Clc04G04770 (gene) Watermelon (cordophanus) v2

Overview
NameClc04G04770
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionproline-rich protein HaeIII subfamily 1-like
LocationClcChr04: 17163581 .. 17163940 (+)
RNA-Seq ExpressionClc04G04770
SyntenyClc04G04770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAAAATTTGATATGTATTCTAAAGGCCGCGTACCTATTCTTCCACCGGTCAACTCACATTCAACTCTACCACCTACTCCATTCACTGTTCTAGAAAAGGAATCGAAATTCAAATTTGGAATGTATCCTAAAGGTGTACCTATTCCTCCATCTGGACCGAGTGGAAGAACTTCGGCTGGCAAATATACTCCTCCGCCACCTCCATCTACGCCAAGTGAACGACCACGCTTTCCATGGGATGCACCTTGTCACCGTCCTAATCCGCCACGCTACTGCGTCCTATTACGACCACCGCCGCCATCCCCTCACTCTAGAGCTCCAATCATCGTTGATGTGATTACAAGTGTTGAGGATTAA

mRNA sequence

ATGCCAAAATTTGATATGTATTCTAAAGGCCGCGTACCTATTCTTCCACCGGTCAACTCACATTCAACTCTACCACCTACTCCATTCACTGTTCTAGAAAAGGAATCGAAATTCAAATTTGGAATGTATCCTAAAGGTGTACCTATTCCTCCATCTGGACCGAGTGGAAGAACTTCGGCTGGCAAATATACTCCTCCGCCACCTCCATCTACGCCAAGTGAACGACCACGCTTTCCATGGGATGCACCTTGTCACCGTCCTAATCCGCCACGCTACTGCGTCCTATTACGACCACCGCCGCCATCCCCTCACTCTAGAGCTCCAATCATCGTTGATGTGATTACAAGTGTTGAGGATTAA

Coding sequence (CDS)

ATGCCAAAATTTGATATGTATTCTAAAGGCCGCGTACCTATTCTTCCACCGGTCAACTCACATTCAACTCTACCACCTACTCCATTCACTGTTCTAGAAAAGGAATCGAAATTCAAATTTGGAATGTATCCTAAAGGTGTACCTATTCCTCCATCTGGACCGAGTGGAAGAACTTCGGCTGGCAAATATACTCCTCCGCCACCTCCATCTACGCCAAGTGAACGACCACGCTTTCCATGGGATGCACCTTGTCACCGTCCTAATCCGCCACGCTACTGCGTCCTATTACGACCACCGCCGCCATCCCCTCACTCTAGAGCTCCAATCATCGTTGATGTGATTACAAGTGTTGAGGATTAA

Protein sequence

MPKFDMYSKGRVPILPPVNSHSTLPPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTSAGKYTPPPPPSTPSERPRFPWDAPCHRPNPPRYCVLLRPPPPSPHSRAPIIVDVITSVED
Homology
BLAST of Clc04G04770 vs. NCBI nr
Match: KAG6603463.1 (hypothetical protein SDJN03_04072, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-17
Identity = 49/62 (79.03%), Postives = 51/62 (82.26%), Query Frame = 0

Query: 40  FGMYPKGVPIPPSGPSGRTSAGKYTPPPPPSTPSER-PRFPWDAPCHRPNPPRYCVLLRP 99
           F MYPKGVPIPPSG + RTSA KYTPPPPPS  S   PR PWD PCHRPNPPRYC+LLRP
Sbjct: 50  FVMYPKGVPIPPSGHNRRTSADKYTPPPPPSFGSHNPPRLPWDGPCHRPNPPRYCILLRP 109

Query: 100 PP 101
           PP
Sbjct: 110 PP 111

BLAST of Clc04G04770 vs. NCBI nr
Match: MBA0858619.1 (hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 61.2 bits (147), Expect = 6.8e-06
Identity = 38/72 (52.78%), Postives = 42/72 (58.33%), Query Frame = 0

Query: 3  KFDMYSKGRVPILPPV-NSHSTLPPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTSAG 62
          +F M  KG VPI P   +++   PP   T L      KFGM PKGVPIPPSGPS RTSA 
Sbjct: 18 RFGMLPKG-VPIPPSAPSTYLPFPPMILTSLSLSKSLKFGMLPKGVPIPPSGPSRRTSAS 77

