Clc09G19063 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G19063
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	L10-interacting MYB domain-containing protein-like
Location	ClcChr09: 31972328 .. 31973122 (+)
RNA-Seq Expression	Clc09G19063
Synteny	Clc09G19063

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAACCAACTAAATGCTAGTACTACTCATGATCAACTGAAAAATAAGTTTAGCAAATTACGACAAATTTACAAAGATTTCAAAAAGATATTGAGTGATATGACAAAAAATGGTTGGGATCCATTGTTGGGTACTATCACTCTAAAAATGGAATGATCATTTTAAGGTATAATTAAAAATCGCAAGTGCTTTTTCTTTTCTATTTCTAATCACTATTGAATTATGGTTGATGTTATATATTGTTGTGCTACTTCTTATGGGGGAATAAGAGAGCTAAAAAGTTTTAAAAAAATGGTAATCACCCACATTATGTAAAGCTTATGAGGATTCTTGGAGATACTACTACTAAAGGTGTAAATGCTTGTCCATCAACAAAGCTTCCTTTAGATTCTGAAGATGAAAATAATGTTGGAAGTAATACGAACTTTGTTGGTGAAGAAAATGACAATGAAAAAAAGTGGAAAACGAGTTCGAAGGAAGAGAGACGAATTTGGGAATTTCCTTTCTTCATTTATAGATGTGTATGCTGAGAACGCAAAGAGAAAACATGACATCCTGGAGTAAAGAACTCATAGTTCTACTGCTAGTCATGTTGACGAGGGCCAATCATCAGGGAAAAAAGATGTTGATGAAGAGCTGATGGAATGTTTCAAAATTTTAAATACAATGGAGGATATTTATGGAGAGTTTTATACTAAAGTATTGAAACTTCTGCATGGAGATCTTGCTTGGAGAAAATTATTTTTGCACATACCTGATGCAAGCAAGAAAGATTTCATAAACAATATCTAG

mRNA sequence

ATGAGAAACCAACTAAATGCTAGTACTACTCATGATCAACTGAAAAATAAGTTTAGCAAATTACGACAAATTTACAAAGATTTCAAAAAGATATTGAGTGATATGACAAAAAATGGTTGGGATCCATTGTTGGTAATACGAACTTTGTTGGTGAAGAAAATGACAATGAAAAAAAGTGGAAAACGAGTTCGAAGGAAGAGAGACGAATTTGGGAATTTCCTTTCTTCATTTATAGATGTGTATGCTGAGAACGCAAAGAGAAAACATGACATCCTGGAAACTCATAGTTCTACTGCTAGTCATGTTGACGAGGGCCAATCATCAGGGAAAAAAGATGTTGATGAAGAGCTGATGGAATGTTTCAAAATTTTAAATACAATGGAGGATATTTATGGAGAGTTTTATACTAAAGTATTGAAACTTCTGCATGGAGATCTTGCTTGGAGAAAATTATTTTTGCACATACCTGATGCAAGCAAGAAAGATTTCATAAACAATATCTAG

Coding sequence (CDS)

ATGAGAAACCAACTAAATGCTAGTACTACTCATGATCAACTGAAAAATAAGTTTAGCAAATTACGACAAATTTACAAAGATTTCAAAAAGATATTGAGTGATATGACAAAAAATGGTTGGGATCCATTGTTGGTAATACGAACTTTGTTGGTGAAGAAAATGACAATGAAAAAAAGTGGAAAACGAGTTCGAAGGAAGAGAGACGAATTTGGGAATTTCCTTTCTTCATTTATAGATGTGTATGCTGAGAACGCAAAGAGAAAACATGACATCCTGGAAACTCATAGTTCTACTGCTAGTCATGTTGACGAGGGCCAATCATCAGGGAAAAAAGATGTTGATGAAGAGCTGATGGAATGTTTCAAAATTTTAAATACAATGGAGGATATTTATGGAGAGTTTTATACTAAAGTATTGAAACTTCTGCATGGAGATCTTGCTTGGAGAAAATTATTTTTGCACATACCTGATGCAAGCAAGAAAGATTTCATAAACAATATCTAG

Protein sequence

MRNQLNASTTHDQLKNKFSKLRQIYKDFKKILSDMTKNGWDPLLVIRTLLVKKMTMKKSGKRVRRKRDEFGNFLSSFIDVYAENAKRKHDILETHSSTASHVDEGQSSGKKDVDEELMECFKILNTMEDIYGEFYTKVLKLLHGDLAWRKLFLHIPDASKKDFINNI

Homology

[Close]

BLAST of Clc09G19063 vs. NCBI nr
Match: XP_008461742.1 (PREDICTED: L10-interacting MYB domain-containing protein-like [Cucumis melo])

HSP 1 Score: 186.4 bits (472), Expect = 2.0e-43
Identity = 106/198 (53.54%), Postives = 133/198 (67.17%), Query Frame = 0


Query: 1   MRNQLNAST----THDQLKNKFSKLRQIYKDFKKILSDMTKNGWDPLLVI---------- 60
           MR++LNA+T    +HDQLKNKF+KLR+I K FKKILSDMT NGWDPL  +          
Sbjct: 48  MRSELNANTGYNYSHDQLKNKFNKLRKICKAFKKILSDMTGNGWDPLFGVIACPSTRLIS 107

Query: 61  -------------RTLLVKKMTMKKSGKRVRRKRDEFGNFLSSFIDVYAENAKRKHDILE 120
                          + V++    KS KRVRR RDEF +F S F+++YAENA R +DILE
Sbjct: 108 DFEDENENDVARNTKIGVEENDKGKSKKRVRRNRDEFDSFFSPFLNIYAENAMRNNDILE 167

Query: 121 THS--STASHVDEGQSSGKKDVD--EELMECFKILNTMEDIYGEFYTKVLKLLHGDLAWR 168
             S   T+S VDE Q+S KKD D  EELMEC  IL+TMED+ G+ Y+K+LKLLH DL WR
Sbjct: 168 KRSFGCTSSEVDESQTSSKKDDDLHEELMECLDILHTMEDVDGDTYSKILKLLHRDLDWR 227

[Close]

BLAST of Clc09G19063 vs. NCBI nr
Match: TYJ96795.1 (L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa] >TYK00864.1 L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa] >TYK19200.1 L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 157.5 bits (397), Expect = 9.8e-35
Identity = 82/141 (58.16%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 30  KILSDMTKNGWDPLLVIRTLLVKKMTMKKSGKRVRRKRDEFGNFLSSFIDVYAENAKRKH 89
           +++SD      + +     + V++    KS KR RRK+DEFG+F SSF+DVYAENAKRK+
Sbjct: 63  RLISDSEDENENDVASNTNVGVEENNKGKSKKRFRRKKDEFGSFFSSFLDVYAENAKRKN 122

Query: 90  DILETHS--STASHVDEGQSSGKK-DVDEELMECFKILNTMEDIYGEFYTKVLKLLHGDL 149
           DILE  S   T+S VDE Q+S KK D+ EELMEC  ILNTMED+ GE Y+K+LKLLHGDL
Sbjct: 123 DILEKRSFGCTSSQVDESQTSNKKDDLHEELMECLDILNTMEDVDGEAYSKILKLLHGDL 182

Query: 150 AWRKLFLHIPDASKKDFINNI 168
           AWRKLFL +PD+ K+DFIN++
Sbjct: 183 AWRKLFLRMPDSRKRDFINSL 203

[Close]

