLRQVIEETTAFATWEKLKSLYEKKD 96

Query: 70  LPNKIFLRERLFSFKMNATKTMDENLDEFKKLTS-------------------------- 129
           LPNK+F++E+LFSFK N  K +DENLDEFKKLT+                          
Sbjct: 97  LPNKMFIKEKLFSFKKNQNKNLDENLDEFKKLTNALNQTGEKLGAENEAAILINSIHDTY 156

Query: 130 KSWNLSLKLKLKLLAVEEALFS-KGK----NNYYKKNKFVKGQRFHKSKASLKFFNCHKG 189
           K     LK   + + V   + + K K        K +   +G+ F + + + ++    + 
Sbjct: 157 KEVKTGLKYGRETITVNSVITTLKSKELELKTENKTSNAAEGKNFRRDE-NRRYRPYGRE 216

Query: 190 YFKRNYPELKRKPDKKSKEHSKADFSIGDEGYDYTEVLAANNEKTMTERTKERKI 214
            F RN    +R+  ++ +EH +    +G+E ++YTEVLAA N+K M   T+E  +
Sbjct: 217 DFNRNRNH-QREDRRRGREHGRDHRPVGNEAFEYTEVLAATNKKAMEIETEEEDL 269

[Close]

BLAST of Clc05G17065 vs. ExPASy TrEMBL
Match: A0A5A7UZ07 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00070 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.6e-23
Identity = 73/201 (36.32%), Postives = 111/201 (55.22%), Query Frame = 0


Query: 10  LDDPKTLPRNLTAEEKPNIEEVAYRTLMLNIYDNVMGEVIDESCVHDVCNRFHALYVRKD 69
           L+DPK L   LT  E+  +EEVAY TL++NI +NV+ ++I+E+       +  +LY +KD
Sbjct: 37  LEDPKELLATLTKSERETLEEVAYGTLIMNITENVLRQIIEETTAFVTWEKLKSLYEKKD 96

Query: 70  LPNKIFLRERLFSFKMNATKTMDENLDEFKKLTSKSWNLSLKLKLKLLAVEEALFSKGKN 129
           LPNK+F+R++LFSFKMN  K +DE LDEFKKLT+       KL+++    E A+     +
Sbjct: 97  LPNKMFIRDKLFSFKMNQNKNLDETLDEFKKLTNALNQTEEKLRVE---SEAAILINSIH 156

Query: 130 NYYKKNKFVKGQRFHKSKASLKFFNCHKGYFKRNYPELKRKPDKKSKEHSKADFSIGDEG 189
           + YK           + K +LK                  K  ++ +EH      +G++ 
Sbjct: 157 DIYK-----------EVKTTLK------------------KDQRRGREHGGNHGPVGNKA 205

Query: 190 YDYTEVLAANNEKTMTERTKE 211
           ++YTEVLA  N+K M   T+E
Sbjct: 217 FEYTEVLATTNKKAMEIETEE 205

[Close]

BLAST of Clc05G17065 vs. ExPASy TrEMBL
Match: A0A5A7TAZ3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold768G00070 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.2e-22
Identity = 58/127 (45.67%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 10  LDDPKTLPRNLTAEEKPNIEEVAYRTLMLNIYDNVMGEVIDESCVHDVCNRFHALYVRKD 69
           + DPK LP  +   +K ++EE  Y  L+LNI DNV+ +VI+E+  +++C +  ALY +KD
Sbjct: 37  IQDPKNLPATMNEVDKQSMEETTYEILILNITDNVLRQVINENTTYEICEKLTALYDKKD 96

Query: 70  LPNKIFLRERLFSFKMNATKTMDENLDEFKKLTSKSWNLSLKLKLKLLAVEEALFSKGKN 129
           LP+K+++RE+LFSFKMN +KT++ENLDEFKKLT++   L  KL+ +    E A+F    +
Sbjct: 97  LPSKLYMREKLFSFKMNQSKTLNENLDEFKKLTNEFNQLGEKLRAE---SEAAIFINSLH 156

Query: 130 NYYKKNK 137
           + YK+ K
Sbjct: 157 DTYKEVK 160

[Close]

BLAST of Clc05G17065 vs. ExPASy TrEMBL
Match: A0A5D3CPM8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00430 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.5e-21
Identity = 83/245 (33.88%), Postives = 113/245 (46.12%), Query Frame = 0


Query: 47  EVIDESCVHDVCNRFHALYVRKDLPNKIFLRERLFSFKMNATKTMDENLDEFKKLTS--- 106
           +VI+E+       +  +LY +KDLPNK+F+RE+LFSFKMN  K +DENLDEFKK T+   
Sbjct: 597 KVIEETIAFATWEKLKSLYEKKDLPNKMFIREKLFSFKMNQNKNLDENLDEFKKFTNALN 656

Query: 107 ---------------------------------------------KSWNLSLKLKLKLLA 166
                                                        KS  L LK + K   
Sbjct: 657 QTREKLGAGEAAILINSIHDTYKEVKTALKYGRETITVNSVITALKSKELELKTENKTSN 716

Query: 167 VEEALFSKGKNNYYKKNKFVKGQRFHKSKASLKFFNCHK-GYFKRNYPE----------- 217
             E+LFSKGKN++ K N   K QR  K K +LK F CHK G+FKRN P+           
Sbjct: 717 AAESLFSKGKNSFRKNN---KNQRSSKDKPALKCFICHKEGHFKRNCPDRGKNFRRDENR 776

The following BLAST results are available for this feature:

BLAST of Clc05G17065 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27723.1	1.3e-29	35.34	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0051442.1	8.4e-24	34.47	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0060284.1	5.5e-23	36.32	retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]...	[more]
KAA0040138.1	4.6e-22	45.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK12279.1	1.1e-20	33.88	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]

BLAST of Clc05G17065 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.3e-06	21.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Clc05G17065 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DVM0	6.5e-30	35.34	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7U6R2	4.1e-24	34.47	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UZ07	2.6e-23	36.32	Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw...	[more]
A0A5A7TAZ3	2.2e-22	45.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CPM8	5.5e-21	33.88	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Clc05G17065 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 30..104 e-value: 2.3E-9 score: 37.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G17065.1	Clc05G17065.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0003824	catalytic activity