Query: 63 KYTPPPPPSTPS 74
             PPPPP   S
Sbjct: 78 PPPPPPPPPLTS 88

BLAST of Clc04G04770 vs. NCBI nr
Match: XP_011654399.2 (proline-rich protein HaeIII subfamily 1-like [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 6.8e-06
Identity = 48/105 (45.71%), Postives = 57/105 (54.29%), Query Frame = 0

Query: 4   FDMYSKGRVPIL-PPVNSHSTLPPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTSAGK 63
           F +YSKG +P   P   +  + PP PF +L+K  KF FGMYPKG+PIPPSGPS RTS   
Sbjct: 47  FKVYSKGIIPPSGPSQRTSDSSPPPPFNILQK--KFDFGMYPKGIPIPPSGPSQRTSD-- 106

Query: 64  YTPPPPPSTPSERPRFPWDAPCHR-PNPPR----YCVLLRPPPPS 103
            + PPPPS       F +     R P PP           PPPPS
Sbjct: 107 -SSPPPPSNFFHHNTFGFGMYQRRVPIPPSGLNPRTSYSPPPPPS 146

BLAST of Clc04G04770 vs. NCBI nr
Match: XP_008442275.1 (PREDICTED: proline-rich protein HaeIII subfamily 1-like [Cucumis melo] >KAA0041826.1 proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK05348.1 proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 9.9e-05
Identity = 48/103 (46.60%), Postives = 57/103 (55.34%), Query Frame = 0

Query: 4   FDMYSKGRVPIL-PPVNSHSTLPPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTSAGK 63
           F MY KG VP   P   +  + PP PF +L  ++KF FGMYPKG+ +PPSGPS RTS   
Sbjct: 54  FKMYPKGIVPPSGPSQRTSDSSPPPPFNIL--QNKFDFGMYPKGI-VPPSGPSQRTSDS- 113

Query: 64  YTPPPPPSTPSER-PRFPWDAPCHRPNPPRYCVLLRPPPPSPH 105
            +PPPP +   ER  R P   P   PNP        PPPP  H
Sbjct: 114 -SPPPPSNFFEERFGRVP--VPPSGPNP---TTSDSPPPPPSH 146

BLAST of Clc04G04770 vs. NCBI nr
Match: MBA0801286.1 (hypothetical protein [Gossypium harknessii])

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-04
Identity = 37/70 (52.86%), Postives = 41/70 (58.57%), Query Frame = 0

Query: 3   KFDMYSKGRVPILPPV-NSHSTLPPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTSAG 62
           +F+M  KG VPI P   ++    PP   T L      KFGM PKGVPIPPSGPS RTS  
Sbjct: 61  RFEMLPKG-VPIPPSAPSTFLPFPPMILTSLSLSKSLKFGMLPKGVPIPPSGPSRRTSDS 120

Query: 63  KYTPPPPPST 72
              PPPPP T
Sbjct: 121 --PPPPPPLT 127

BLAST of Clc04G04770 vs. ExPASy TrEMBL
Match: A0A7J9LJX0 (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_028844 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.3e-06
Identity = 38/72 (52.78%), Postives = 42/72 (58.33%), Query Frame = 0

Query: 3  KFDMYSKGRVPILPPV-NSHSTLPPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTSAG 62
          +F M  KG VPI P   +++   PP   T L      KFGM PKGVPIPPSGPS RTSA 
Sbjct: 18 RFGMLPKG-VPIPPSAPSTYLPFPPMILTSLSLSKSLKFGMLPKGVPIPPSGPSRRTSAS 77

Query: 63 KYTPPPPPSTPS 74
             PPPPP   S
Sbjct: 78 PPPPPPPPPLTS 88

BLAST of Clc04G04770 vs. ExPASy TrEMBL
Match: A0A5D3C2C7 (Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G00150 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.8e-05
Identity = 48/103 (46.60%), Postives = 57/103 (55.34%), Query Frame = 0

Query: 4   FDMYSKGRVPIL-PPVNSHSTLPPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTSAGK 63
           F MY KG VP   P   +  + PP PF +L  ++KF FGMYPKG+ +PPSGPS RTS   
Sbjct: 54  FKMYPKGIVPPSGPSQRTSDSSPPPPFNIL--QNKFDFGMYPKGI-VPPSGPSQRTSDS- 113

Query: 64  YTPPPPPSTPSER-PRFPWDAPCHRPNPPRYCVLLRPPPPSPH 105
            +PPPP +   ER  R P   P   PNP        PPPP  H
Sbjct: 114 -SPPPPSNFFEERFGRVP--VPPSGPNP---TTSDSPPPPPSH 146

BLAST of Clc04G04770 vs. ExPASy TrEMBL
Match: A0A1S3B4V4 (proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo OX=3656 GN=LOC103486183 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.8e-05
Identity = 48/103 (46.60%), Postives = 57/103 (55.34%), Query Frame = 0

Query: 4   FDMYSKGRVPIL-PPVNSHSTLPPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTSAGK 63
           F MY KG VP   P   +  + PP PF +L  ++KF FGMYPKG+ +PPSGPS RTS   
Sbjct: 54  FKMYPKGIVPPSGPSQRTSDSSPPPPFNIL--QNKFDFGMYPKGI-VPPSGPSQRTSDS- 113

Query: 64  YTPPPPPSTPSER-PRFPWDAPCHRPNPPRYCVLLRPPPPSPH 105
            +PPPP +   ER  R P   P   PNP        PPPP  H
Sbjct: 114 -SPPPPSNFFEERFGRVP--VPPSGPNP---TTSDSPPPPPSH 146

BLAST of Clc04G04770 vs. ExPASy TrEMBL
Match: A0A0D2NUV0 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G237900 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.1e-05
Identity = 38/70 (54.29%), Postives = 40/70 (57.14%), Query Frame = 0

Query: 3  KFDMYSKGRVPILPPVNSHS-TLPPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTSAG 62
          +F M  KG VPI P  +S S   PP   T L      KFGM PKGVPIPPSGPS  TS  
Sbjct: 26 RFGMLPKG-VPIPPSASSTSLPFPPMILTSLSLSKSLKFGMLPKGVPIPPSGPSRHTSDS 85

Query: 63 KYTPPPPPST 72
             PPPPP T
Sbjct: 86 --PPPPPPLT 92

BLAST of Clc04G04770 vs. ExPASy TrEMBL
Match: A0A7J9GUN1 (Uncharacterized protein OS=Gossypium harknessii OX=34285 GN=Gohar_011660 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.1e-05
Identity = 37/70 (52.86%), Postives = 41/70 (58.57%), Query Frame = 0

Query: 3   KFDMYSKGRVPILPPV-NSHSTLPPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTSAG 62
           +F+M  KG VPI P   ++    PP   T L      KFGM PKGVPIPPSGPS RTS  
Sbjct: 61  RFEMLPKG-VPIPPSAPSTFLPFPPMILTSLSLSKSLKFGMLPKGVPIPPSGPSRRTSDS 120

Query: 63  KYTPPPPPST 72
              PPPPP T
Sbjct: 121 --PPPPPPLT 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6603463.12.3e-1779.03hypothetical protein SDJN03_04072, partial [Cucurbita argyrosperma subsp. sorori... [more]
MBA0858619.16.8e-0652.78hypothetical protein [Gossypium schwendimanii][more]
XP_011654399.26.8e-0645.71proline-rich protein HaeIII subfamily 1-like [Cucumis sativus][more]
XP_008442275.19.9e-0546.60PREDICTED: proline-rich protein HaeIII subfamily 1-like [Cucumis melo] >KAA00418... [more]
MBA0801286.11.7e-0452.86hypothetical protein [Gossypium harknessii][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7J9LJX03.3e-0652.78Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_028844 PE=4... [more]
A0A5D3C2C74.8e-0546.60Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194... [more]
A0A1S3B4V44.8e-0546.60proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo OX=3656 GN=LOC10348... [more]
A0A0D2NUV08.1e-0554.29Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G237900 PE=4 ... [more]
A0A7J9GUN18.1e-0552.86Uncharacterized protein OS=Gossypium harknessii OX=34285 GN=Gohar_011660 PE=4 SV... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc04G04770.2Clc04G04770.2mRNA