Clc11G08190 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G08190
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr11: 7992448 .. 7993813 (-)
RNA-Seq Expression	Clc11G08190
Synteny	Clc11G08190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCATAAAGCAGATCCACTTCCATCAACCCATCACATACCTTTCCCTTGCTTATAAACCATTTTCTTCTTTGTCCCCAAGTTTGGCATCCCTTCAAACTCCTTCTTCATTAAGCAAATCAACACACTCATTCACTCCTTATAATCCCTCCTTTACTTTCAGGTACTTCCAACCTTGAATTCTCTCTTTCACTGATCCTATTCAGAGGGATTCCACTTGTTCAAATTCAAAACACATCTCCTCTTGTGGATAGAGATGAGTGCAGACTGGGGACCGGTTGTAGTGGCGGTGGCGCTGTTCATTCTCCTGTCGCCGGGGCTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGGAATATGAACACCAGTGGGATTGCCATTTTGGTACACGCCATCATATTCTTCTGCATACTCACCATATTGATCATTGCAATTGGTATTCACATACACGTTTAGCAATTTGATCATCTGCTTTGGCTACCTTCTGCAAATGAATTGCTTCCTTTTTTTACTTTTTCCCTTTTCACTAGGATTTTAGCATACTTCTCTGCTTATTCTGCTCCATATTTCTTGTTTTCTTCTTCCCTTTGAACAATAACTTACTATATTGTAATCTGTCTAAATGTAACCTATAATTTCCATTCTTTTTGGGGGTTAATAAGAAAGGTAAAGTTCTATAAACACTCTCACCGTACTTCTACTTCCTTGAATATCTTGAGCAAAACTCTCCTCTATTTTCTTACTAATCGATAATATCCTTCTAGTACCTTGCTTTCACATCACTATGAAACAAACCAAATTTATTCCAATTTTTGCCCAGATTATCCGCACTAAGACGAATATCTTGTACTTGAGATACGTGAAATTTATGAAATCGAAGAATAGAGGGAAAGAAAAAGAAACTTCTCGATGAGAAAGAGTAGCTACAGAGCTCAATATTCGATGTAATTAGATCTATACTAGCAATGGAGGGAGAGGCGAATGTAAAAACGAAATTAACATACAAAATGCCTTTTATCTCTTCCGAGTGTCCGACTACACAAATAACAAATACAGACAGATCAAACAAGATCCGGTTGAAAATGAAATACAACACACAAGGCGGCACAAACATGAGCAGCTTCAGTTGGTAAGAATCTCGAATGAAAAGGGAAGAGAGACGAGAAGAAGAGGTTACCGGATCAGCCAGTGTAGATATGGATATGGAGAGCGAGAATGAAGACAGCATAGAGAATGAAGAAGATGAGCGTGTGTATAGCGACAGCCTTGCCGTTGGTTTTCATGCTCCCGAACTCAAACTGCCGATTATTCCCCGGAAACTGGAAGAGAAGCCCTGGAGAGAGCAGTACGAATAG

mRNA sequence

ATGTTCATAAAGCAGATCCACTTCCATCAACCCATCACATACCTTTCCCTTGCTTATAAACCATTTTCTTCTTTGTCCCCAAGTTTGGCATCCCTTCAAACTCCTTCTTCATTAAGCAAATCAACACACTCATTCACTCCTTATAATCCCTCCTTTACTTTCAGAGATGAGTGCAGACTGGGGACCGGTTGTAGTGGCGGTGGCGCTGTTCATTCTCCTGTCGCCGGGGCTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGGAATATGAACACCAGTGGGATTGCCATTTTGGTACACGCCATCATATTCTTCTGCATACTCACCATATTGATCATTGCAATTGGGAAGAGAGACGAGAAGAAGAGGTTACCGGATCAGCCAGTGTAGATATGGATATGGAGAGCGAGAATGAAGACAGCATAGAGAATGAAGAAGATGAGCGTGTGTATAGCGACAGCCTTGCCGTTGGTTTTCATGCTCCCGAACTCAAACTGCCGATTATTCCCCGGAAACTGGAAGAGAAGCCCTGGAGAGAGCAGTACGAATAG

Coding sequence (CDS)

