Clc04G04770 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCAAAATTTGATATGTATTCTAAAGGCCGCGTACCTATTCTTCCACCGGTCAACTCACATTCAACTCTACCACCTACTCCATTCACTGTTCTAGAAAAGGAATCGAAATTCAAATTTGGAATGTATCCTAAAGGTGTACCTATTCCTCCATCTGGACCGAGTGGAAGAACTTCGGCTGGCAAATATACTCCTCCGCCACCTCCATCTACGCCAAGTGAACGACCACGCTTTCCATGGGATGCACCTTGTCACCGTCCTAATCCGCCACGCTACTGCGTCCTATTACGACCACCGCCGCCATCCCCTCACTCTAGAGCTCCAATCATCGTTGATGTGATTACAAGTGTTGAGGATTAA ATGCCAAAATTTGATATGTATTCTAAAGGCCGCGTACCTATTCTTCCACCGGTCAACTCACATTCAACTCTACCACCTACTCCATTCACTGTTCTAGAAAAGGAATCGAAATTCAAATTTGGAATGTATCCTAAAGGTGTACCTATTCCTCCATCTGGACCGAGTGGAAGAACTTCGGCTGGCAAATATACTCCTCCGCCACCTCCATCTACGCCAAGTGAACGACCACGCTTTCCATGGGATGCACCTTGTCACCGTCCTAATCCGCCACGCTACTGCGTCCTATTACGACCACCGCCGCCATCCCCTCACTCTAGAGCTCCAATCATCGTTGATGTGATTACAAGTGTTGAGGATTAA ATGCCAAAATTTGATATGTATTCTAAAGGCCGCGTACCTATTCTTCCACCGGTCAACTCACATTCAACTCTACCACCTACTCCATTCACTGTTCTAGAAAAGGAATCGAAATTCAAATTTGGAATGTATCCTAAAGGTGTACCTATTCCTCCATCTGGACCGAGTGGAAGAACTTCGGCTGGCAAATATACTCCTCCGCCACCTCCATCTACGCCAAGTGAACGACCACGCTTTCCATGGGATGCACCTTGTCACCGTCCTAATCCGCCACGCTACTGCGTCCTATTACGACCACCGCCGCCATCCCCTCACTCTAGAGCTCCAATCATCGTTGATGTGATTACAAGTGTTGAGGATTAA MPKFDMYSKGRVPILPPVNSHSTLPPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTSAGKYTPPPPPSTPSERPRFPWDAPCHRPNPPRYCVLLRPPPPSPHSRAPIIVDVITSVED Homology
BLAST of Clc04G04770 vs. NCBI nr
Match: KAG6603463.1 (hypothetical protein SDJN03_04072, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 99.4 bits (246), Expect = 2.3e-17 Identity = 49/62 (79.03%), Postives = 51/62 (82.26%), Query Frame = 0
BLAST of Clc04G04770 vs. NCBI nr
Match: MBA0858619.1 (hypothetical protein [Gossypium schwendimanii]) HSP 1 Score: 61.2 bits (147), Expect = 6.8e-06 Identity = 38/72 (52.78%), Postives = 42/72 (58.33%), Query Frame = 0
BLAST of Clc04G04770 vs. NCBI nr
Match: XP_011654399.2 (proline-rich protein HaeIII subfamily 1-like [Cucumis sativus]) HSP 1 Score: 61.2 bits (147), Expect = 6.8e-06 Identity = 48/105 (45.71%), Postives = 57/105 (54.29%), Query Frame = 0
BLAST of Clc04G04770 vs. NCBI nr
Match: XP_008442275.1 (PREDICTED: proline-rich protein HaeIII subfamily 1-like [Cucumis melo] >KAA0041826.1 proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK05348.1 proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa]) HSP 1 Score: 57.4 bits (137), Expect = 9.9e-05 Identity = 48/103 (46.60%), Postives = 57/103 (55.34%), Query Frame = 0
BLAST of Clc04G04770 vs. NCBI nr
Match: MBA0801286.1 (hypothetical protein [Gossypium harknessii]) HSP 1 Score: 56.6 bits (135), Expect = 1.7e-04 Identity = 37/70 (52.86%), Postives = 41/70 (58.57%), Query Frame = 0
BLAST of Clc04G04770 vs. ExPASy TrEMBL
Match: A0A7J9LJX0 (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_028844 PE=4 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 3.3e-06 Identity = 38/72 (52.78%), Postives = 42/72 (58.33%), Query Frame = 0
BLAST of Clc04G04770 vs. ExPASy TrEMBL
Match: A0A5D3C2C7 (Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G00150 PE=4 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 4.8e-05 Identity = 48/103 (46.60%), Postives = 57/103 (55.34%), Query Frame = 0
BLAST of Clc04G04770 vs. ExPASy TrEMBL
Match: A0A1S3B4V4 (proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo OX=3656 GN=LOC103486183 PE=4 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 4.8e-05 Identity = 48/103 (46.60%), Postives = 57/103 (55.34%), Query Frame = 0
BLAST of Clc04G04770 vs. ExPASy TrEMBL
Match: A0A0D2NUV0 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G237900 PE=4 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 8.1e-05 Identity = 38/70 (54.29%), Postives = 40/70 (57.14%), Query Frame = 0
BLAST of Clc04G04770 vs. ExPASy TrEMBL
Match: A0A7J9GUN1 (Uncharacterized protein OS=Gossypium harknessii OX=34285 GN=Gohar_011660 PE=4 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 8.1e-05 Identity = 37/70 (52.86%), Postives = 41/70 (58.57%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
|