Clc11G19220 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G19220
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RNA-directed DNA polymerase
Location	ClcChr11: 29691186 .. 29692112 (+)
RNA-Seq Expression	Clc11G19220
Synteny	Clc11G19220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAATTAAGAGCGTGGTTTATGCAATTCCTACGTTTGTGATGGGTTGTTTCAGGTTGCCTACAGGCTTTTGCAAGGACATTATGCGTTTCTGTGCTGAATTTTGGTAGGGGTTCACCCAAGCTAAAGGTAAGATGCATTGGTTTTCTTGAGATAAGCTCTATCTTCCTAAAGAAGTGGGTAGATTGGCATTTTTAAGGACTTGGAGGTCTAACAAGTTTGGCATCTTTAAACAATCCTGGCTCCTTGCTTGATAAGGTGCTACAAGGGTGAGATTTTCCTTCTAATCTTTTGTAAACCAAGGTTTTTCAAAATTGTTTGTTTTTCTGGAAAGGTTTTGTTTTGAGTATTAATTTGTCGAAATTAGGACTCCGCATGAGCATTGGTAATCGAATACCCACGCATGTGTTCAGCTATCCTTGGATTACAAGGCTTTCTACTTTTCGTCCTATTACTCCGAATTCTAGTGCGGTAGATTTCCATTGTCTGATTTTATAATCACAAAAGACAGAGGGATATGGGTAAGCTTGACTATGAGGTTATTCTTATCTCGAGGTCAGTATTCAGTTAAGAGCGGTTATAAGGTTGCTATGCTACTTTACAAACATTCCTCTACCCCTAGTGAGGATGTGGTGGGAACGTTTATGGAGCTCAAAAATCCCTCCGAAGGTACAACATTTTGTTTGGAAAACTGTTGGAAATTGCTTGCTGTTTTAATATTTAGTAGGCACATTGAGATTCATCTTATTGTCCAGTGTGTGGACGTTCCATGGAAACAACAGTGCATGCTTTGTTTGGTTGCTATTGAGCCCAACAAAACCATTCTTCCTGTTTTGAAACATTTAAATATTGATTCTTTTGATAGTTTCCAATGGGTTGATAGTTTCCAATGGGCTGAGTTGTTTATGTCCTTTTGCCTAATCTGA

mRNA sequence

ATGTTAATTAAGAGCGTGGTTTATGCAATTCCTACGTTTGTGATGGGTTGTTTCAGGTTGCCTACAGGCTTTTGCAAGGACATTATGCGTTTCTGTGCTGAATTTTGGTGCTACAAGGGACTCCGCATGAGCATTGGTAATCGAATACCCACGCATGTGTTCAGCTATCCTTGGATTACAAGGCTTTCTACTTTTCGTCCTATTACTCCGAATTCTAGTGCGTATTCAGTTAAGAGCGGTTATAAGGTTGCTATGCTACTTTACAAACATTCCTCTACCCCTAGTGAGGATGTGGTGGGAACGTTTATGGAGCTCAAAAATCCCTCCGAAGGTACAACATTTTGTTTGGAAAACTGTTGGAAATTGCTTGCTGTTTTAATATTTAGTAGGCACATTGAGATTCATCTTATTGTCCAGTGTGTGGACGTTCCATGGAAACAACAGTGCATGCTTTGTTTGGTTGCTATTGAGCCCAACAAAACCATTCTTCCTGTTTTGAAACATTTAAATATTGATTCTTTTGATAGTTTCCAATGGGTTGATAGTTTCCAATGGGCTGAGTTGTTTATGTCCTTTTGCCTAATCTGA

Coding sequence (CDS)

ATGTTAATTAAGAGCGTGGTTTATGCAATTCCTACGTTTGTGATGGGTTGTTTCAGGTTGCCTACAGGCTTTTGCAAGGACATTATGCGTTTCTGTGCTGAATTTTGGTGCTACAAGGGACTCCGCATGAGCATTGGTAATCGAATACCCACGCATGTGTTCAGCTATCCTTGGATTACAAGGCTTTCTACTTTTCGTCCTATTACTCCGAATTCTAGTGCGTATTCAGTTAAGAGCGGTTATAAGGTTGCTATGCTACTTTACAAACATTCCTCTACCCCTAGTGAGGATGTGGTGGGAACGTTTATGGAGCTCAAAAATCCCTCCGAAGGTACAACATTTTGTTTGGAAAACTGTTGGAAATTGCTTGCTGTTTTAATATTTAGTAGGCACATTGAGATTCATCTTATTGTCCAGTGTGTGGACGTTCCATGGAAACAACAGTGCATGCTTTGTTTGGTTGCTATTGAGCCCAACAAAACCATTCTTCCTGTTTTGAAACATTTAAATATTGATTCTTTTGATAGTTTCCAATGGGTTGATAGTTTCCAATGGGCTGAGTTGTTTATGTCCTTTTGCCTAATCTGA