ATGTTCATAAAGCAGATCCACTTCCATCAACCCATCACATACCTTTCCCTTGCTTATAAACCATTTTCTTCTTTGTCCCCAAGTTTGGCATCCCTTCAAACTCCTTCTTCATTAAGCAAATCAACACACTCATTCACTCCTTATAATCCCTCCTTTACTTTCAGAGATGAGTGCAGACTGGGGACCGGTTGTAGTGGCGGTGGCGCTGTTCATTCTCCTGTCGCCGGGGCTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGGAATATGAACACCAGTGGGATTGCCATTTTGGTACACGCCATCATATTCTTCTGCATACTCACCATATTGATCATTGCAATTGGGAAGAGAGACGAGAAGAAGAGGTTACCGGATCAGCCAGTGTAGATATGGATATGGAGAGCGAGAATGAAGACAGCATAGAGAATGAAGAAGATGAGCGTGTGTATAGCGACAGCCTTGCCGTTGGTTTTCATGCTCCCGAACTCAAACTGCCGATTATTCCCCGGAAACTGGAAGAGAAGCCCTGGAGAGAGCAGTACGAATAG

Protein sequence

MFIKQIHFHQPITYLSLAYKPFSSLSPSLASLQTPSSLSKSTHSFTPYNPSFTFRDECRLGTGCSGGGAVHSPVAGAAFSVAGENQGGGVWEYEHQWDCHFGTRHHILLHTHHIDHCNWEERREEEVTGSASVDMDMESENEDSIENEEDERVYSDSLAVGFHAPELKLPIIPRKLEEKPWREQYE

Homology

[Close]

BLAST of Clc11G08190 vs. NCBI nr
Match: KAA0056546.1 (hypothetical protein E6C27_scaffold288G00480 [Cucumis melo var. makuwa] >TYK02716.1 hypothetical protein E5676_scaffold1154G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-17
Identity = 52/67 (77.61%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 120 EERREEEVTGSASVDMDMESENEDSIENEEDERVYSDSLAVGFHAPELKLPIIPRKLEEK 179
           EER+EEEVTGSASVD+DMESENE+SIE+EEDE VYS+S +VG HAPELKL IIP KL++K
Sbjct: 49  EERQEEEVTGSASVDVDMESENENSIEDEEDESVYSNSFSVGLHAPELKLTIIPGKLKQK 108

Query: 180 PWREQYE 187
           P R+QYE
Sbjct: 109 PGRKQYE 115

[Close]

BLAST of Clc11G08190 vs. NCBI nr
Match: KAG6602686.1 (Actin-related protein 2/3 complex subunit 2A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.0 bits (227), Expect = 5.6e-15
Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 120 EERREEEVTGSASVDMDMESENEDSIENEEDERVYSDSLAVGFHAPELKLPIIPRKLEEK 179
           EE REEEVTGS+ VD+DM+SENED IE+EEDE +   S  V  H PELKLPIIPR+LE+K
Sbjct: 105 EEGREEEVTGSSRVDVDMKSENEDGIEDEEDESMNDYSFTVSLHTPELKLPIIPRELEQK 164

Query: 180 PWREQYE 187
           PWR+Q+E
Sbjct: 165 PWRKQHE 171

[Close]

BLAST of Clc11G08190 vs. NCBI nr
Match: KAG6578364.1 (hypothetical protein SDJN03_22812, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.8 bits (203), Expect = 3.4e-12
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 127 VTGSASVDMDMESENEDSIENEEDERVYSDSLAVGFHAPELKLPIIPRKLEEKPWREQYE 186
           V   AS+D+D ESENED ++++E+ERV  D L+VG H P+LKL IIPRKLE+KPWREQYE
Sbjct: 60  VIAIASIDVDTESENEDGVKDKENERVNGDGLSVGLHTPKLKLSIIPRKLEQKPWREQYE 119

[Close]

BLAST of Clc11G08190 vs. NCBI nr
Match: KAE8652261.1 (hypothetical protein Csa_022581 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 4.9e-11
Identity = 40/56 (71.43%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 131 ASVDMDMESENEDSIENEEDERVYSDSLAVGFHAPELKLPIIPRKLEEKPWREQYE 187
           ASVD+DMESENEDSIE+EEDE VYS+S ++G HAP+LKL II RKL++K  R+QYE
Sbjct: 64  ASVDVDMESENEDSIEDEEDESVYSNSFSIGLHAPKLKLAIITRKLKQKARRKQYE 119

[Close]

BLAST of Clc11G08190 vs. NCBI nr
Match: GER47504.1 (hypothetical protein STAS_24622 [Striga asiatica])

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-08
Identity = 34/59 (57.63%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 128 TGSASVDMDMESENEDSIENEEDERVYSDSLAVGFHAPELKLPIIPRKLEEKPWREQYE 187
           TGSA VD+D++ E+E+S+E EEDERV  +SLAVG HA EL+L ++PR L+++P  +QYE
Sbjct: 75  TGSAGVDVDVDGEDENSVEGEEDERVDGNSLAVGLHASELQLAVVPRYLKQQPRLQQYE 133