BLAST of Clc09G19063 vs. NCBI nr
Match: TYK21097.1 (L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 157.5 bits (397), Expect = 9.8e-35
Identity = 82/141 (58.16%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 30  KILSDMTKNGWDPLLVIRTLLVKKMTMKKSGKRVRRKRDEFGNFLSSFIDVYAENAKRKH 89
           +++SD      + +     + V++    KS KR RRK+DEFG+F SSF+DVYAENAKRK+
Sbjct: 135 RLISDSEDENENDVASNTNVGVEENNKGKSKKRFRRKKDEFGSFFSSFLDVYAENAKRKN 194

Query: 90  DILETHS--STASHVDEGQSSGKK-DVDEELMECFKILNTMEDIYGEFYTKVLKLLHGDL 149
           DILE  S   T+S VDE Q+S KK D+ EELMEC  ILNTMED+ GE Y+K+LKLLHGDL
Sbjct: 195 DILEKRSFGCTSSQVDESQTSNKKDDLHEELMECLDILNTMEDVDGEAYSKILKLLHGDL 254

Query: 150 AWRKLFLHIPDASKKDFINNI 168
           AWRKLFL +PD+ K+DFIN++
Sbjct: 255 AWRKLFLRMPDSRKRDFINSL 275

[Close]

BLAST of Clc09G19063 vs. NCBI nr
Match: TYK06268.1 (L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 157.5 bits (397), Expect = 9.8e-35
Identity = 82/141 (58.16%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 30  KILSDMTKNGWDPLLVIRTLLVKKMTMKKSGKRVRRKRDEFGNFLSSFIDVYAENAKRKH 89
           +++SD      + +     + V++    KS KR RRK+DEFG+F SSF+DVYAENAKRK+
Sbjct: 63  RLISDSEDENENDVASNTNVGVEENNKGKSKKRFRRKKDEFGSFFSSFLDVYAENAKRKN 122

Query: 90  DILETHS--STASHVDEGQSSGKK-DVDEELMECFKILNTMEDIYGEFYTKVLKLLHGDL 149
           DILE  S   T+S VDE Q+S KK D+ EELMEC  ILNTMED+ GE Y+K+LKLLHGDL
Sbjct: 123 DILEKRSFGCTSSQVDESQTSNKKDDLHEELMECLDILNTMEDVDGEAYSKILKLLHGDL 182

Query: 150 AWRKLFLHIPDASKKDFINNI 168
           AWRKLFL +PD+ K+DFIN++
Sbjct: 183 AWRKLFLRMPDSRKRDFINSL 203

[Close]

BLAST of Clc09G19063 vs. NCBI nr
Match: KAA0053615.1 (L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 2.2e-34
Identity = 80/139 (57.55%), Postives = 102/139 (73.38%), Query Frame = 0


Query: 30  KILSDMTKNGWDPLLVIRTLLVKKMTMKKSGKRVRRKRDEFGNFLSSFIDVYAENAKRKH 89
           +++SD      + +     + V++    KS KR RRK+DEF +F SSF+DVYAENAKRK+
Sbjct: 63  RLISDSEDENENDVASNTNVGVEENNKGKSKKRFRRKKDEFDSFFSSFLDVYAENAKRKN 122

Query: 90  DILETHSSTASHVDEGQSSGKK-DVDEELMECFKILNTMEDIYGEFYTKVLKLLHGDLAW 149
           DILE  S   S VDE Q+S KK D+ EELMEC  ILNTMED+ GE Y+K+LKLLHGDLAW
Sbjct: 123 DILEKRSFGCSQVDESQTSNKKDDLHEELMECLDILNTMEDVDGEAYSKILKLLHGDLAW 182

Query: 150 RKLFLHIPDASKKDFINNI 168
           RKLFL +PD+ K+DFIN++
Sbjct: 183 RKLFLRMPDSRKRDFINSL 201

[Close]

BLAST of Clc09G19063 vs. ExPASy TrEMBL
Match: A0A1S3CFA7 (L10-interacting MYB domain-containing protein-like OS=Cucumis melo OX=3656 GN=LOC103500275 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 9.6e-44
Identity = 106/198 (53.54%), Postives = 133/198 (67.17%), Query Frame = 0


Query: 1   MRNQLNAST----THDQLKNKFSKLRQIYKDFKKILSDMTKNGWDPLLVI---------- 60
           MR++LNA+T    +HDQLKNKF+KLR+I K FKKILSDMT NGWDPL  +          
Sbjct: 48  MRSELNANTGYNYSHDQLKNKFNKLRKICKAFKKILSDMTGNGWDPLFGVIACPSTRLIS 107

Query: 61  -------------RTLLVKKMTMKKSGKRVRRKRDEFGNFLSSFIDVYAENAKRKHDILE 120
                          + V++    KS KRVRR RDEF +F S F+++YAENA R +DILE
Sbjct: 108 DFEDENENDVARNTKIGVEENDKGKSKKRVRRNRDEFDSFFSPFLNIYAENAMRNNDILE 167

Query: 121 THS--STASHVDEGQSSGKKDVD--EELMECFKILNTMEDIYGEFYTKVLKLLHGDLAWR 168
             S   T+S VDE Q+S KKD D  EELMEC  IL+TMED+ G+ Y+K+LKLLH DL WR
Sbjct: 168 KRSFGCTSSEVDESQTSSKKDDDLHEELMECLDILHTMEDVDGDTYSKILKLLHRDLDWR 227

[Close]

BLAST of Clc09G19063 vs. ExPASy TrEMBL
Match: A0A5D3BNQ5 (L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold233G00100 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 4.8e-35
Identity = 82/141 (58.16%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 30  KILSDMTKNGWDPLLVIRTLLVKKMTMKKSGKRVRRKRDEFGNFLSSFIDVYAENAKRKH 89
           +++SD      + +     + V++    KS KR RRK+DEFG+F SSF+DVYAENAKRK+
Sbjct: 63  RLISDSEDENENDVASNTNVGVEENNKGKSKKRFRRKKDEFGSFFSSFLDVYAENAKRKN 122

Query: 90  DILETHS--STASHVDEGQSSGKK-DVDEELMECFKILNTMEDIYGEFYTKVLKLLHGDL 149
           DILE  S   T+S VDE Q+S KK D+ EELMEC  ILNTMED+ GE Y+K+LKLLHGDL
Sbjct: 123 DILEKRSFGCTSSQVDESQTSNKKDDLHEELMECLDILNTMEDVDGEAYSKILKLLHGDL 182

Query: 150 AWRKLFLHIPDASKKDFINNI 168
           AWRKLFL +PD+ K+DFIN++
Sbjct: 183 AWRKLFLRMPDSRKRDFINSL 203

[Close]

BLAST of Clc09G19063 vs. ExPASy TrEMBL
Match: A0A5D3DBS2 (L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00630 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 4.8e-35
Identity = 82/141 (58.16%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 30  KILSDMTKNGWDPLLVIRTLLVKKMTMKKSGKRVRRKRDEFGNFLSSFIDVYAENAKRKH 89
           +++SD      + +     + V++    KS KR RRK+DEFG+F SSF+DVYAENAKRK+
Sbjct: 135 RLISDSEDENENDVASNTNVGVEENNKGKSKKRFRRKKDEFGSFFSSFLDVYAENAKRKN 194

Query: 90  DILETHS--STASHVDEGQSSGKK-DVDEELMECFKILNTMEDIYGEFYTKVLKLLHGDL 149
           DILE  S   T+S VDE Q+S KK D+ EELMEC  ILNTMED+ GE Y+K+LKLLHGDL
Sbjct: 195 DILEKRSFGCTSSQVDESQTSNKKDDLHEELMECLDILNTMEDVDGEAYSKILKLLHGDL 254

Query: 150 AWRKLFLHIPDASKKDFINNI 168
           AWRKLFL +PD+ K+DFIN++
Sbjct: 255 AWRKLFLRMPDSRKRDFINSL 275

[Close]

BLAST of Clc09G19063 vs. ExPASy TrEMBL
Match: A0A5D3C535 (L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00490 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 4.8e-35
Identity = 82/141 (58.16%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 30  KILSDMTKNGWDPLLVIRTLLVKKMTMKKSGKRVRRKRDEFGNFLSSFIDVYAENAKRKH 89
           +++SD      + +     + V++    KS KR RRK+DEFG+F SSF+DVYAENAKRK+
Sbjct: 63  RLISDSEDENENDVASNTNVGVEENNKGKSKKRFRRKKDEFGSFFSSFLDVYAENAKRKN 122

Query: 90  DILETHS--STASHVDEGQSSGKK-DVDEELMECFKILNTMEDIYGEFYTKVLKLLHGDL 149
           DILE  S   T+S VDE Q+S KK D+ EELMEC  ILNTMED+ GE Y+K+LKLLHGDL
Sbjct: 123 DILEKRSFGCTSSQVDESQTSNKKDDLHEELMECLDILNTMEDVDGEAYSKILKLLHGDL 182

Query: 150 AWRKLFLHIPDASKKDFINNI 168
           AWRKLFL +PD+ K+DFIN++
Sbjct: 183 AWRKLFLRMPDSRKRDFINSL 203

[Close]

BLAST of Clc09G19063 vs. ExPASy TrEMBL
Match: A0A5A7UIT7 (L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G001920 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.1e-34
Identity = 80/139 (57.55%), Postives = 102/139 (73.38%), Query Frame = 0


Query: 30  KILSDMTKNGWDPLLVIRTLLVKKMTMKKSGKRVRRKRDEFGNFLSSFIDVYAENAKRKH 89
           +++SD      + +     + V++    KS KR RRK+DEF +F SSF+DVYAENAKRK+
Sbjct: 63  RLISDSEDENENDVASNTNVGVEENNKGKSKKRFRRKKDEFDSFFSSFLDVYAENAKRKN 122

Query: 90  DILETHSSTASHVDEGQSSGKK-DVDEELMECFKILNTMEDIYGEFYTKVLKLLHGDLAW 149
           DILE  S   S VDE Q+S KK D+ EELMEC  ILNTMED+ GE Y+K+LKLLHGDLAW
Sbjct: 123 DILEKRSFGCSQVDESQTSNKKDDLHEELMECLDILNTMEDVDGEAYSKILKLLHGDLAW 182

Query: 150 RKLFLHIPDASKKDFINNI 168
           RKLFL +PD+ K+DFIN++
Sbjct: 183 RKLFLRMPDSRKRDFINSL 201

The following BLAST results are available for this feature:

BLAST of Clc09G19063 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461742.1	2.0e-43	53.54	PREDICTED: L10-interacting MYB domain-containing protein-like [Cucumis melo]	[more]
TYJ96795.1	9.8e-35	58.16	L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa] >T...	[more]
TYK21097.1	9.8e-35	58.16	L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa]	[more]
TYK06268.1	9.8e-35	58.16	L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa]	[more]
KAA0053615.1	2.2e-34	57.55	L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa]	[more]

BLAST of Clc09G19063 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G19063 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CFA7	9.6e-44	53.54	L10-interacting MYB domain-containing protein-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A5D3BNQ5	4.8e-35	58.16	L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa O...	[more]
A0A5D3DBS2	4.8e-35	58.16	L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa O...	[more]
A0A5D3C535	4.8e-35	58.16	L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa O...	[more]
A0A5A7UIT7	1.1e-34	57.55	L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa O...	[more]

BLAST of Clc09G19063 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47584	FAMILY NOT NAMED	coord: 76..166
None	No IPR available	PANTHER	PTHR47584:SF3	L10-INTERACTING MYB DOMAIN-CONTAINING PROTEIN-LIKE	coord: 76..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G19063.1	Clc09G19063.1	mRNA