Clc09G19840 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTTTAGTTTTGCTTGGTGTTTGCAAGAAAGCATTGTGTGAGAATCCTCCAAAAGGCCTCAAACTAATTAAGATATGGATAACCCAAGAATTTTATCAGTTCTTCTCCTTTCATGCTTTCTCCTTCTCTTTCTCTCTCCTGGTATACTCTTCTCTCTCCTTTTTTTTTTAATCTTCATGGATTTTTATTACATTCATACCCTCATCTCTTCTCTGTTCAAACTTTTTTTTTTTTTTTTCCAAAAGGATTTGGAGTAGAAATGATGGGAAATATGGAACATGCACCCCCTCTTACTCCACAGAAGGTAAATAATTAGAACTACTTTCCTTTTTCTCTATTATGCATGCTCTCCAAATTGTTTAGAAATCAAATATTACTTTTTTAAAAATGTGTTCATTTTAATCAGTGTGTATTTTCAAAAAAAGAAAAAATTAAAATAAACCAAAATTAAAAATATAAAGACGAAATAATTAAATGAATTGTGTTTATGCGTTTGAATACGACAGGAAATGAGTGGAGGAAGATGGAGGAAGATGATGGTTCAATTAGAGGAAGACTATCATGATCCAGGACCTAATAAACCAAAGACAATGACTACATATAATATGGCTCCTTCTCCTGCAACACCTTAATCCGTACATCTTATATATATATATATATATATGTGTGATCATCATCTTTTTAAGTGTATTTTAATCCATAAGCATAGACTTAAAAACTACTAGTGTGTTATGCTTTCTCTTTTCTCTTTCTATCTTCAAGTGTGTAATAATAATCCATGCATGCATGGACCTCAAAAGTAGTAACTTTTAATTGTCTTTTCTCTCAAATTATAAGTGTAATCCATGTATATTATGGACCTTAAAAGTGTTAACTCTTTCAGCATTTTTTCTCTAAGTCTACTCAGGTATCCTAATCCACATGACATGGACTTGAAATTACTTATGCACCATCATTTTAAGGGAAAATTCCGTTTTTTT GTTTAGTTTTGCTTGGTGTTTGCAAGAAAGCATTGTGTGAGAATCCTCCAAAAGGCCTCAAACTAATTAAGATATGGATAACCCAAGAATTTTATCAGTTCTTCTCCTTTCATGCTTTCTCCTTCTCTTTCTCTCTCCTGGATTTGGAGTAGAAATGATGGGAAATATGGAACATGCACCCCCTCTTACTCCACAGAAGGAAATGAGTGGAGGAAGATGGAGGAAGATGATGGTTCAATTAGAGGAAGACTATCATGATCCAGGACCTAATAAACCAAAGACAATGACTACATATAATATGGCTCCTTCTCCTGCAACACCTTAATCCGTACATCTTATATATATATATATATATATGTGTGATCATCATCTTTTTAAGTGTATTTTAATCCATAAGCATAGACTTAAAAACTACTAGTGTGTTATGCTTTCTCTTTTCTCTTTCTATCTTCAAGTGTGTAATAATAATCCATGCATGCATGGACCTCAAAAGTAGTAACTTTTAATTGTCTTTTCTCTCAAATTATAAGTGTAATCCATGTATATTATGGACCTTAAAAGTGTTAACTCTTTCAGCATTTTTTCTCTAAGTCTACTCAGGTATCCTAATCCACATGACATGGACTTGAAATTACTTATGCACCATCATTTTAAGGGAAAATTCCGTTTTTTT ATGGATAACCCAAGAATTTTATCAGTTCTTCTCCTTTCATGCTTTCTCCTTCTCTTTCTCTCTCCTGGATTTGGAGTAGAAATGATGGGAAATATGGAACATGCACCCCCTCTTACTCCACAGAAGGAAATGAGTGGAGGAAGATGGAGGAAGATGATGGTTCAATTAGAGGAAGACTATCATGATCCAGGACCTAATAAACCAAAGACAATGACTACATATAATATGGCTCCTTCTCCTGCAACACCTTAA MDNPRILSVLLLSCFLLLFLSPGFGVEMMGNMEHAPPLTPQKEMSGGRWRKMMVQLEEDYHDPGPNKPKTMTTYNMAPSPATP Homology
BLAST of Clc09G19840 vs. NCBI nr
Match: XP_031741770.1 (probable calcium-binding protein CML47 [Cucumis sativus]) HSP 1 Score: 101.3 bits (251), Expect = 4.2e-18 Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 0
BLAST of Clc09G19840 vs. NCBI nr
Match: KGN52469.1 (hypothetical protein Csa_008670 [Cucumis sativus]) HSP 1 Score: 101.3 bits (251), Expect = 4.2e-18 Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 0
BLAST of Clc09G19840 vs. NCBI nr
Match: KAA0039469.1 (hypothetical protein E6C27_scaffold64G002790 [Cucumis melo var. makuwa] >TYK00659.1 hypothetical protein E5676_scaffold169G002810 [Cucumis melo var. makuwa]) HSP 1 Score: 72.8 bits (177), Expect = 1.6e-09 Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 0
BLAST of Clc09G19840 vs. NCBI nr
Match: XP_022133549.1 (apidaecins type 14-like isoform X1 [Momordica charantia]) HSP 1 Score: 60.8 bits (146), Expect = 6.2e-06 Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 0
BLAST of Clc09G19840 vs. NCBI nr
Match: XP_022133550.1 (apidaecins type 73-like isoform X2 [Momordica charantia]) HSP 1 Score: 58.2 bits (139), Expect = 4.0e-05 Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 0
BLAST of Clc09G19840 vs. ExPASy TrEMBL
Match: A0A0A0KU89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636610 PE=4 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 2.0e-18 Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 0
BLAST of Clc09G19840 vs. ExPASy TrEMBL
Match: A0A5A7TDZ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002810 PE=4 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 7.7e-10 Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 0
BLAST of Clc09G19840 vs. ExPASy TrEMBL
Match: A0A6J1BWA5 (apidaecins type 14-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006109 PE=4 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 3.0e-06 Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 0
BLAST of Clc09G19840 vs. ExPASy TrEMBL
Match: A0A6J1BVK3 (apidaecins type 73-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111006109 PE=4 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 2.0e-05 Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 0
BLAST of Clc09G19840 vs. ExPASy TrEMBL
Match: A0A0A0KSB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 2.8e-04 Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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