Protein sequence

MLIKSVVYAIPTFVMGCFRLPTGFCKDIMRFCAEFWCYKGLRMSIGNRIPTHVFSYPWITRLSTFRPITPNSSAYSVKSGYKVAMLLYKHSSTPSEDVVGTFMELKNPSEGTTFCLENCWKLLAVLIFSRHIEIHLIVQCVDVPWKQQCMLCLVAIEPNKTILPVLKHLNIDSFDSFQWVDSFQWAELFMSFCLI

Homology

[Close]

BLAST of Clc11G19220 vs. NCBI nr
Match: XP_027166343.1 (uncharacterized protein LOC113766338 [Coffea eugenioides])

HSP 1 Score: 56.2 bits (134), Expect = 3.6e-04
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 1   MLIKSVVYAIPTFVMGCFRLPTGFCKDIMRFCAEFWCYKGLR 43
           +LIK+V  A+PT+VM CFRLP G C+DI R  A+FW  KG R
Sbjct: 703 VLIKAVTMAMPTYVMACFRLPKGLCRDITRKIAKFWWGKGER 744

[Close]

BLAST of Clc11G19220 vs. ExPASy TrEMBL
Match: A0A2N9J2A6 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58465 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-04
Identity = 30/97 (30.93%), Postives = 44/97 (45.36%), Query Frame = 0


Query: 1   MLIKSVVYAIPTFVMGCFRLPTGFCKDIMRFCAEFW------------------------ 60
           +LIK+V+ AIPT+ M CF+LP GFC +I      FW                        
Sbjct: 247 VLIKAVIQAIPTYAMSCFKLPAGFCDEISSMATGFWWGQKDRARKIHWLSRKKLLKSKKE 306

Query: 61  ---CYKGLRMSIGNRIPTHVFSYPWITRLSTFRPITP 71
                +GLR  +G+    H++   W+   ST+R I+P
Sbjct: 307 GETLKEGLRWRVGSGESIHIWGDKWLPSPSTYRVISP 343

[Close]

BLAST of Clc11G19220 vs. ExPASy TrEMBL
Match: A0A392M8T1 (Putative ribonuclease H protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0004350 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.1e-04
Identity = 38/127 (29.92%), Postives = 59/127 (46.46%), Query Frame = 0


Query: 2   LIKSVVYAIPTFVMGCFRLPTGFCKDIMRFCAEF-W---------CYKGLRMSIGNRIPT 61
           LIK+V  AIP ++M C++LP G C++I  +   + W            G R SIGN    
Sbjct: 41  LIKAVAQAIPNYIMSCYKLPQGCCQNIEGYHPSYAWRSLLQPKDVIALGARWSIGNGHSV 100

Query: 62  HVFSYPWITRLSTFRPITPNSSAYSVKSGYKV----AMLLYKHSSTPSEDVVGTFMELKN 115
           H+F   WI +    +   P +S YSV+S + +    A LL ++SS+    +      +  
Sbjct: 101 HIFKDNWIPKSPWDK--APVASEYSVRSAHHLLREEAKLLPENSSSRERGIWKKIWSIPI 160

[Close]

BLAST of Clc11G19220 vs. ExPASy TrEMBL
Match: A0A5A7Q480 (RNA-directed DNA polymerase OS=Striga asiatica OX=4170 GN=STAS_16637 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.1e-04
Identity = 29/86 (33.72%), Postives = 47/86 (54.65%), Query Frame = 0


Query: 1   MLIKSVVYAIPTFVMGCFRLPTGFCKDIMR----FC---AEFWCYK-----------GLR 60
           +LIK+V+ ++P +VM  FRLP G C++I R    FC   ++ W +K           G+R
Sbjct: 719 ILIKTVLSSLPGYVMSVFRLPVGVCQNICRELTSFCKKPSDSWMWKGWLDARKSLRLGMR 778

Query: 61  MSIGNRIPTHVFSYPWITRLSTFRPI 69
             +GN     ++ YPWI   + F+P+
Sbjct: 779 YRVGNGCAIDLWDYPWIPTNTNFKPV 804

The following BLAST results are available for this feature:

BLAST of Clc11G19220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_027166343.1	3.6e-04	59.52	uncharacterized protein LOC113766338 [Coffea eugenioides]	[more]

BLAST of Clc11G19220 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc11G19220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9J2A6	1.3e-04	30.93	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A392M8T1	5.1e-04	29.92	Putative ribonuclease H protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01...	[more]
A0A5A7Q480	5.1e-04	33.72	RNA-directed DNA polymerase OS=Striga asiatica OX=4170 GN=STAS_16637 PE=4 SV=1	[more]

BLAST of Clc11G19220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..17 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G19220.1	Clc11G19220.1	mRNA