[Close]

BLAST of Clc11G08190 vs. ExPASy TrEMBL
Match: A0A5D3BWV4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1154G00140 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 7.7e-18
Identity = 52/67 (77.61%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 120 EERREEEVTGSASVDMDMESENEDSIENEEDERVYSDSLAVGFHAPELKLPIIPRKLEEK 179
           EER+EEEVTGSASVD+DMESENE+SIE+EEDE VYS+S +VG HAPELKL IIP KL++K
Sbjct: 49  EERQEEEVTGSASVDVDMESENENSIEDEEDESVYSNSFSVGLHAPELKLTIIPGKLKQK 108

Query: 180 PWREQYE 187
           P R+QYE
Sbjct: 109 PGRKQYE 115

[Close]

BLAST of Clc11G08190 vs. ExPASy TrEMBL
Match: A0A5A7QQI9 (Uncharacterized protein OS=Striga asiatica OX=4170 GN=STAS_24622 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-08
Identity = 34/59 (57.63%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 128 TGSASVDMDMESENEDSIENEEDERVYSDSLAVGFHAPELKLPIIPRKLEEKPWREQYE 187
           TGSA VD+D++ E+E+S+E EEDERV  +SLAVG HA EL+L ++PR L+++P  +QYE
Sbjct: 75  TGSAGVDVDVDGEDENSVEGEEDERVDGNSLAVGLHASELQLAVVPRYLKQQPRLQQYE 133

[Close]

BLAST of Clc11G08190 vs. ExPASy TrEMBL
Match: A0A0A0LT04 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406100 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-08
Identity = 35/50 (70.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 137 MESENEDSIENEEDERVYSDSLAVGFHAPELKLPIIPRKLEEKPWREQYE 187
           MESENEDSIE+EEDE VYS+S ++G HAP+LKL II RKL++K  R+QYE
Sbjct: 1   MESENEDSIEDEEDESVYSNSFSIGLHAPKLKLAIITRKLKQKARRKQYE 50

[Close]

BLAST of Clc11G08190 vs. ExPASy TrEMBL
Match: A0A445GEX9 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_042794 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-07
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 128 TGSASVDMDMESENEDSIENEEDERVYSDSLAVGFHAPELKLPIIPRKLEEKPWREQYE 187
           TGSA VDMD   E+ED +E EEDERV  +  AVG HA ELKL  +PRK E++P  EQ+E
Sbjct: 63  TGSAGVDMDFNGEDEDGVEREEDERVDENGFAVGLHATELKLLPVPRKGEKQPRLEQHE 121

[Close]

BLAST of Clc11G08190 vs. ExPASy TrEMBL
Match: A0A0B2R840 (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_040169 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-07
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 128 TGSASVDMDMESENEDSIENEEDERVYSDSLAVGFHAPELKLPIIPRKLEEKPWREQYE 187
           TGSA VDMD   E+ED +E EEDERV  +  AVG HA ELKL  +PRK E++P  EQ+E
Sbjct: 8   TGSAGVDMDFNGEDEDGVEREEDERVDENGFAVGLHATELKLLPVPRKGEKQPRLEQHE 66

The following BLAST results are available for this feature:

BLAST of Clc11G08190 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056546.1	1.6e-17	77.61	hypothetical protein E6C27_scaffold288G00480 [Cucumis melo var. makuwa] >TYK0271...	[more]
KAG6602686.1	5.6e-15	68.66	Actin-related protein 2/3 complex subunit 2A, partial [Cucurbita argyrosperma su...	[more]
KAG6578364.1	3.4e-12	65.00	hypothetical protein SDJN03_22812, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8652261.1	4.9e-11	71.43	hypothetical protein Csa_022581 [Cucumis sativus]	[more]
GER47504.1	2.3e-08	57.63	hypothetical protein STAS_24622 [Striga asiatica]	[more]

BLAST of Clc11G08190 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc11G08190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BWV4	7.7e-18	77.61	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7QQI9	1.1e-08	57.63	Uncharacterized protein OS=Striga asiatica OX=4170 GN=STAS_24622 PE=4 SV=1	[more]
A0A0A0LT04	1.5e-08	70.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406100 PE=4 SV=1	[more]
A0A445GEX9	1.6e-07	59.32	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_042794 PE=4 SV=1	[more]
A0A0B2R840	1.6e-07	59.32	Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_040169 PE=4 SV=1	[more]

BLAST of Clc11G08190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G08190.1	Clc11G08190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane